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Plot warp picked coords using IMOD
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| import numpy as np | |
| import starfile | |
| XDIM = 378 | |
| YDIM = 378 | |
| ZDIM = 228 | |
| df = starfile.read("gs07_ts_003_8.00Apx_emd_13474_clean.star") | |
| xyz_headings = [f'rlnCoordinate{axis}' for axis in 'XYZ'] | |
| xyz_headings.append('rlnAutopickFigureOfMerit') | |
| coords = df[xyz_headings].to_numpy() | |
| coords[:,0] *= XDIM | |
| coords[:,1] *= YDIM | |
| coords[:,2] *= ZDIM | |
| np.savetxt("in.txt", coords, fmt='%.3f', delimiter='\t') |
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