sharno’s gists

sharno / anonymous_recursive1.exs

Last active February 2, 2018 16:35

As Elixir doesn't have a way to create an anonymous recursive function yet, we have to do a little trick and pass the function to itself when calling it to get recursion

	print = fn f ->
	receive do
	name -> IO.puts(name)
	f.(f)
	end
	end

	server = spawn(fn -> print.(print) end)

	send(server, "Sharno")

sharno / learnHaskell.hs

Created October 3, 2017 04:45

Lecture notes for Bartosz Milewski's videos on Haskell

	:l <filename> -- load
	:r -- reload
	:q -- quit
	:t <expression> -- type
	:i -- info
	:k <something> -- kind
	:sprint <expression> -- prints an expression without evaluation
	------------------------------------

	-- this is a comment

sharno / viz.html

Created January 4, 2017 22:11

	<!DOCTYPE html>
	<meta charset="utf-8">
	<style>
	text{
	font-size:12px;
	}
	.mainBars rect{
	shape-rendering: auto;
	fill-opacity: 0;
	stroke-width: 0.5px;

sharno / recon 2.2 metabolites with only producers or with only consumers

Created November 22, 2016 12:24

recon 2.2 metabolites with only producers or with only consumers

	10fthf7glu_e
	12RHPET_c
	12harachd_r
	12ppd_R_c
	15HPET_r
	17ahprgnlone_m
	17ahprgstrn_m
	18harachd_r
	1a2425thvitd2_m
	1a2425thvitd3_m

sharno / recon subsystems

Created November 1, 2016 14:15

	{'',
	'Alanine and aspartate metabolism',
	'Alkaloid synthesis',
	'Aminosugar metabolism',
	'Androgen and estrogen synthesis and metabolism',
	'Arachidonic acid metabolism',
	'Arginine and Proline Metabolism',
	'Bile acid synthesis',
	'Biotin metabolism',
	'Blood group synthesis',

sharno / dataset_recon_shared_ids

Created October 31, 2016 13:52

	[(u'HMDB00211',
	[u'cis-1,2,3,5-trans-4,6-cyclohexanehexol',
	u'i-inositol',
	u'iso-inositol',
	u'meat sugar',
	u'meso-inositol',
	u'mi',
	u'myo-inositol',
	u'myoinosite',
	u'myoinositol',

sharno / Recon 2.2 reactions without subsystems

Last active October 31, 2016 12:15

	[('R_group_phosphotase_3', 'R group phosphotase 3'),
	('r0068',
	'Acetyl adenylate:CoA ligase (AMP-forming) Pyruvate metabolism EC:6.2.1.1'),
	('r0082',
	'Oxalosuccinate:NADP+ oxidoreductase (decarboxylating) Citrate cycle (TCA cycle) EC:1.1.1.42'),
	('r0083',
	'Oxalosuccinate:NADP+ oxidoreductase (decarboxylating) Citrate cycle (TCA cycle) EC:1.1.1.42'),
	('r0084',
	'Oxalosuccinate:NADP+ oxidoreductase (decarboxylating) Citrate cycle (TCA cycle) EC:1.1.1.42'),
	('r0097', 'Acetate:CoA ligase (AMP-forming) Pyruvate metabolism EC:6.2.1.1'),

sharno / factchecking_list.py

Last active June 19, 2016 18:49

	from selenium import webdriver
	import time, json

	browser = webdriver.Firefox()
	browser.implicitly_wait(10)

	browser.get('http://reporterslab.org/fact-checking/')
	data = {}

	data = {}

sharno / amr.py

Created April 13, 2016 15:52

	import json
	import csv

	with open("amr.json", "r") as f:
	data = json.load(f)

	data = sorted([(x['_id'], x['sent']) for x in data])
	data2 = [(data[0][0], data[0][1], data[0][1])]
	for i in range(1, len(data)):
	data2.append((data[i][0], data[i][1], data[i][1] + data2[i-1][2]))

sharno / clean_data.py

Created January 22, 2016 22:16

	import sys
	import pandas as pd


	file_names = [sys.argv[1], sys.argv[2]]

	frames = []
	output_filename = ""

	for file_name in file_names:

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