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Example of using Biostrings views
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| library(Biostrings) | |
| library(BSgenome.Hsapiens.UCSC.hg19) | |
| #نأخذ الكروموزوم 1 كمثال | |
| Hsapiens$chr1 | |
| # 249250621-letter "DNAString" instance | |
| #seq: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | |
| # لنفرض أننا مهتمين بسلسلة الجينات ABCA4, ACADM و GBA | |
| genes <- Views(Hsapiens$chr1, | |
| start = c(93992836, 75724346, 155234447 ), | |
| end=c(94121148, 75763678, 155244861)) | |
| genes | |
| # Views on a 249250621-letter DNAString subject | |
| #subject: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | |
| #views: | |
| # start end width | |
| #[1] 93992836 94121148 128313 [AAATTGCTAACTGCTAGGGAAC...AATTAGCAAATACCTTTGCCTC] | |
| #[2] 75724346 75763678 39333 [AGCGTTTGAGCTCCAATAAGGG...AACAACAACAAAAATGTCTCTT] | |
| #[3] 155234447 155244861 10415 [TCTGGTGCTCGGTAATGGCGAG...GTGGCTCATGCCTGTAATCCCA] |
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