Last active
November 4, 2024 22:00
-
-
Save shahpnmlab/d883ab7985b546613b1ff84dd62cbc82 to your computer and use it in GitHub Desktop.
copy_subset_frames_from_mdoc
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
from pathlib import Path | |
import mdocfile | |
import shutil | |
import typer | |
import logging | |
from typing import Optional | |
# Configure logging | |
logging.basicConfig( | |
level=logging.INFO, | |
format='%(asctime)s - %(levelname)s - %(message)s' | |
) | |
logger = logging.getLogger(__name__) | |
app = typer.Typer(no_args_is_help=True) | |
@app.command() | |
def main( | |
md_path: Optional[Path] = typer.Option(None, "--i", help="Path to directory containing mdoc files"), | |
md_name: Optional[str] = typer.Option(None, "--n", help="Name of mdoc file"), | |
src_dir: Optional[Path] = typer.Option(None, "--s", help="Path to where the frames are stored"), | |
dest_dir: Optional[Path] = typer.Option(None, "--d", help="Path where the frames should be copied to"), | |
save_frames_text_file: bool = typer.Option(False, "--save2txt", help="Just save file names to a text file") | |
) -> None: | |
""" | |
Process mdoc files and copy or list associated frames. | |
""" | |
try: | |
# Validate input parameters | |
if not md_path or not md_path.exists(): | |
raise ValueError(f"Invalid or non-existent mdoc directory: {md_path}") | |
if not src_dir or not src_dir.exists(): | |
raise ValueError(f"Invalid or non-existent source directory: {src_dir}") | |
if not save_frames_text_file and (not dest_dir or not dest_dir.exists()): | |
raise ValueError(f"Invalid or non-existent destination directory: {dest_dir}") | |
# Get list of mdoc files | |
mdocs = sorted(list(md_path.glob('*.mdoc'))) | |
if not mdocs: | |
raise FileNotFoundError(f"No mdoc files found in {md_path}") | |
# Filter by name if specified | |
if md_name: | |
mdocs = [mdoc for mdoc in mdocs if mdoc.name == md_name] | |
if not mdocs: | |
raise FileNotFoundError(f"No mdoc file found with name: {md_name}") | |
# Process each mdoc file | |
for mdoc_file in mdocs: | |
logger.info(f"Processing mdoc file: {mdoc_file}") | |
md = mdocfile.read(mdoc_file) | |
if 'SubFramePath' not in md: | |
logger.warning(f"No SubFramePath found in {mdoc_file}") | |
continue | |
if save_frames_text_file: | |
# Save frame names to text file | |
output_file = dest_dir / f"{mdoc_file.stem}_frames.txt" | |
with open(output_file, 'w') as f: | |
for frame in md['SubFramePath']: | |
f.write(f"{frame.name}\n") | |
logger.info(f"Frame names saved to: {output_file}") | |
else: | |
# Copy frames to destination directory | |
for frame in md['SubFramePath']: | |
src_path = src_dir / frame.name | |
dest_path = dest_dir / frame.name | |
if not src_path.exists(): | |
logger.warning(f"Source frame not found: {src_path}") | |
continue | |
try: | |
shutil.copy2(src_path, dest_path) | |
logger.info(f"Copied {frame.name} to {dest_path}") | |
except Exception as e: | |
logger.error(f"Error copying {frame.name}: {str(e)}") | |
except Exception as e: | |
logger.error(f"An error occurred: {str(e)}") | |
raise typer.Exit(code=1) | |
if __name__ == "__main__": | |
app() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
WIP