pandoc -f markdown -t html -c pandoc.css -s -o report.html
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#!/bin/sh | |
# Test data | |
# | |
# Retrieve 1M reads from any Illumina reads | |
# | |
# seqkit head -n 1000000 xxxx_1.fq.gz -o test.fq.gz | |
# | |
# Or | |
# |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#!/bin/sh | |
while read file; do | |
if [[ $string =~ .*=.* ]]; then | |
continue | |
fi | |
t=$(exiftool "$file" \ | |
| grep "^Create Date" | head -n 1 \ | |
| sed -r "s/\s+/ /g" | cut -d " " -f 4 \ |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
package main | |
import ( | |
"compress/gzip" | |
"fmt" | |
"os" | |
"strconv" | |
boom "github.com/tylertreat/BoomFilters" | |
) |
8 . . TEXT ·__mm_add_epi32(SB),0,$0
9 640ms 640ms VMOVDQU x+0(FP), Y0
10 5.62s 5.62s VMOVDQU y+32(FP), Y1
11 4.81s 4.81s VPADDD Y1, Y0, Y0
12 1.16s 1.16s VMOVDQU Y0, q+64(FP)
13 1.30s 1.30s VZEROUPPER
14 . . RET
Functions:
# encoding: ACTG
def nuc2int_nochecking(b):
return (ord(b) >> 1) & 3, True
def nuc2int_if(b):
if b == 'a' or b == 'c' or b == 'g' or b == 't' \
or b == 'A' or b == 'C' or b == 'G' or b == 'T':
OlderNewer