nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
# 

ianmackinnon

# gcc -Wall -o match match.c && ./match
#


#include <stdio.h>
#include <string.h>
#include <regex.h>

MohamedAlaa

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

jboner

Latency Comparison Numbers (~2012)
----------------------------------
L1 cache reference                           0.5 ns
Branch mispredict                            5   ns
L2 cache reference                           7   ns                      14x L1 cache
Mutex lock/unlock                           25   ns
Main memory reference                      100   ns                      20x L2 cache, 200x L1 cache
Compress 1K bytes with Zippy             3,000   ns        3 us
Send 1K bytes over 1 Gbps network       10,000   ns       10 us
Read 4K randomly from SSD*             150,000   ns      150 us          ~1GB/sec SSD

ramnathv

Creating a clean gh-pages branch

This is the sequence of steps to follow to create a root gh-pages branch. It is based on a question at [SO]

cd /path/to/repo-name
git symbolic-ref HEAD refs/heads/gh-pages
rm .git/index
git clean -fdx
echo "My GitHub Page" > index.html

netj

#!/usr/bin/env bash
# memusg -- Measure memory usage of processes
# Usage: memusg COMMAND [ARGS]...
#
# Author: Jaeho Shin <[email protected]>
# Created: 2010-08-16
############################################################################
# Copyright 2010 Jaeho Shin.                                               #
#                                                                          #
# Licensed under the Apache License, Version 2.0 (the "License");          #