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March 27, 2016 02:19
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Cute fish out of MNIST Handwritten Dataset [OC]
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import numpy as np | |
import pandas as pd | |
import matplotlib.pyplot as plt | |
from sklearn.decomposition import PCA | |
''' | |
https://www.reddit.com/r/dataisbeautiful/comments/4c3zjt/cute_fish_out_of_mnist_handwritten_dataset_oc/ | |
PCA Dimentionality Reduction of Handwritten Dataset from 784 to 2, normalizing and vizualizing. | |
''' | |
def main(): | |
normalization_constant = 255 | |
# Loading Train Dataset | |
dataFrame_train = pd.read_csv('a3_datasets/datasets/digits/train.csv') | |
train = np.array(dataFrame_train.iloc[0:, 1:] / normalization_constant) | |
train_label = np.array(dataFrame_train['label']) | |
# data = {1: [], 2: [], 3: [], 4: [], 5: [], 6: [], 7: [], 8: [], 9: [], 0: []} | |
# for pixels, label in zip(train, train_label): | |
# if len(data[label]) < num_of_samples: | |
# data[label].append(pixels) | |
# Count the number of digits for each label | |
# count = {1: 0, 2: 0, 3: 0, 4: 0, 5: 0, 6: 0, 7: 0, 8: 0, 9: 0, 0: 0} | |
# for i in train_label: | |
# count[i] += 1 | |
# print count | |
pca = PCA(2, whiten=True) | |
train = pca.fit_transform(train) | |
label_color = {1:'r', 2: 'b', 3: 'g', 4: 'c', 5: 'm', 6: 'y', 7: '0.75', 8: 'w', 9: '#87fc70', 0: '#ffc0cb'} | |
plt.scatter(train[:, 0], train[:, 1]) | |
for label, x, y in zip(train_label, train[:, 0], train[:, 1]): | |
plt.annotate(label, | |
xy = (x, y), xytext = (0,0), | |
textcoords = 'offset points', ha = 'right', va = 'bottom', | |
bbox = dict(boxstyle = 'round, pad=0.5', fc = label_color[label], alpha = 0.5), | |
arrowprops = dict(arrowstyle = '->', connectionstyle = 'arc3,rad=0')) | |
# Graph | |
plt.title('MNIST Dataset reduced to 2 Components using PCA') | |
plt.xlabel('Component 1') | |
plt.ylabel('Component 2') | |
plt.show() | |
if __name__ == '__main__': | |
main() | |
''' OUTPUT | |
filename: 2000.png | |
Digits 0, and 1 are easily distinguishable but on the other hand | |
the only thing stopping me from stating 2 and 3 also as distinguishable | |
is the stark contrast in color I've set. | |
''' |
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