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April 24, 2019 16:47
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gmap-gsnap (brewsci/bio/gmap-gsnap) on "CentOS Linux release 7.4.1708 (Core) " - Homebrew build logs
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| Homebrew build logs for brewsci/bio/gmap-gsnap on "CentOS Linux release 7.4.1708 (Core) " | |
| Build date: 2019-04-24 09:37:43 |
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| HOMEBREW_VERSION: 2.1.0-30-g1c65591 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 1c655916fe9a9fd46b73fc23f5f54d15d934b8f9 | |
| Last commit: 2 weeks ago | |
| Core tap ORIGIN: https://github.com/Homebrew/linuxbrew-core | |
| Core tap HEAD: effaf8b98a5c7388cd6e3fdc3d51b896fc9a6843 | |
| Core tap last commit: 12 days ago | |
| HOMEBREW_PREFIX: /projects/btl_scratch/sjackman/brew | |
| HOMEBREW_REPOSITORY: /projects/btl_scratch/sjackman/brew/Homebrew | |
| HOMEBREW_CELLAR: /projects/btl_scratch/sjackman/brew/Cellar | |
| HOMEBREW_CACHE: /gsc/btl/linuxbrew/var/cache/homebrew | |
| HOMEBREW_TEMP: /var/tmp/sjackman | |
| HOMEBREW_BINTRAY_KEY: set | |
| HOMEBREW_BINTRAY_USER: sjackman | |
| HOMEBREW_CIRCLE_TOKEN: set | |
| HOMEBREW_CURL_PATH: /gsc/btl/linuxbrew/bin/curl | |
| HOMEBREW_DEVELOPER: 1 | |
| HOMEBREW_GITHUB_API_TOKEN: set | |
| HOMEBREW_GIT_PATH: /gsc/btl/linuxbrew/bin/git | |
| HOMEBREW_LOGS: /gsc/btl/linuxbrew/var/log/homebrew | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
| HOMEBREW_SYSTEM_CURL_TOO_OLD: 1 | |
| HOMEBREW_VISUAL: gvim | |
| CPU: 144-core 64-bit skylake | |
| Homebrew Ruby: 2.3.7 => /projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby | |
| Clang: N/A | |
| Git: 2.19.0 => /gsc/btl/linuxbrew/bin/git | |
| Curl: 7.64.1 => /projects/btl_scratch/sjackman/brew/opt/curl/bin/curl | |
| Kernel: Linux 3.10.0-693.5.2.el7.x86_64 x86_64 GNU/Linux | |
| OS: CentOS Linux release 7.4.1708 (Core) (Core) | |
| Host glibc: 2.17 | |
| /usr/bin/gcc: 4.8.5 | |
| glibc: 2.23 | |
| gcc: 5.5.0_4 | |
| xorg: N/A |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: "config" scripts exist outside your system or Homebrew directories. | |
| `./configure` scripts often look for *-config scripts to determine if | |
| software packages are installed, and what additional flags to use when | |
| compiling and linking. | |
| Having additional scripts in your path can confuse software installed via | |
| Homebrew if the config script overrides a system or Homebrew provided | |
| script of the same name. We found the following "config" scripts: | |
| /gsc/btl/linuxbrew/bin/pkg-config | |
| /gsc/btl/linuxbrew/bin/libpng-config | |
| /gsc/btl/linuxbrew/bin/libpng16-config | |
| /gsc/btl/linuxbrew/bin/pcre2-config | |
| /gsc/btl/linuxbrew/bin/pcre-config | |
| /gsc/btl/linuxbrew/bin/xslt-config | |
| /gsc/btl/linuxbrew/bin/ncurses6-config | |
| /gsc/btl/linuxbrew/bin/ncursesw6-config | |
| /gsc/btl/linuxbrew/bin/xml2-config | |
| /gsc/btl/linuxbrew/bin/curl-config | |
| /gsc/btl/linuxbrew/bin/Magick++-config | |
| /gsc/btl/linuxbrew/bin/Magick-config | |
| /gsc/btl/linuxbrew/bin/MagickCore-config | |
| /gsc/btl/linuxbrew/bin/freetype-config | |
| /gsc/btl/linuxbrew/bin/gdlib-config | |
| /gsc/btl/linuxbrew/bin/gsl-config | |
| /gsc/btl/linuxbrew/bin/MagickWand-config | |
| /gsc/btl/linuxbrew/bin/Wand-config | |
| /gsc/btl/linuxbrew/bin/krb5-config | |
| /gsc/btl/linuxbrew/bin/apr-1-config | |
| /gsc/btl/linuxbrew/bin/genometools-config | |
| /gsc/btl/linuxbrew/bin/python3-config | |
| /gsc/btl/linuxbrew/bin/apu-1-config | |
| /gsc/btl/linuxbrew/bin/GraphicsMagick++-config | |
| /gsc/btl/linuxbrew/bin/GraphicsMagick-config | |
| /gsc/btl/linuxbrew/bin/GraphicsMagickWand-config | |
| /gsc/btl/linuxbrew/bin/guile-config | |
| /gsc/btl/linuxbrew/bin/autoopts-config | |
| /gsc/btl/linuxbrew/bin/python-config | |
| /gsc/btl/linuxbrew/bin/python2-config | |
| /gsc/btl/linuxbrew/bin/python2.7-config | |
| /gsc/btl/linuxbrew/bin/gpg-error-config | |
| /gsc/btl/linuxbrew/bin/icu-config | |
| /gsc/btl/linuxbrew/bin/vdb-config | |
| /gsc/btl/linuxbrew/bin/onig-config | |
| /gsc/btl/linuxbrew/bin/jemalloc-config | |
| /gsc/btl/linuxbrew/bin/gpgrt-config | |
| /gsc/btl/linuxbrew/bin/npth-config | |
| /gsc/btl/linuxbrew/bin/libgcrypt-config | |
| /gsc/btl/linuxbrew/bin/libassuan-config | |
| /gsc/btl/linuxbrew/bin/croco-0.6-config | |
| /gsc/btl/linuxbrew/bin/python3.7-config | |
| /gsc/btl/linuxbrew/bin/python3.7m-config | |
| /gsc/btl/linuxbrew/bin/ksba-config | |
| /gsc/btl/linuxbrew/bin/pcap-config | |
| /gsc/btl/linuxbrew/bin/llvm-config | |
| /gsc/btl/linuxbrew/bin/wx-config | |
| /gsc/btl/linuxbrew/bin/gts-config | |
| Warning: Your Homebrew's prefix is not /home/linuxbrew/.linuxbrew. | |
| Some of Homebrew's bottles (binary packages) can only be used with the default | |
| prefix (/home/linuxbrew/.linuxbrew). | |
| You will encounter build failures with some formulae. | |
| Please create pull requests instead of asking for help on Homebrew's GitHub, | |
| Discourse, Twitter or IRC. You are responsible for resolving any issues you | |
| experience, as you are running this unsupported configuration. | |
| Warning: Homebrew's bin was not found in your PATH. | |
| Consider setting the PATH for example like so | |
| echo 'export PATH="/projects/btl_scratch/sjackman/brew/bin:$PATH"' >> ~/.bash_profile | |
| Warning: Homebrew's sbin was not found in your PATH but you have installed | |
| formulae that put executables in /projects/btl_scratch/sjackman/brew/sbin. | |
| Consider setting the PATH for example like so | |
| echo 'export PATH="/projects/btl_scratch/sjackman/brew/sbin:$PATH"' >> ~/.bash_profile |
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| brewsci/bio/gmap-gsnap |
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| Formula: gmap-gsnap | |
| Tap: brewsci/bio | |
| Path: /projects/btl_scratch/sjackman/brew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/gmap-gsnap.rb |
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| 2019-04-24 09:36:54 -0700 | |
| ./configure | |
| --prefix=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15 | |
| checking package version... 2019-03-15 | |
| loading default site script ./config.site | |
| checking CFLAGS... not set by user so using default -O3 -fomit-frame-pointer | |
| checking build system type... x86_64-unknown-linux-gnu | |
| checking host system type... x86_64-unknown-linux-gnu | |
| checking target system type... x86_64-unknown-linux-gnu | |
| checking for non-Intel CPU... no | |
| checking for gcc... gcc-5 | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether gcc-5 accepts -g... yes | |
| checking for gcc-5 option to accept ISO C89... none needed | |
| checking whether gcc-5 understands -c and -o together... yes | |
| checking for special C compiler options needed for large files... no | |
| checking for _FILE_OFFSET_BITS value needed for large files... no | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking whether build environment is sane... yes | |
| checking for a thread-safe mkdir -p... /usr/bin/mkdir -p | |
| checking for gawk... gawk | |
| checking whether make sets $(MAKE)... yes | |
| checking for style of include used by make... GNU | |
| checking whether make supports nested variables... yes | |
| checking dependency style of gcc-5... gcc3 | |
| checking whether to enable maintainer-specific portions of Makefiles... no | |
| checking bindir... /projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/bin | |
| checking for a working version of perl... /usr/bin/perl | |
| checking for gcc... (cached) gcc-5 | |
| checking whether we are using the GNU C compiler... (cached) yes | |
| checking whether gcc-5 accepts -g... (cached) yes | |
| checking for gcc-5 option to accept ISO C89... (cached) none needed | |
| checking whether gcc-5 understands -c and -o together... (cached) yes | |
| checking how to print strings... printf | |
| checking for a sed that does not truncate output... /usr/bin/sed | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking for fgrep... /usr/bin/grep -F | |
| checking for ld used by gcc-5... /projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/shims/linux/super/ld | |
| checking if the linker (/projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/shims/linux/super/ld) is GNU ld... yes | |
| checking for BSD- or MS-compatible name lister (nm)... /projects/btl_scratch/sjackman/brew/opt/binutils/bin/nm -B | |
| checking the name lister (/projects/btl_scratch/sjackman/brew/opt/binutils/bin/nm -B) interface... BSD nm | |
| checking whether ln -s works... yes | |
| checking the maximum length of command line arguments... 1572864 | |
| checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop | |
| checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop | |
| checking for /projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/shims/linux/super/ld option to reload object files... -r | |
| checking for objdump... objdump | |
| checking how to recognize dependent libraries... pass_all | |
| checking for dlltool... dlltool | |
| checking how to associate runtime and link libraries... printf %s\n | |
| checking for ar... ar | |
| checking for archiver @FILE support... @ | |
| checking for strip... strip | |
| checking for ranlib... ranlib | |
| checking command to parse /projects/btl_scratch/sjackman/brew/opt/binutils/bin/nm -B output from gcc-5 object... ok | |
| checking for sysroot... no | |
| checking for a working dd... /usr/bin/dd | |
| checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 | |
| checking for mt... no | |
| checking if : is a manifest tool... no | |
| checking how to run the C preprocessor... gcc-5 -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking for dlfcn.h... yes | |
| checking for objdir... .libs | |
| checking if gcc-5 supports -fno-rtti -fno-exceptions... no | |
| checking for gcc-5 option to produce PIC... -fPIC -DPIC | |
| checking if gcc-5 PIC flag -fPIC -DPIC works... yes | |
| checking if gcc-5 static flag -static works... yes | |
| checking if gcc-5 supports -c -o file.o... yes | |
| checking if gcc-5 supports -c -o file.o... (cached) yes | |
| checking whether the gcc-5 linker (/projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/shims/linux/super/ld -m elf_x86_64) supports shared libraries... yes | |
| checking whether -lc should be explicitly linked in... no | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking whether stripping libraries is possible... yes | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... yes | |
| checking for C compiler vendor... gnu | |
| checking for rint in -lm... yes | |
| checking whether to use MPI_File for input... not specified so enabled by default | |
| checking for pthreads feature... not specified so enabled by default | |
| checking for the pthreads library -lpthreads... no | |
| checking whether pthreads work without any flags... no | |
| checking whether pthreads work with -Kthread... no | |
| checking whether pthreads work with -kthread... no | |
| checking for the pthreads library -llthread... no | |
| checking whether pthreads work with -pthread... yes | |
| checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE | |
| checking if more special flags are required for pthreads... no | |
| checking for cc_r... gcc-5 | |
| checking for ANSI C header files... (cached) yes | |
| checking for dirent.h that defines DIR... yes | |
| checking for library containing opendir... none required | |
| checking fcntl.h usability... yes | |
| checking fcntl.h presence... yes | |
| checking for fcntl.h... yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking stddef.h usability... yes | |
| checking stddef.h presence... yes | |
| checking for stddef.h... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking for strings.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/types.h... (cached) yes | |
| checking for inline... inline | |
| checking whether byte ordering is bigendian... no | |
| checking for an ANSI C-conforming const... yes | |
| checking for working volatile... yes | |
| checking for size_t... yes | |
| checking for off_t... yes | |
| checking for caddr_t... yes | |
| checking size of unsigned long... 8 | |
| checking size of unsigned long long... 8 | |
| checking size of off_t... 8 | |
| checking for _LARGEFILE_SOURCE value needed for large files... no | |
| checking whether alloca is enabled... not specified so disabled by default | |
| checking whether mmap is enabled... not specified so enabled by default | |
| checking for working mmap with MAP_FIXED... yes | |
| checking for working mmap with MAP_VARIABLE... no | |
| checking for MAP_FILE in mmap... yes | |
| checking for MAP_VARIABLE in mmap... no | |
| checking for MAP_SHARED in mmap... yes | |
| checking for MAP_PRIVATE in mmap... yes | |
| checking for MAP_FAILED in mmap... yes | |
| checking for MADV_DONTNEED in madvise... yes | |
| checking for MADV_WILLNEED in madvise... yes | |
| checking for MADV_RANDOM in madvise... yes | |
| checking for MADV_SEQUENTIAL in madvise... yes | |
| checking for SHM_NORESERVE in shmget... yes | |
| checking for ceil... yes | |
| checking for floor... yes | |
| checking for index... yes | |
| checking for log... yes | |
| checking for madvise... yes | |
| checking for memcpy... yes | |
| checking for memmove... yes | |
| checking for memset... yes | |
| checking for munmap... yes | |
| checking for pow... yes | |
| checking for rint... yes | |
| checking for stat64... yes | |
| checking for strtoul... yes | |
| checking for sysconf... yes | |
| checking for sysctl... yes | |
| checking for sigaction... yes | |
| checking for shmget... yes | |
| checking for shmctl... yes | |
| checking for shmat... yes | |
| checking for shmdt... yes | |
| checking for semget... yes | |
| checking for semctl... yes | |
| checking for semop... yes | |
| checking for struct stat64... no | |
| checking for pagesize via sysconf... yes | |
| checking for pagesize via sysctl... no | |
| checking whether fopen accepts "b" mode... yes | |
| checking whether fopen accepts "t" mode... yes | |
| checking whether C compiler accepts -O3 -fomit-frame-pointer -mpopcnt... yes | |
| checking for __builtin_popcount... yes | |
| checking for __builtin_clz... yes | |
| checking for __builtin_ctz... yes | |
| checking for bsr instruction in assembly... yes | |
| checking compiler is defective and requires an immediate in sse2 shift commands... no | |
| checking for _mm_extract_epi64... yes | |
| checking for _mm_popcnt_u64... yes | |
| checking for whether simd is enabled... not specified so enabled by default | |
| checking for sse2 support... yes | |
| checking for ssse3 support... yes | |
| checking for sse4.1 support... yes | |
| checking for sse4.2 support... yes | |
| checking for popcnt support... yes | |
| checking for bmi1 support... no | |
| checking for avx2 support... yes | |
| checking for bmi2 support... no | |
| checking for avx512 support... yes | |
| checking whether C compiler accepts -msse2... yes | |
| checking for emmintrin.h header file... yes | |
| checking whether C compiler accepts -msse2 -mssse3... yes | |
| checking for tmmintrin.h header file... yes | |
| checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes | |
| checking for smmintrin.h header file... yes | |
| checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes | |
| checking for nmmintrin.h header file... yes | |
| checking for mm_popcnt support... yes | |
| checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2... yes | |
| checking for immintrin.h header file... yes | |
| checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd... yes | |
| checking for nmmintrin.h header file... yes | |
| checking gmapdb... /projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share | |
| checking MAX_STACK_READLENGTH... 300 | |
| checking for zlib support... enabled | |
| checking zlib.h usability... yes | |
| checking zlib.h presence... yes | |
| checking for zlib.h... yes | |
| checking for gzopen in -lz... yes | |
| checking for gzeof in -lz... yes | |
| checking for gzgetc in -lz... yes | |
| checking for gzgets in -lz... yes | |
| checking for gzclose in -lz... yes | |
| checking if zlib package is complete... working | |
| checking for gzbuffer in -lz... yes | |
| checking for bzlib support... enabled | |
| checking bzlib.h usability... yes | |
| checking bzlib.h presence... yes | |
| checking for bzlib.h... yes | |
| checking for BZ2_bzReadOpen in -lbz2... yes | |
| checking for BZ2_bzRead in -lbz2... yes | |
| checking for BZ2_bzReadClose in -lbz2... yes | |
| checking if bzlib package is complete... working | |
| checking that generated files are newer than configure... done | |
| configure: creating ./config.status | |
| config.status: creating Makefile | |
| config.status: creating src/Makefile | |
| config.status: creating util/Makefile | |
| config.status: creating util/gmap_compress.pl | |
| config.status: creating util/gmap_uncompress.pl | |
| config.status: creating util/gmap_process.pl | |
| config.status: creating util/gmap_build.pl | |
| config.status: creating util/gmap_reassemble.pl | |
| config.status: creating util/md_coords.pl | |
| config.status: creating util/fa_coords.pl | |
| config.status: creating util/psl_splicesites.pl | |
| config.status: creating util/psl_introns.pl | |
| config.status: creating util/psl_genes.pl | |
| config.status: creating util/ensembl_genes.pl | |
| config.status: creating util/gtf_splicesites.pl | |
| config.status: creating util/gtf_transcript_splicesites.pl | |
| config.status: creating util/gtf_introns.pl | |
| config.status: creating util/gtf_genes.pl | |
| config.status: creating util/gff3_splicesites.pl | |
| config.status: creating util/gff3_introns.pl | |
| config.status: creating util/gff3_genes.pl | |
| config.status: creating util/dbsnp_iit.pl | |
| config.status: creating util/gvf_iit.pl | |
| config.status: creating util/vcf_iit.pl | |
| config.status: creating util/sam-exons.pl | |
| config.status: creating tests/Makefile | |
| config.status: creating tests/align.test | |
| config.status: creating tests/coords1.test | |
| config.status: creating tests/setup1.test | |
| config.status: creating tests/iit.test | |
| config.status: creating src/config.h | |
| config.status: executing depfiles commands | |
| config.status: executing libtool commands | |
| checking standard compiler and flags to be used... gcc-5 -O3 -fomit-frame-pointer | |
| checking standard linker flags to be used... | |
| checking pthread compiler flags to be used... -pthread | |
| checking popcnt flags to be used... -mpopcnt | |
| checking compile level... avx512 | |
| checking AVX512 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd |
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| gcc-5 called with: -E /var/tmp/sjackman/cgGwLf78/dummy.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E /var/tmp/sjackman/cgGwLf78/dummy.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: --version | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native --version -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -v | |
| superenv executed: gcc-5 -v | |
| gcc-5 called with: -V | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -V -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -qversion | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -qversion -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -g conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -g conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c conftest.c -o conftest2.o | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c conftest.c -o conftest2.o -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c conftest.c -o conftest2.o | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c conftest.c -o conftest2.o -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: --version | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native --version -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -v | |
| superenv executed: gcc-5 -v | |
| gcc-5 called with: -V | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -V -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -qversion | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -qversion -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -print-prog-name=ld | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -print-prog-name=ld -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| ld called with: -v | |
| superenv executed: ld -v | |
| ld called with: -v | |
| superenv executed: ld -v | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c conftstm.o | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c conftstm.o -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer -fno-rtti -fno-exceptions conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer -fno-rtti -fno-exceptions conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer -fPIC -DPIC -DPIC conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer -fPIC -DPIC -DPIC conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -static conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -static conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer -o out/conftest2.o conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer -o out/conftest2.o conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| ld called with: -m elf_x86_64 --help | |
| superenv added: -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: ld -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so -m elf_x86_64 --help | |
| ld called with: -m elf_x86_64 -v | |
| superenv added: -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: ld -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so -m elf_x86_64 -v | |
| ld called with: -m elf_x86_64 --help | |
| superenv added: -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: ld -L/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -rpath=/projects/btl_scratch/sjackman/brew/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib --dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so -m elf_x86_64 --help | |
| gcc-5 called with: -V | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -V -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -print-search-dirs | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -print-search-dirs -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -O3 -fomit-frame-pointer -print-multi-os-directory | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -O3 -fomit-frame-pointer -print-multi-os-directory -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -Wl,-rpath -Wl,/foo conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -Wl,-rpath -Wl,/foo conftest.c -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lpthreads -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lpthreads -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -Kthread conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -Kthread conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -kthread conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -kthread conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -llthread -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -llthread -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -pthread conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -pthread conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -pthread conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -pthread conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer -O3 -fomit-frame-pointer -mpopcnt conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer -O3 -fomit-frame-pointer -mpopcnt conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer -mpopcnt conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 -mssse3 conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 -mssse3 conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 -mssse3 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 -mssse3 -msse4.1 conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 -mssse3 -msse4.1 conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 -mssse3 -msse4.1 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 -msse4.1 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd conftest.c -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd conftest.c -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lz -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -c -O3 -fomit-frame-pointer conftest.c | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -O2 -march=native -c -O3 -fomit-frame-pointer conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -E conftest.c | |
| superenv added: -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -E conftest.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| gcc-5 called with: -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm | |
| superenv added: -pipe -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
| superenv executed: gcc-5 -pipe -O2 -march=native -o conftest -O3 -fomit-frame-pointer conftest.c -lbz2 -lm -isystem/projects/btl_scratch/sjackman/brew/include -L/projects/btl_scratch/sjackman/brew/lib -B/projects/btl_scratch/sjackman/brew/opt/glibc/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/xz/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/bzip2/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/zlib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/openssl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/curl/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/htslib/lib -Wl,-rpath=/projects/btl_scratch/sjackman/brew/opt/ncurses/lib -Wl,--dynamic-linker=/projects/btl_scratch/sjackman/brew/lib/ld.so | |
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| 2019-04-24 09:37:30 -0700 | |
| make | |
| Making all in src | |
| make[1]: Entering directory `/var/tmp/sjackman/gmap-gsnap-20190424-90610-ufa8hn/gmap-2019-03-15/src' | |
| /usr/bin/make all-am | |
| make[2]: Entering directory `/var/tmp/sjackman/gmap-gsnap-20190424-90610-ufa8hn/gmap-2019-03-15/src' | |
| gcc-5 -DHAVE_CONFIG_H -I. -DMAIN=1 -O3 -fomit-frame-pointer -MT cpuid-cpuid.o -MD -MP -MF .deps/cpuid-cpuid.Tpo -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmap-cpuid.o -MD -MP -MF .deps/gmap-cpuid.Tpo -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmap-gmap_select.o -MD -MP -MF .deps/gmap-gmap_select.Tpo -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmapl-cpuid.o -MD -MP -MF .deps/gmapl-cpuid.Tpo -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmapl-gmapl_select.o -MD -MP -MF .deps/gmapl-gmapl_select.Tpo -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-semaphore.o -MD -MP -MF .deps/get_genome-semaphore.Tpo -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-fopen.o -MD -MP -MF .deps/get_genome-fopen.Tpo -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getline.o -MD -MP -MF .deps/get_genome-getline.Tpo -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-semaphore.o -MD -MP -MF .deps/gmapindex-semaphore.Tpo -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-fopen.o -MD -MP -MF .deps/gmapindex-fopen.Tpo -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome128_consec.o -MD -MP -MF .deps/gmapindex-genome128_consec.Tpo -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-bitpack64-incr.Tpo -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-indexdb.o -MD -MP -MF .deps/gmapindex-indexdb.Tpo -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-indexdb-write.o -MD -MP -MF .deps/gmapindex-indexdb-write.Tpo -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-access.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-access.Tpo -c -o gmapindex-epu16-bitpack64-access.o `test -f 'epu16-bitpack64-access.c' || echo './'`epu16-bitpack64-access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-incr.Tpo -c -o gmapindex-epu16-bitpack64-incr.o `test -f 'epu16-bitpack64-incr.c' || echo './'`epu16-bitpack64-incr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-write.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-write.Tpo -c -o gmapindex-epu16-bitpack64-write.o `test -f 'epu16-bitpack64-write.c' || echo './'`epu16-bitpack64-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-localdb-write.o -MD -MP -MF .deps/gmapindex-localdb-write.Tpo -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo './'`localdb-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-table.o -MD -MP -MF .deps/gmapindex-table.Tpo -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableuint.o -MD -MP -MF .deps/gmapindex-tableuint.Tpo -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableuint8.o -MD -MP -MF .deps/gmapindex-tableuint8.Tpo -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableint.o -MD -MP -MF .deps/gmapindex-tableint.Tpo -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-chrom.o -MD -MP -MF .deps/gmapindex-chrom.Tpo -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-segmentpos.o -MD -MP -MF .deps/gmapindex-segmentpos.Tpo -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-uint8list.o -MD -MP -MF .deps/gmapindex-uint8list.Tpo -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-parserange.o -MD -MP -MF .deps/gmapindex-parserange.Tpo -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-getline.o -MD -MP -MF .deps/gmapindex-getline.Tpo -c -o gmapindex-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-gmapindex.o -MD -MP -MF .deps/gmapindex-gmapindex.Tpo -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-except.o -MD -MP -MF .deps/iit_store-except.Tpo -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-assert.o -MD -MP -MF .deps/iit_store-assert.Tpo -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-mem.o -MD -MP -MF .deps/iit_store-mem.Tpo -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-intlist.o -MD -MP -MF .deps/iit_store-intlist.Tpo -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-list.o -MD -MP -MF .deps/iit_store-list.Tpo -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-littleendian.o -MD -MP -MF .deps/iit_store-littleendian.Tpo -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-bigendian.o -MD -MP -MF .deps/iit_store-bigendian.Tpo -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-univinterval.o -MD -MP -MF .deps/iit_store-univinterval.Tpo -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-interval.o -MD -MP -MF .deps/iit_store-interval.Tpo -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-uintlist.o -MD -MP -MF .deps/iit_store-uintlist.Tpo -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-stopwatch.o -MD -MP -MF .deps/iit_store-stopwatch.Tpo -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-semaphore.o -MD -MP -MF .deps/iit_store-semaphore.Tpo -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-access.o -MD -MP -MF .deps/iit_store-access.Tpo -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-doublelist.o -MD -MP -MF .deps/iit_store-doublelist.Tpo -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit-write-univ.o -MD -MP -MF .deps/iit_store-iit-write-univ.Tpo -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit-write.o -MD -MP -MF .deps/iit_store-iit-write.Tpo -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-tableint.o -MD -MP -MF .deps/iit_store-tableint.Tpo -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-table.o -MD -MP -MF .deps/iit_store-table.Tpo -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-chrom.o -MD -MP -MF .deps/iit_store-chrom.Tpo -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getline.o -MD -MP -MF .deps/iit_store-getline.Tpo -c -o iit_store-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getopt.o -MD -MP -MF .deps/iit_store-getopt.Tpo -c -o iit_store-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getopt1.o -MD -MP -MF .deps/iit_store-getopt1.Tpo -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit_store.o -MD -MP -MF .deps/iit_store-iit_store.Tpo -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-except.o -MD -MP -MF .deps/iit_get-except.Tpo -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-assert.o -MD -MP -MF .deps/iit_get-assert.Tpo -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-mem.o -MD -MP -MF .deps/iit_get-mem.Tpo -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-intlist.o -MD -MP -MF .deps/iit_get-intlist.Tpo -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-list.o -MD -MP -MF .deps/iit_get-list.Tpo -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-littleendian.o -MD -MP -MF .deps/iit_get-littleendian.Tpo -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-bigendian.o -MD -MP -MF .deps/iit_get-bigendian.Tpo -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-univinterval.o -MD -MP -MF .deps/iit_get-univinterval.Tpo -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-interval.o -MD -MP -MF .deps/iit_get-interval.Tpo -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-uintlist.o -MD -MP -MF .deps/iit_get-uintlist.Tpo -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-stopwatch.o -MD -MP -MF .deps/iit_get-stopwatch.Tpo -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-semaphore.o -MD -MP -MF .deps/iit_get-semaphore.Tpo -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-access.o -MD -MP -MF .deps/iit_get-access.Tpo -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-filestring.o -MD -MP -MF .deps/iit_get-filestring.Tpo -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit-read-univ.o -MD -MP -MF .deps/iit_get-iit-read-univ.Tpo -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit-read.o -MD -MP -MF .deps/iit_get-iit-read.Tpo -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-parserange.o -MD -MP -MF .deps/iit_get-parserange.Tpo -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getline.o -MD -MP -MF .deps/iit_get-getline.Tpo -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getopt.o -MD -MP -MF .deps/iit_get-getopt.Tpo -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getopt1.o -MD -MP -MF .deps/iit_get-getopt1.Tpo -c -o iit_get-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit_get.o -MD -MP -MF .deps/iit_get-iit_get.Tpo -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-except.o -MD -MP -MF .deps/iit_dump-except.Tpo -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-assert.o -MD -MP -MF .deps/iit_dump-assert.Tpo -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-mem.o -MD -MP -MF .deps/iit_dump-mem.Tpo -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-littleendian.o -MD -MP -MF .deps/iit_dump-littleendian.Tpo -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-bigendian.o -MD -MP -MF .deps/iit_dump-bigendian.Tpo -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-intlist.o -MD -MP -MF .deps/iit_dump-intlist.Tpo -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-list.o -MD -MP -MF .deps/iit_dump-list.Tpo -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-univinterval.o -MD -MP -MF .deps/iit_dump-univinterval.Tpo -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-interval.o -MD -MP -MF .deps/iit_dump-interval.Tpo -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-uintlist.o -MD -MP -MF .deps/iit_dump-uintlist.Tpo -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-stopwatch.o -MD -MP -MF .deps/iit_dump-stopwatch.Tpo -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-semaphore.o -MD -MP -MF .deps/iit_dump-semaphore.Tpo -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-access.o -MD -MP -MF .deps/iit_dump-access.Tpo -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-filestring.o -MD -MP -MF .deps/iit_dump-filestring.Tpo -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit-read-univ.o -MD -MP -MF .deps/iit_dump-iit-read-univ.Tpo -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit-read.o -MD -MP -MF .deps/iit_dump-iit-read.Tpo -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/iit_get-assert.Tpo .deps/iit_get-assert.Po | |
| mv -f .deps/iit_dump-assert.Tpo .deps/iit_dump-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-parserange.o -MD -MP -MF .deps/iit_dump-parserange.Tpo -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-getopt.o -MD -MP -MF .deps/iit_dump-getopt.Tpo -c -o iit_dump-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-getopt1.o -MD -MP -MF .deps/iit_dump-getopt1.Tpo -c -o iit_dump-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/gmapindex-assert.Tpo .deps/gmapindex-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit_dump.o -MD -MP -MF .deps/iit_dump-iit_dump.Tpo -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c | |
| mv -f .deps/iit_store-assert.Tpo .deps/iit_store-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnap-cpuid.o -MD -MP -MF .deps/gsnap-cpuid.Tpo -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c | |
| mv -f .deps/gmap-cpuid.Tpo .deps/gmap-cpuid.Po | |
| mv -f .deps/gmapl-cpuid.Tpo .deps/gmapl-cpuid.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnap-gsnap_select.o -MD -MP -MF .deps/gsnap-gsnap_select.Tpo -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c | |
| mv -f .deps/cpuid-cpuid.Tpo .deps/cpuid-cpuid.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnapl-cpuid.o -MD -MP -MF .deps/gsnapl-cpuid.Tpo -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnapl-gsnapl_select.o -MD -MP -MF .deps/gsnapl-gsnapl_select.Tpo -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c | |
| mv -f .deps/iit_store-littleendian.Tpo .deps/iit_store-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-except.o -MD -MP -MF .deps/snpindex-except.Tpo -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/iit_get-littleendian.Tpo .deps/iit_get-littleendian.Po | |
| mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po | |
| mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po | |
| mv -f .deps/gmapindex-littleendian.Tpo .deps/gmapindex-littleendian.Po | |
| mv -f .deps/iit_store-getopt.Tpo .deps/iit_store-getopt.Po | |
| mv -f .deps/iit_get-getopt.Tpo .deps/iit_get-getopt.Po | |
| mv -f .deps/iit_dump-littleendian.Tpo .deps/iit_dump-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-assert.o -MD -MP -MF .deps/snpindex-assert.Tpo -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-mem.o -MD -MP -MF .deps/snpindex-mem.Tpo -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-intlist.o -MD -MP -MF .deps/snpindex-intlist.Tpo -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-list.o -MD -MP -MF .deps/snpindex-list.Tpo -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-littleendian.o -MD -MP -MF .deps/snpindex-littleendian.Tpo -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bigendian.o -MD -MP -MF .deps/snpindex-bigendian.Tpo -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-univinterval.o -MD -MP -MF .deps/snpindex-univinterval.Tpo -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/iit_get-getopt1.Tpo .deps/iit_get-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-interval.o -MD -MP -MF .deps/snpindex-interval.Tpo -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-uintlist.o -MD -MP -MF .deps/snpindex-uintlist.Tpo -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/iit_store-getopt1.Tpo .deps/iit_store-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-stopwatch.o -MD -MP -MF .deps/snpindex-stopwatch.Tpo -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/iit_store-bigendian.Tpo .deps/iit_store-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-semaphore.o -MD -MP -MF .deps/snpindex-semaphore.Tpo -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/iit_dump-bigendian.Tpo .deps/iit_dump-bigendian.Po | |
| mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po | |
| mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-access.o -MD -MP -MF .deps/snpindex-access.Tpo -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-filestring.o -MD -MP -MF .deps/snpindex-filestring.Tpo -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/iit_get-bigendian.Tpo .deps/iit_get-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-iit-read-univ.o -MD -MP -MF .deps/snpindex-iit-read-univ.Tpo -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-iit-read.o -MD -MP -MF .deps/snpindex-iit-read.Tpo -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/iit_dump-stopwatch.Tpo .deps/iit_dump-stopwatch.Po | |
| mv -f .deps/iit_store-stopwatch.Tpo .deps/iit_store-stopwatch.Po | |
| mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genomicpos.o -MD -MP -MF .deps/snpindex-genomicpos.Tpo -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-compress.o -MD -MP -MF .deps/snpindex-compress.Tpo -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-compress-write.o -MD -MP -MF .deps/snpindex-compress-write.Tpo -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-popcount.o -MD -MP -MF .deps/snpindex-popcount.Tpo -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/iit_get-stopwatch.Tpo .deps/iit_get-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome128_hr.o -MD -MP -MF .deps/snpindex-genome128_hr.Tpo -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome128_consec.o -MD -MP -MF .deps/snpindex-genome128_consec.Tpo -c -o snpindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-read.o -MD -MP -MF .deps/snpindex-bitpack64-read.Tpo -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| mv -f .deps/iit_store-doublelist.Tpo .deps/iit_store-doublelist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-readtwo.o -MD -MP -MF .deps/snpindex-bitpack64-readtwo.Tpo -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/gmapindex-fopen.Tpo .deps/gmapindex-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-access.o -MD -MP -MF .deps/snpindex-bitpack64-access.Tpo -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/get_genome-fopen.Tpo .deps/get_genome-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-incr.o -MD -MP -MF .deps/snpindex-bitpack64-incr.Tpo -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c | |
| mv -f .deps/gmapindex-epu16-bitpack64-access.Tpo .deps/gmapindex-epu16-bitpack64-access.Po | |
| mv -f .deps/iit_store-getline.Tpo .deps/iit_store-getline.Po | |
| mv -f .deps/get_genome-getline.Tpo .deps/get_genome-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-write.o -MD -MP -MF .deps/snpindex-bitpack64-write.Tpo -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-indexdb.o -MD -MP -MF .deps/snpindex-indexdb.Tpo -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-indexdb-write.o -MD -MP -MF .deps/snpindex-indexdb-write.Tpo -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c | |
| mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po | |
| mv -f .deps/iit_get-univinterval.Tpo .deps/iit_get-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-chrom.o -MD -MP -MF .deps/snpindex-chrom.Tpo -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-md5.o -MD -MP -MF .deps/snpindex-md5.Tpo -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| mv -f .deps/gmapindex-getline.Tpo .deps/gmapindex-getline.Po | |
| mv -f .deps/iit_store-univinterval.Tpo .deps/iit_store-univinterval.Po | |
| mv -f .deps/iit_get-getline.Tpo .deps/iit_get-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bzip2.o -MD -MP -MF .deps/snpindex-bzip2.Tpo -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-fopen.o -MD -MP -MF .deps/snpindex-fopen.Tpo -c -o snpindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po | |
| mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-sequence.o -MD -MP -MF .deps/snpindex-sequence.Tpo -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| mv -f .deps/iit_dump-univinterval.Tpo .deps/iit_dump-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome.o -MD -MP -MF .deps/snpindex-genome.Tpo -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-datadir.o -MD -MP -MF .deps/snpindex-datadir.Tpo -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-parserange.o -MD -MP -MF .deps/snpindex-parserange.Tpo -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po | |
| mv -f .deps/iit_dump-interval.Tpo .deps/iit_dump-interval.Po | |
| mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po | |
| mv -f .deps/iit_store-interval.Tpo .deps/iit_store-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getline.o -MD -MP -MF .deps/snpindex-getline.Tpo -c -o snpindex-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getopt.o -MD -MP -MF .deps/snpindex-getopt.Tpo -c -o snpindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getopt1.o -MD -MP -MF .deps/snpindex-getopt1.Tpo -c -o snpindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/iit_get-interval.Tpo .deps/iit_get-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-snpindex.o -MD -MP -MF .deps/snpindex-snpindex.Tpo -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c | |
| mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-except.o -MD -MP -MF .deps/cmetindex-except.Tpo -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-assert.o -MD -MP -MF .deps/cmetindex-assert.Tpo -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/gmapindex-tableint.Tpo .deps/gmapindex-tableint.Po | |
| mv -f .deps/iit_store-tableint.Tpo .deps/iit_store-tableint.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-mem.o -MD -MP -MF .deps/cmetindex-mem.Tpo -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/gmapindex-tableuint.Tpo .deps/gmapindex-tableuint.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-littleendian.o -MD -MP -MF .deps/cmetindex-littleendian.Tpo -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bigendian.o -MD -MP -MF .deps/cmetindex-bigendian.Tpo -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/gmapindex-tableuint8.Tpo .deps/gmapindex-tableuint8.Po | |
| mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genomicpos.o -MD -MP -MF .deps/cmetindex-genomicpos.Tpo -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-stopwatch.o -MD -MP -MF .deps/cmetindex-stopwatch.Tpo -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/gmapindex-bitpack64-readtwo.Tpo .deps/gmapindex-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-semaphore.o -MD -MP -MF .deps/cmetindex-semaphore.Tpo -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po | |
| mv -f .deps/iit_store-chrom.Tpo .deps/iit_store-chrom.Po | |
| mv -f .deps/gmapindex-uint8list.Tpo .deps/gmapindex-uint8list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-access.o -MD -MP -MF .deps/cmetindex-access.Tpo -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-univinterval.o -MD -MP -MF .deps/cmetindex-univinterval.Tpo -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-interval.o -MD -MP -MF .deps/cmetindex-interval.Tpo -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-filestring.o -MD -MP -MF .deps/cmetindex-filestring.Tpo -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-iit-read-univ.o -MD -MP -MF .deps/cmetindex-iit-read-univ.Tpo -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po | |
| mv -f .deps/iit_get-mem.Tpo .deps/iit_get-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-iit-read.o -MD -MP -MF .deps/cmetindex-iit-read.Tpo -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-compress.o -MD -MP -MF .deps/cmetindex-compress.Tpo -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/iit_store-except.Tpo .deps/iit_store-except.Po | |
| mv -f .deps/iit_dump-mem.Tpo .deps/iit_dump-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-compress-write.o -MD -MP -MF .deps/cmetindex-compress-write.Tpo -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| mv -f .deps/gmapindex-epu16-bitpack64-write.Tpo .deps/gmapindex-epu16-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-popcount.o -MD -MP -MF .deps/cmetindex-popcount.Tpo -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/iit_store-uintlist.Tpo .deps/iit_store-uintlist.Po | |
| mv -f .deps/iit_dump-except.Tpo .deps/iit_dump-except.Po | |
| mv -f .deps/iit_dump-uintlist.Tpo .deps/iit_dump-uintlist.Po | |
| mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome128_hr.o -MD -MP -MF .deps/cmetindex-genome128_hr.Tpo -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome128_consec.o -MD -MP -MF .deps/cmetindex-genome128_consec.Tpo -c -o cmetindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-read.o -MD -MP -MF .deps/cmetindex-bitpack64-read.Tpo -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-readtwo.o -MD -MP -MF .deps/cmetindex-bitpack64-readtwo.Tpo -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-access.o -MD -MP -MF .deps/cmetindex-bitpack64-access.Tpo -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po | |
| mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-bitpack64-incr.Tpo -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-write.o -MD -MP -MF .deps/cmetindex-bitpack64-write.Tpo -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c | |
| mv -f .deps/iit_store-mem.Tpo .deps/iit_store-mem.Po | |
| mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po | |
| mv -f .deps/iit_dump-list.Tpo .deps/iit_dump-list.Po | |
| mv -f .deps/iit_get-except.Tpo .deps/iit_get-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-read.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-read.Tpo -c -o cmetindex-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| mv -f .deps/gmapindex-mem.Tpo .deps/gmapindex-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-access.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-access.Tpo -c -o cmetindex-epu16-bitpack64-access.o `test -f 'epu16-bitpack64-access.c' || echo './'`epu16-bitpack64-access.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-incr.Tpo -c -o cmetindex-epu16-bitpack64-incr.o `test -f 'epu16-bitpack64-incr.c' || echo './'`epu16-bitpack64-incr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-write.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-write.Tpo -c -o cmetindex-epu16-bitpack64-write.o `test -f 'epu16-bitpack64-write.c' || echo './'`epu16-bitpack64-write.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-indexdb.o -MD -MP -MF .deps/cmetindex-indexdb.Tpo -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-indexdb-write.o -MD -MP -MF .deps/cmetindex-indexdb-write.Tpo -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c | |
| mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-localdb.o -MD -MP -MF .deps/cmetindex-localdb.Tpo -c -o cmetindex-localdb.o `test -f 'localdb.c' || echo './'`localdb.c | |
| mv -f .deps/iit_store-list.Tpo .deps/iit_store-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-cmet.o -MD -MP -MF .deps/cmetindex-cmet.Tpo -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c | |
| mv -f .deps/iit_get-uintlist.Tpo .deps/iit_get-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-md5.o -MD -MP -MF .deps/cmetindex-md5.Tpo -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| mv -f .deps/gmapindex-chrom.Tpo .deps/gmapindex-chrom.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bzip2.o -MD -MP -MF .deps/cmetindex-bzip2.Tpo -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/iit_store-table.Tpo .deps/iit_store-table.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-fopen.o -MD -MP -MF .deps/cmetindex-fopen.Tpo -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/gmapindex-table.Tpo .deps/gmapindex-table.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-sequence.o -MD -MP -MF .deps/cmetindex-sequence.Tpo -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| mv -f .deps/iit_get-filestring.Tpo .deps/iit_get-filestring.Po | |
| mv -f .deps/iit_get-list.Tpo .deps/iit_get-list.Po | |
| mv -f .deps/gmapindex-bitpack64-read.Tpo .deps/gmapindex-bitpack64-read.Po | |
| mv -f .deps/iit_get-semaphore.Tpo .deps/iit_get-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome.o -MD -MP -MF .deps/cmetindex-genome.Tpo -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-uintlist.o -MD -MP -MF .deps/cmetindex-uintlist.Tpo -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/iit_store-semaphore.Tpo .deps/iit_store-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-intlist.o -MD -MP -MF .deps/cmetindex-intlist.Tpo -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-uint8list.o -MD -MP -MF .deps/cmetindex-uint8list.Tpo -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-list.o -MD -MP -MF .deps/cmetindex-list.Tpo -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/gmapindex-semaphore.Tpo .deps/gmapindex-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-datadir.o -MD -MP -MF .deps/cmetindex-datadir.Tpo -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| mv -f .deps/get_genome-semaphore.Tpo .deps/get_genome-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-parserange.o -MD -MP -MF .deps/cmetindex-parserange.Tpo -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/iit_dump-semaphore.Tpo .deps/iit_dump-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getline.o -MD -MP -MF .deps/cmetindex-getline.Tpo -c -o cmetindex-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getopt.o -MD -MP -MF .deps/cmetindex-getopt.Tpo -c -o cmetindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po | |
| mv -f .deps/iit_dump-filestring.Tpo .deps/iit_dump-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getopt1.o -MD -MP -MF .deps/cmetindex-getopt1.Tpo -c -o cmetindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-cmetindex.o -MD -MP -MF .deps/cmetindex-cmetindex.Tpo -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c | |
| mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-except.o -MD -MP -MF .deps/atoiindex-except.Tpo -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/iit_dump-intlist.Tpo .deps/iit_dump-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-assert.o -MD -MP -MF .deps/atoiindex-assert.Tpo -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-mem.o -MD -MP -MF .deps/atoiindex-mem.Tpo -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-littleendian.o -MD -MP -MF .deps/atoiindex-littleendian.Tpo -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po | |
| mv -f .deps/iit_get-intlist.Tpo .deps/iit_get-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bigendian.o -MD -MP -MF .deps/atoiindex-bigendian.Tpo -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genomicpos.o -MD -MP -MF .deps/atoiindex-genomicpos.Tpo -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/iit_store-intlist.Tpo .deps/iit_store-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-stopwatch.o -MD -MP -MF .deps/atoiindex-stopwatch.Tpo -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/gmapindex-segmentpos.Tpo .deps/gmapindex-segmentpos.Po | |
| mv -f .deps/gmapindex-epu16-bitpack64-incr.Tpo .deps/gmapindex-epu16-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-semaphore.o -MD -MP -MF .deps/atoiindex-semaphore.Tpo -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-access.o -MD -MP -MF .deps/atoiindex-access.Tpo -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/gmapl-gmapl_select.Tpo .deps/gmapl-gmapl_select.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-univinterval.o -MD -MP -MF .deps/atoiindex-univinterval.Tpo -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/gmap-gmap_select.Tpo .deps/gmap-gmap_select.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-interval.o -MD -MP -MF .deps/atoiindex-interval.Tpo -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/gmapindex-parserange.Tpo .deps/gmapindex-parserange.Po | |
| mv -f .deps/get_genome-parserange.Tpo .deps/get_genome-parserange.Po | |
| mv -f .deps/gmapindex-localdb-write.Tpo .deps/gmapindex-localdb-write.Po | |
| mv -f .deps/iit_get-parserange.Tpo .deps/iit_get-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-filestring.o -MD -MP -MF .deps/atoiindex-filestring.Tpo -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-iit-read-univ.o -MD -MP -MF .deps/atoiindex-iit-read-univ.Tpo -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-iit-read.o -MD -MP -MF .deps/atoiindex-iit-read.Tpo -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-compress.o -MD -MP -MF .deps/atoiindex-compress.Tpo -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/iit_store-iit-write-univ.Tpo .deps/iit_store-iit-write-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-compress-write.o -MD -MP -MF .deps/atoiindex-compress-write.Tpo -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-popcount.o -MD -MP -MF .deps/atoiindex-popcount.Tpo -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/gmapindex-bitpack64-access.Tpo .deps/gmapindex-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome128_hr.o -MD -MP -MF .deps/atoiindex-genome128_hr.Tpo -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome128_consec.o -MD -MP -MF .deps/atoiindex-genome128_consec.Tpo -c -o atoiindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| mv -f .deps/gmapindex-bitpack64-write.Tpo .deps/gmapindex-bitpack64-write.Po | |
| mv -f .deps/gmapindex-genome128_consec.Tpo .deps/gmapindex-genome128_consec.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-read.o -MD -MP -MF .deps/atoiindex-bitpack64-read.Tpo -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-readtwo.o -MD -MP -MF .deps/atoiindex-bitpack64-readtwo.Tpo -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-access.o -MD -MP -MF .deps/atoiindex-bitpack64-access.Tpo -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-bitpack64-incr.Tpo -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c | |
| mv -f .deps/gmapindex-indexdb.Tpo .deps/gmapindex-indexdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-write.o -MD -MP -MF .deps/atoiindex-bitpack64-write.Tpo -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c | |
| mv -f .deps/gmapindex-indexdb-write.Tpo .deps/gmapindex-indexdb-write.Po | |
| mv -f .deps/iit_dump-access.Tpo .deps/iit_dump-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-read.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-read.Tpo -c -o atoiindex-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-access.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-access.Tpo -c -o atoiindex-epu16-bitpack64-access.o `test -f 'epu16-bitpack64-access.c' || echo './'`epu16-bitpack64-access.c | |
| mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po | |
| mv -f .deps/iit_get-access.Tpo .deps/iit_get-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-incr.Tpo -c -o atoiindex-epu16-bitpack64-incr.o `test -f 'epu16-bitpack64-incr.c' || echo './'`epu16-bitpack64-incr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-write.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-write.Tpo -c -o atoiindex-epu16-bitpack64-write.o `test -f 'epu16-bitpack64-write.c' || echo './'`epu16-bitpack64-write.c | |
| mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-indexdb.o -MD -MP -MF .deps/atoiindex-indexdb.Tpo -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/iit_store-access.Tpo .deps/iit_store-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-indexdb-write.o -MD -MP -MF .deps/atoiindex-indexdb-write.Tpo -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c | |
| mv -f .deps/iit_store-iit-write.Tpo .deps/iit_store-iit-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-localdb.o -MD -MP -MF .deps/atoiindex-localdb.Tpo -c -o atoiindex-localdb.o `test -f 'localdb.c' || echo './'`localdb.c | |
| mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-atoi.o -MD -MP -MF .deps/atoiindex-atoi.Tpo -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c | |
| mv -f .deps/gmapindex-gmapindex.Tpo .deps/gmapindex-gmapindex.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-md5.o -MD -MP -MF .deps/atoiindex-md5.Tpo -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| mv -f .deps/gmapindex-bitpack64-incr.Tpo .deps/gmapindex-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bzip2.o -MD -MP -MF .deps/atoiindex-bzip2.Tpo -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-fopen.o -MD -MP -MF .deps/atoiindex-fopen.Tpo -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/iit_dump-getopt.Tpo .deps/iit_dump-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-sequence.o -MD -MP -MF .deps/atoiindex-sequence.Tpo -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| mv -f .deps/gmapindex-genome128_hr.Tpo .deps/gmapindex-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome.o -MD -MP -MF .deps/atoiindex-genome.Tpo -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| mv -f .deps/gsnap-cpuid.Tpo .deps/gsnap-cpuid.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-uintlist.o -MD -MP -MF .deps/atoiindex-uintlist.Tpo -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/iit_dump-getopt1.Tpo .deps/iit_dump-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-intlist.o -MD -MP -MF .deps/atoiindex-intlist.Tpo -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/snpindex-assert.Tpo .deps/snpindex-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-uint8list.o -MD -MP -MF .deps/atoiindex-uint8list.Tpo -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c | |
| mv -f .deps/iit_get-iit_get.Tpo .deps/iit_get-iit_get.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-list.o -MD -MP -MF .deps/atoiindex-list.Tpo -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-datadir.o -MD -MP -MF .deps/atoiindex-datadir.Tpo -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| mv -f .deps/iit_get-iit-read-univ.Tpo .deps/iit_get-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-parserange.o -MD -MP -MF .deps/atoiindex-parserange.Tpo -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getline.o -MD -MP -MF .deps/atoiindex-getline.Tpo -c -o atoiindex-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/iit_dump-iit-read-univ.Tpo .deps/iit_dump-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getopt.o -MD -MP -MF .deps/atoiindex-getopt.Tpo -c -o atoiindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/gsnapl-cpuid.Tpo .deps/gsnapl-cpuid.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getopt1.o -MD -MP -MF .deps/atoiindex-getopt1.Tpo -c -o atoiindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/gmapindex-genome.Tpo .deps/gmapindex-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-atoiindex.o -MD -MP -MF .deps/atoiindex-atoiindex.Tpo -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c | |
| mv -f .deps/iit_store-iit_store.Tpo .deps/iit_store-iit_store.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-except.o -MD -MP -MF .deps/trindex-except.Tpo -c -o trindex-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/get_genome-genome.Tpo .deps/get_genome-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-assert.o -MD -MP -MF .deps/trindex-assert.Tpo -c -o trindex-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/snpindex-littleendian.Tpo .deps/snpindex-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-mem.o -MD -MP -MF .deps/trindex-mem.Tpo -c -o trindex-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/snpindex-popcount.Tpo .deps/snpindex-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-littleendian.o -MD -MP -MF .deps/trindex-littleendian.Tpo -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/snpindex-bigendian.Tpo .deps/snpindex-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bigendian.o -MD -MP -MF .deps/trindex-bigendian.Tpo -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/snpindex-stopwatch.Tpo .deps/snpindex-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-genomicpos.o -MD -MP -MF .deps/trindex-genomicpos.Tpo -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/cmetindex-assert.Tpo .deps/cmetindex-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-stopwatch.o -MD -MP -MF .deps/trindex-stopwatch.Tpo -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/snpindex-getopt.Tpo .deps/snpindex-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-semaphore.o -MD -MP -MF .deps/trindex-semaphore.Tpo -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/cmetindex-popcount.Tpo .deps/cmetindex-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-access.o -MD -MP -MF .deps/trindex-access.Tpo -c -o trindex-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/snpindex-univinterval.Tpo .deps/snpindex-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-interval.o -MD -MP -MF .deps/trindex-interval.Tpo -c -o trindex-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/snpindex-getopt1.Tpo .deps/snpindex-getopt1.Po | |
| mv -f .deps/atoiindex-assert.Tpo .deps/atoiindex-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-filestring.o -MD -MP -MF .deps/trindex-filestring.Tpo -c -o trindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-iit-read.o -MD -MP -MF .deps/trindex-iit-read.Tpo -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/iit_dump-iit_dump.Tpo .deps/iit_dump-iit_dump.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bitpack64-access.o -MD -MP -MF .deps/trindex-bitpack64-access.Tpo -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/snpindex-interval.Tpo .deps/snpindex-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bitpack64-write.o -MD -MP -MF .deps/trindex-bitpack64-write.Tpo -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c | |
| mv -f .deps/cmetindex-littleendian.Tpo .deps/cmetindex-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-uintlist.o -MD -MP -MF .deps/trindex-uintlist.Tpo -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/snpindex-semaphore.Tpo .deps/snpindex-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-intlist.o -MD -MP -MF .deps/trindex-intlist.Tpo -c -o trindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/cmetindex-getopt.Tpo .deps/cmetindex-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-list.o -MD -MP -MF .deps/trindex-list.Tpo -c -o trindex-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/snpindex-list.Tpo .deps/snpindex-list.Po | |
| mv -f .deps/snpindex-except.Tpo .deps/snpindex-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-datadir.o -MD -MP -MF .deps/trindex-datadir.Tpo -c -o trindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getline.o -MD -MP -MF .deps/trindex-getline.Tpo -c -o trindex-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/snpindex-genomicpos.Tpo .deps/snpindex-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getopt.o -MD -MP -MF .deps/trindex-getopt.Tpo -c -o trindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/cmetindex-bigendian.Tpo .deps/cmetindex-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getopt1.o -MD -MP -MF .deps/trindex-getopt1.Tpo -c -o trindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/snpindex-uintlist.Tpo .deps/snpindex-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-trindex.o -MD -MP -MF .deps/trindex-trindex.Tpo -c -o trindex-trindex.o `test -f 'trindex.c' || echo './'`trindex.c | |
| mv -f .deps/snpindex-mem.Tpo .deps/snpindex-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-except.o -MD -MP -MF .deps/sam_sort-except.Tpo -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/gsnap-gsnap_select.Tpo .deps/gsnap-gsnap_select.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-assert.o -MD -MP -MF .deps/sam_sort-assert.Tpo -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/gsnapl-gsnapl_select.Tpo .deps/gsnapl-gsnapl_select.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-mem.o -MD -MP -MF .deps/sam_sort-mem.Tpo -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/iit_dump-parserange.Tpo .deps/iit_dump-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-littleendian.o -MD -MP -MF .deps/sam_sort-littleendian.Tpo -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/cmetindex-cmet.Tpo .deps/cmetindex-cmet.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-bigendian.o -MD -MP -MF .deps/sam_sort-bigendian.Tpo -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/cmetindex-getopt1.Tpo .deps/cmetindex-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-intlist.o -MD -MP -MF .deps/sam_sort-intlist.Tpo -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/atoiindex-littleendian.Tpo .deps/atoiindex-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-list.o -MD -MP -MF .deps/sam_sort-list.Tpo -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/snpindex-intlist.Tpo .deps/snpindex-intlist.Po | |
| mv -f .deps/cmetindex-stopwatch.Tpo .deps/cmetindex-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-stopwatch.o -MD -MP -MF .deps/sam_sort-stopwatch.Tpo -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-semaphore.o -MD -MP -MF .deps/sam_sort-semaphore.Tpo -c -o sam_sort-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/snpindex-bzip2.Tpo .deps/snpindex-bzip2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-access.o -MD -MP -MF .deps/sam_sort-access.Tpo -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/snpindex-compress.Tpo .deps/snpindex-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-univinterval.o -MD -MP -MF .deps/sam_sort-univinterval.Tpo -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/cmetindex-genomicpos.Tpo .deps/cmetindex-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-interval.o -MD -MP -MF .deps/sam_sort-interval.Tpo -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/snpindex-filestring.Tpo .deps/snpindex-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-uintlist.o -MD -MP -MF .deps/sam_sort-uintlist.Tpo -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/atoiindex-popcount.Tpo .deps/atoiindex-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-filestring.o -MD -MP -MF .deps/sam_sort-filestring.Tpo -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/atoiindex-bigendian.Tpo .deps/atoiindex-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-parserange.o -MD -MP -MF .deps/sam_sort-parserange.Tpo -c -o sam_sort-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/snpindex-fopen.Tpo .deps/snpindex-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-iit-read-univ.o -MD -MP -MF .deps/sam_sort-iit-read-univ.Tpo -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/cmetindex-semaphore.Tpo .deps/cmetindex-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-iit-read.o -MD -MP -MF .deps/sam_sort-iit-read.Tpo -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/snpindex-getline.Tpo .deps/snpindex-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-samheader.o -MD -MP -MF .deps/sam_sort-samheader.Tpo -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c | |
| mv -f .deps/cmetindex-univinterval.Tpo .deps/cmetindex-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-samread.o -MD -MP -MF .deps/sam_sort-samread.Tpo -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c | |
| mv -f .deps/cmetindex-epu16-bitpack64-read.Tpo .deps/cmetindex-epu16-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getline.o -MD -MP -MF .deps/sam_sort-getline.Tpo -c -o sam_sort-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/snpindex-bitpack64-readtwo.Tpo .deps/snpindex-bitpack64-readtwo.Po | |
| mv -f .deps/atoiindex-stopwatch.Tpo .deps/atoiindex-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-datadir.o -MD -MP -MF .deps/sam_sort-datadir.Tpo -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getopt.o -MD -MP -MF .deps/sam_sort-getopt.Tpo -c -o sam_sort-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/cmetindex-interval.Tpo .deps/cmetindex-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getopt1.o -MD -MP -MF .deps/sam_sort-getopt1.Tpo -c -o sam_sort-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/cmetindex-except.Tpo .deps/cmetindex-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-sam_sort.o -MD -MP -MF .deps/sam_sort-sam_sort.Tpo -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c | |
| mv -f .deps/snpindex-md5.Tpo .deps/snpindex-md5.Po | |
| mv -f .deps/cmetindex-bzip2.Tpo .deps/cmetindex-bzip2.Po | |
| mv -f .deps/snpindex-compress-write.Tpo .deps/snpindex-compress-write.Po | |
| mv -f .deps/cmetindex-fopen.Tpo .deps/cmetindex-fopen.Po | |
| mv -f .deps/snpindex-chrom.Tpo .deps/snpindex-chrom.Po | |
| mv -f .deps/atoiindex-genomicpos.Tpo .deps/atoiindex-genomicpos.Po | |
| mv -f .deps/cmetindex-epu16-bitpack64-access.Tpo .deps/cmetindex-epu16-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-except.o -MD -MP -MF .deps/gmap_avx512-except.Tpo -c -o gmap_avx512-except.o `test -f 'except.c' || echo './'`except.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-assert.o -MD -MP -MF .deps/gmap_avx512-assert.Tpo -c -o gmap_avx512-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-mem.o -MD -MP -MF .deps/gmap_avx512-mem.Tpo -c -o gmap_avx512-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-intlist.o -MD -MP -MF .deps/gmap_avx512-intlist.Tpo -c -o gmap_avx512-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-uintlist.o -MD -MP -MF .deps/gmap_avx512-uintlist.Tpo -c -o gmap_avx512-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-list.o -MD -MP -MF .deps/gmap_avx512-list.Tpo -c -o gmap_avx512-list.o `test -f 'list.c' || echo './'`list.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-littleendian.o -MD -MP -MF .deps/gmap_avx512-littleendian.Tpo -c -o gmap_avx512-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/cmetindex-mem.Tpo .deps/cmetindex-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bigendian.o -MD -MP -MF .deps/gmap_avx512-bigendian.Tpo -c -o gmap_avx512-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/snpindex-bitpack64-read.Tpo .deps/snpindex-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-univinterval.o -MD -MP -MF .deps/gmap_avx512-univinterval.Tpo -c -o gmap_avx512-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/cmetindex-getline.Tpo .deps/cmetindex-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-interval.o -MD -MP -MF .deps/gmap_avx512-interval.Tpo -c -o gmap_avx512-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/cmetindex-bitpack64-readtwo.Tpo .deps/cmetindex-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stopwatch.o -MD -MP -MF .deps/gmap_avx512-stopwatch.Tpo -c -o gmap_avx512-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/cmetindex-compress.Tpo .deps/cmetindex-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-semaphore.o -MD -MP -MF .deps/gmap_avx512-semaphore.Tpo -c -o gmap_avx512-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/atoiindex-semaphore.Tpo .deps/atoiindex-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-access.o -MD -MP -MF .deps/gmap_avx512-access.Tpo -c -o gmap_avx512-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/cmetindex-md5.Tpo .deps/cmetindex-md5.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-filestring.o -MD -MP -MF .deps/gmap_avx512-filestring.Tpo -c -o gmap_avx512-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/cmetindex-epu16-bitpack64-write.Tpo .deps/cmetindex-epu16-bitpack64-write.Po | |
| mv -f .deps/cmetindex-uint8list.Tpo .deps/cmetindex-uint8list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-iit-read-univ.o -MD -MP -MF .deps/gmap_avx512-iit-read-univ.Tpo -c -o gmap_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-iit-read.o -MD -MP -MF .deps/gmap_avx512-iit-read.Tpo -c -o gmap_avx512-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/cmetindex-filestring.Tpo .deps/cmetindex-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-md5.o -MD -MP -MF .deps/gmap_avx512-md5.Tpo -c -o gmap_avx512-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| mv -f .deps/cmetindex-list.Tpo .deps/cmetindex-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bzip2.o -MD -MP -MF .deps/gmap_avx512-bzip2.Tpo -c -o gmap_avx512-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/cmetindex-uintlist.Tpo .deps/cmetindex-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-fopen.o -MD -MP -MF .deps/gmap_avx512-fopen.Tpo -c -o gmap_avx512-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/snpindex-access.Tpo .deps/snpindex-access.Po | |
| mv -f .deps/atoiindex-except.Tpo .deps/atoiindex-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-sequence.o -MD -MP -MF .deps/gmap_avx512-sequence.Tpo -c -o gmap_avx512-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-reader.o -MD -MP -MF .deps/gmap_avx512-reader.Tpo -c -o gmap_avx512-reader.o `test -f 'reader.c' || echo './'`reader.c | |
| mv -f .deps/atoiindex-interval.Tpo .deps/atoiindex-interval.Po | |
| mv -f .deps/atoiindex-univinterval.Tpo .deps/atoiindex-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genomicpos.o -MD -MP -MF .deps/gmap_avx512-genomicpos.Tpo -c -o gmap_avx512-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-compress.o -MD -MP -MF .deps/gmap_avx512-compress.Tpo -c -o gmap_avx512-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/atoiindex-mem.Tpo .deps/atoiindex-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-compress-write.o -MD -MP -MF .deps/gmap_avx512-compress-write.Tpo -c -o gmap_avx512-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| mv -f .deps/cmetindex-compress-write.Tpo .deps/cmetindex-compress-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gbuffer.o -MD -MP -MF .deps/gmap_avx512-gbuffer.Tpo -c -o gmap_avx512-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c | |
| mv -f .deps/snpindex-parserange.Tpo .deps/snpindex-parserange.Po | |
| mv -f .deps/cmetindex-intlist.Tpo .deps/cmetindex-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome.o -MD -MP -MF .deps/gmap_avx512-genome.Tpo -c -o gmap_avx512-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-popcount.o -MD -MP -MF .deps/gmap_avx512-popcount.Tpo -c -o gmap_avx512-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/cmetindex-epu16-bitpack64-incr.Tpo .deps/cmetindex-epu16-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome128_hr.o -MD -MP -MF .deps/gmap_avx512-genome128_hr.Tpo -c -o gmap_avx512-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| mv -f .deps/get_genome-iit-read.Tpo .deps/get_genome-iit-read.Po | |
| mv -f .deps/cmetindex-bitpack64-read.Tpo .deps/cmetindex-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome_sites.o -MD -MP -MF .deps/gmap_avx512-genome_sites.Tpo -c -o gmap_avx512-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome-write.o -MD -MP -MF .deps/gmap_avx512-genome-write.Tpo -c -o gmap_avx512-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c | |
| mv -f .deps/snpindex-bitpack64-access.Tpo .deps/snpindex-bitpack64-access.Po | |
| mv -f .deps/snpindex-datadir.Tpo .deps/snpindex-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-bitpack64-read.Tpo -c -o gmap_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-bitpack64-readtwo.Tpo -c -o gmap_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/snpindex-genome128_consec.Tpo .deps/snpindex-genome128_consec.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-indexdb.o -MD -MP -MF .deps/gmap_avx512-indexdb.Tpo -c -o gmap_avx512-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/cmetindex-parserange.Tpo .deps/cmetindex-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-read.Tpo -c -o gmap_avx512-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| mv -f .deps/iit_get-iit-read.Tpo .deps/iit_get-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-readtwo.Tpo -c -o gmap_avx512-epu16-bitpack64-readtwo.o `test -f 'epu16-bitpack64-readtwo.c' || echo './'`epu16-bitpack64-readtwo.c | |
| mv -f .deps/atoiindex-atoi.Tpo .deps/atoiindex-atoi.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-oligo.o -MD -MP -MF .deps/gmap_avx512-oligo.Tpo -c -o gmap_avx512-oligo.o `test -f 'oligo.c' || echo './'`oligo.c | |
| mv -f .deps/atoiindex-compress.Tpo .deps/atoiindex-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-block.o -MD -MP -MF .deps/gmap_avx512-block.Tpo -c -o gmap_avx512-block.o `test -f 'block.c' || echo './'`block.c | |
| mv -f .deps/snpindex-bitpack64-write.Tpo .deps/snpindex-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chrom.o -MD -MP -MF .deps/gmap_avx512-chrom.Tpo -c -o gmap_avx512-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| mv -f .deps/cmetindex-access.Tpo .deps/cmetindex-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-segmentpos.o -MD -MP -MF .deps/gmap_avx512-segmentpos.Tpo -c -o gmap_avx512-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c | |
| mv -f .deps/cmetindex-datadir.Tpo .deps/cmetindex-datadir.Po | |
| mv -f .deps/snpindex-sequence.Tpo .deps/snpindex-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chrnum.o -MD -MP -MF .deps/gmap_avx512-chrnum.Tpo -c -o gmap_avx512-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-uinttable_rh.o -MD -MP -MF .deps/gmap_avx512-uinttable_rh.Tpo -c -o gmap_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c | |
| mv -f .deps/cmetindex-genome128_consec.Tpo .deps/cmetindex-genome128_consec.Po | |
| mv -f .deps/snpindex-indexdb.Tpo .deps/snpindex-indexdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gregion.o -MD -MP -MF .deps/gmap_avx512-gregion.Tpo -c -o gmap_avx512-gregion.o `test -f 'gregion.c' || echo './'`gregion.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-match.o -MD -MP -MF .deps/gmap_avx512-match.Tpo -c -o gmap_avx512-match.o `test -f 'match.c' || echo './'`match.c | |
| mv -f .deps/atoiindex-epu16-bitpack64-read.Tpo .deps/atoiindex-epu16-bitpack64-read.Po | |
| mv -f .deps/snpindex-indexdb-write.Tpo .deps/snpindex-indexdb-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-matchpool.o -MD -MP -MF .deps/gmap_avx512-matchpool.Tpo -c -o gmap_avx512-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diagnostic.o -MD -MP -MF .deps/gmap_avx512-diagnostic.Tpo -c -o gmap_avx512-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c | |
| mv -f .deps/atoiindex-filestring.Tpo .deps/atoiindex-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage1.o -MD -MP -MF .deps/gmap_avx512-stage1.Tpo -c -o gmap_avx512-stage1.o `test -f 'stage1.c' || echo './'`stage1.c | |
| mv -f .deps/cmetindex-bitpack64-write.Tpo .deps/cmetindex-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diag.o -MD -MP -MF .deps/gmap_avx512-diag.Tpo -c -o gmap_avx512-diag.o `test -f 'diag.c' || echo './'`diag.c | |
| mv -f .deps/gmapindex-iit-read.Tpo .deps/gmapindex-iit-read.Po | |
| mv -f .deps/cmetindex-localdb.Tpo .deps/cmetindex-localdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diagpool.o -MD -MP -MF .deps/gmap_avx512-diagpool.Tpo -c -o gmap_avx512-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-cmet.o -MD -MP -MF .deps/gmap_avx512-cmet.Tpo -c -o gmap_avx512-cmet.o `test -f 'cmet.c' || echo './'`cmet.c | |
| mv -f .deps/atoiindex-bitpack64-readtwo.Tpo .deps/atoiindex-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-atoi.o -MD -MP -MF .deps/gmap_avx512-atoi.Tpo -c -o gmap_avx512-atoi.o `test -f 'atoi.c' || echo './'`atoi.c | |
| mv -f .deps/atoiindex-compress-write.Tpo .deps/atoiindex-compress-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-orderstat.o -MD -MP -MF .deps/gmap_avx512-orderstat.Tpo -c -o gmap_avx512-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c | |
| mv -f .deps/atoiindex-epu16-bitpack64-access.Tpo .deps/atoiindex-epu16-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-oligoindex_hr.o -MD -MP -MF .deps/gmap_avx512-oligoindex_hr.Tpo -c -o gmap_avx512-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c | |
| mv -f .deps/cmetindex-bitpack64-access.Tpo .deps/cmetindex-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-transcript.o -MD -MP -MF .deps/gmap_avx512-transcript.Tpo -c -o gmap_avx512-transcript.o `test -f 'transcript.c' || echo './'`transcript.c | |
| mv -f .deps/cmetindex-indexdb-write.Tpo .deps/cmetindex-indexdb-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-intron.o -MD -MP -MF .deps/gmap_avx512-intron.Tpo -c -o gmap_avx512-intron.o `test -f 'intron.c' || echo './'`intron.c | |
| mv -f .deps/cmetindex-indexdb.Tpo .deps/cmetindex-indexdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-maxent.o -MD -MP -MF .deps/gmap_avx512-maxent.Tpo -c -o gmap_avx512-maxent.o `test -f 'maxent.c' || echo './'`maxent.c | |
| mv -f .deps/cmetindex-sequence.Tpo .deps/cmetindex-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-maxent_hr.o -MD -MP -MF .deps/gmap_avx512-maxent_hr.Tpo -c -o gmap_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c | |
| mv -f .deps/atoiindex-bitpack64-read.Tpo .deps/atoiindex-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pair.o -MD -MP -MF .deps/gmap_avx512-pair.Tpo -c -o gmap_avx512-pair.o `test -f 'pair.c' || echo './'`pair.c | |
| mv -f .deps/atoiindex-epu16-bitpack64-write.Tpo .deps/atoiindex-epu16-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pairpool.o -MD -MP -MF .deps/gmap_avx512-pairpool.Tpo -c -o gmap_avx512-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c | |
| mv -f .deps/snpindex-iit-read-univ.Tpo .deps/snpindex-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-cellpool.o -MD -MP -MF .deps/gmap_avx512-cellpool.Tpo -c -o gmap_avx512-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c | |
| mv -f .deps/atoiindex-access.Tpo .deps/atoiindex-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage2.o -MD -MP -MF .deps/gmap_avx512-stage2.Tpo -c -o gmap_avx512-stage2.o `test -f 'stage2.c' || echo './'`stage2.c | |
| mv -f .deps/atoiindex-epu16-bitpack64-incr.Tpo .deps/atoiindex-epu16-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-doublelist.o -MD -MP -MF .deps/gmap_avx512-doublelist.Tpo -c -o gmap_avx512-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c | |
| mv -f .deps/atoiindex-md5.Tpo .deps/atoiindex-md5.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-smooth.o -MD -MP -MF .deps/gmap_avx512-smooth.Tpo -c -o gmap_avx512-smooth.o `test -f 'smooth.c' || echo './'`smooth.c | |
| mv -f .deps/trindex-assert.Tpo .deps/trindex-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicestringpool.o -MD -MP -MF .deps/gmap_avx512-splicestringpool.Tpo -c -o gmap_avx512-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c | |
| mv -f .deps/atoiindex-getopt.Tpo .deps/atoiindex-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicetrie_build.o -MD -MP -MF .deps/gmap_avx512-splicetrie_build.Tpo -c -o gmap_avx512-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c | |
| mv -f .deps/snpindex-snpindex.Tpo .deps/snpindex-snpindex.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicetrie.o -MD -MP -MF .deps/gmap_avx512-splicetrie.Tpo -c -o gmap_avx512-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c | |
| mv -f .deps/cmetindex-iit-read-univ.Tpo .deps/cmetindex-iit-read-univ.Po | |
| mv -f .deps/atoiindex-bitpack64-access.Tpo .deps/atoiindex-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-boyer-moore.o -MD -MP -MF .deps/gmap_avx512-boyer-moore.Tpo -c -o gmap_avx512-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog.o -MD -MP -MF .deps/gmap_avx512-dynprog.Tpo -c -o gmap_avx512-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c | |
| mv -f .deps/atoiindex-genome128_consec.Tpo .deps/atoiindex-genome128_consec.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_simd.o -MD -MP -MF .deps/gmap_avx512-dynprog_simd.Tpo -c -o gmap_avx512-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c | |
| mv -f .deps/atoiindex-getopt1.Tpo .deps/atoiindex-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_single.o -MD -MP -MF .deps/gmap_avx512-dynprog_single.Tpo -c -o gmap_avx512-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c | |
| mv -f .deps/atoiindex-bzip2.Tpo .deps/atoiindex-bzip2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_genome.o -MD -MP -MF .deps/gmap_avx512-dynprog_genome.Tpo -c -o gmap_avx512-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c | |
| mv -f .deps/snpindex-genome128_hr.Tpo .deps/snpindex-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_cdna.o -MD -MP -MF .deps/gmap_avx512-dynprog_cdna.Tpo -c -o gmap_avx512-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c | |
| mv -f .deps/atoiindex-bitpack64-write.Tpo .deps/atoiindex-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_end.o -MD -MP -MF .deps/gmap_avx512-dynprog_end.Tpo -c -o gmap_avx512-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c | |
| mv -f .deps/cmetindex-cmetindex.Tpo .deps/cmetindex-cmetindex.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-translation.o -MD -MP -MF .deps/gmap_avx512-translation.Tpo -c -o gmap_avx512-translation.o `test -f 'translation.c' || echo './'`translation.c | |
| mv -f .deps/atoiindex-fopen.Tpo .deps/atoiindex-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pbinom.o -MD -MP -MF .deps/gmap_avx512-pbinom.Tpo -c -o gmap_avx512-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c | |
| mv -f .deps/atoiindex-indexdb-write.Tpo .deps/atoiindex-indexdb-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-changepoint.o -MD -MP -MF .deps/gmap_avx512-changepoint.Tpo -c -o gmap_avx512-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c | |
| mv -f .deps/atoiindex-localdb.Tpo .deps/atoiindex-localdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage3.o -MD -MP -MF .deps/gmap_avx512-stage3.Tpo -c -o gmap_avx512-stage3.o `test -f 'stage3.c' || echo './'`stage3.c | |
| mv -f .deps/snpindex-bitpack64-incr.Tpo .deps/snpindex-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-request.o -MD -MP -MF .deps/gmap_avx512-request.Tpo -c -o gmap_avx512-request.o `test -f 'request.c' || echo './'`request.c | |
| mv -f .deps/trindex-littleendian.Tpo .deps/trindex-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-result.o -MD -MP -MF .deps/gmap_avx512-result.Tpo -c -o gmap_avx512-result.o `test -f 'result.c' || echo './'`result.c | |
| mv -f .deps/cmetindex-genome128_hr.Tpo .deps/cmetindex-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-output.o -MD -MP -MF .deps/gmap_avx512-output.Tpo -c -o gmap_avx512-output.o `test -f 'output.c' || echo './'`output.c | |
| mv -f .deps/atoiindex-indexdb.Tpo .deps/atoiindex-indexdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-inbuffer.o -MD -MP -MF .deps/gmap_avx512-inbuffer.Tpo -c -o gmap_avx512-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c | |
| mv -f .deps/cmetindex-bitpack64-incr.Tpo .deps/cmetindex-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-samheader.o -MD -MP -MF .deps/gmap_avx512-samheader.Tpo -c -o gmap_avx512-samheader.o `test -f 'samheader.c' || echo './'`samheader.c | |
| mv -f .deps/trindex-bigendian.Tpo .deps/trindex-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-outbuffer.o -MD -MP -MF .deps/gmap_avx512-outbuffer.Tpo -c -o gmap_avx512-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c | |
| mv -f .deps/atoiindex-uintlist.Tpo .deps/atoiindex-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chimera.o -MD -MP -MF .deps/gmap_avx512-chimera.Tpo -c -o gmap_avx512-chimera.o `test -f 'chimera.c' || echo './'`chimera.c | |
| mv -f .deps/atoiindex-iit-read-univ.Tpo .deps/atoiindex-iit-read-univ.Po | |
| mv -f .deps/atoiindex-uint8list.Tpo .deps/atoiindex-uint8list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-datadir.o -MD -MP -MF .deps/gmap_avx512-datadir.Tpo -c -o gmap_avx512-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-parserange.o -MD -MP -MF .deps/gmap_avx512-parserange.Tpo -c -o gmap_avx512-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/snpindex-genome.Tpo .deps/snpindex-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getline.o -MD -MP -MF .deps/gmap_avx512-getline.Tpo -c -o gmap_avx512-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/atoiindex-getline.Tpo .deps/atoiindex-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getopt.o -MD -MP -MF .deps/gmap_avx512-getopt.Tpo -c -o gmap_avx512-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/sam_sort-assert.Tpo .deps/sam_sort-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getopt1.o -MD -MP -MF .deps/gmap_avx512-getopt1.Tpo -c -o gmap_avx512-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/atoiindex-list.Tpo .deps/atoiindex-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gmap.o -MD -MP -MF .deps/gmap_avx512-gmap.Tpo -c -o gmap_avx512-gmap.o `test -f 'gmap.c' || echo './'`gmap.c | |
| mv -f .deps/atoiindex-intlist.Tpo .deps/atoiindex-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-except.o -MD -MP -MF .deps/gmapl_avx512-except.Tpo -c -o gmapl_avx512-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/trindex-getopt.Tpo .deps/trindex-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-assert.o -MD -MP -MF .deps/gmapl_avx512-assert.Tpo -c -o gmapl_avx512-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/trindex-except.Tpo .deps/trindex-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-mem.o -MD -MP -MF .deps/gmapl_avx512-mem.Tpo -c -o gmapl_avx512-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/trindex-stopwatch.Tpo .deps/trindex-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-intlist.o -MD -MP -MF .deps/gmapl_avx512-intlist.Tpo -c -o gmapl_avx512-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/trindex-genomicpos.Tpo .deps/trindex-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-uintlist.o -MD -MP -MF .deps/gmapl_avx512-uintlist.Tpo -c -o gmapl_avx512-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/cmetindex-genome.Tpo .deps/cmetindex-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-uint8list.o -MD -MP -MF .deps/gmapl_avx512-uint8list.Tpo -c -o gmapl_avx512-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c | |
| mv -f .deps/trindex-getopt1.Tpo .deps/trindex-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-list.o -MD -MP -MF .deps/gmapl_avx512-list.Tpo -c -o gmapl_avx512-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/trindex-mem.Tpo .deps/trindex-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-littleendian.o -MD -MP -MF .deps/gmapl_avx512-littleendian.Tpo -c -o gmapl_avx512-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/sam_sort-littleendian.Tpo .deps/sam_sort-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bigendian.o -MD -MP -MF .deps/gmapl_avx512-bigendian.Tpo -c -o gmapl_avx512-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/iit_dump-iit-read.Tpo .deps/iit_dump-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-univinterval.o -MD -MP -MF .deps/gmapl_avx512-univinterval.Tpo -c -o gmapl_avx512-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/atoiindex-bitpack64-incr.Tpo .deps/atoiindex-bitpack64-incr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-interval.o -MD -MP -MF .deps/gmapl_avx512-interval.Tpo -c -o gmapl_avx512-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/trindex-semaphore.Tpo .deps/trindex-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-stopwatch.o -MD -MP -MF .deps/gmapl_avx512-stopwatch.Tpo -c -o gmapl_avx512-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/atoiindex-parserange.Tpo .deps/atoiindex-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-semaphore.o -MD -MP -MF .deps/gmapl_avx512-semaphore.Tpo -c -o gmapl_avx512-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/atoiindex-genome128_hr.Tpo .deps/atoiindex-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-access.o -MD -MP -MF .deps/gmapl_avx512-access.Tpo -c -o gmapl_avx512-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/atoiindex-sequence.Tpo .deps/atoiindex-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-filestring.o -MD -MP -MF .deps/gmapl_avx512-filestring.Tpo -c -o gmapl_avx512-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/sam_sort-bigendian.Tpo .deps/sam_sort-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-iit-read-univ.o -MD -MP -MF .deps/gmapl_avx512-iit-read-univ.Tpo -c -o gmapl_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/gmap_avx512-assert.Tpo .deps/gmap_avx512-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-iit-read.o -MD -MP -MF .deps/gmapl_avx512-iit-read.Tpo -c -o gmapl_avx512-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/trindex-interval.Tpo .deps/trindex-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-md5.o -MD -MP -MF .deps/gmapl_avx512-md5.Tpo -c -o gmapl_avx512-md5.o `test -f 'md5.c' || echo './'`md5.c | |
| mv -f .deps/sam_sort-getopt.Tpo .deps/sam_sort-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bzip2.o -MD -MP -MF .deps/gmapl_avx512-bzip2.Tpo -c -o gmapl_avx512-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/atoiindex-datadir.Tpo .deps/atoiindex-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-fopen.o -MD -MP -MF .deps/gmapl_avx512-fopen.Tpo -c -o gmapl_avx512-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/sam_sort-stopwatch.Tpo .deps/sam_sort-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-sequence.o -MD -MP -MF .deps/gmapl_avx512-sequence.Tpo -c -o gmapl_avx512-sequence.o `test -f 'sequence.c' || echo './'`sequence.c | |
| mv -f .deps/sam_sort-getopt1.Tpo .deps/sam_sort-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-reader.o -MD -MP -MF .deps/gmapl_avx512-reader.Tpo -c -o gmapl_avx512-reader.o `test -f 'reader.c' || echo './'`reader.c | |
| mv -f .deps/gmap_avx512-popcount.Tpo .deps/gmap_avx512-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genomicpos.o -MD -MP -MF .deps/gmapl_avx512-genomicpos.Tpo -c -o gmapl_avx512-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/trindex-uintlist.Tpo .deps/trindex-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-compress.o -MD -MP -MF .deps/gmapl_avx512-compress.Tpo -c -o gmapl_avx512-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/trindex-getline.Tpo .deps/trindex-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-compress-write.o -MD -MP -MF .deps/gmapl_avx512-compress-write.Tpo -c -o gmapl_avx512-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c | |
| mv -f .deps/trindex-filestring.Tpo .deps/trindex-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-gbuffer.o -MD -MP -MF .deps/gmapl_avx512-gbuffer.Tpo -c -o gmapl_avx512-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c | |
| mv -f .deps/gmap_avx512-littleendian.Tpo .deps/gmap_avx512-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genome.o -MD -MP -MF .deps/gmapl_avx512-genome.Tpo -c -o gmapl_avx512-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| mv -f .deps/trindex-list.Tpo .deps/trindex-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-popcount.o -MD -MP -MF .deps/gmapl_avx512-popcount.Tpo -c -o gmapl_avx512-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/sam_sort-semaphore.Tpo .deps/sam_sort-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genome128_hr.o -MD -MP -MF .deps/gmapl_avx512-genome128_hr.Tpo -c -o gmapl_avx512-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| mv -f .deps/trindex-intlist.Tpo .deps/trindex-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genome_sites.o -MD -MP -MF .deps/gmapl_avx512-genome_sites.Tpo -c -o gmapl_avx512-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c | |
| mv -f .deps/sam_sort-mem.Tpo .deps/sam_sort-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genome-write.o -MD -MP -MF .deps/gmapl_avx512-genome-write.Tpo -c -o gmapl_avx512-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c | |
| mv -f .deps/sam_sort-except.Tpo .deps/sam_sort-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bitpack64-read.o -MD -MP -MF .deps/gmapl_avx512-bitpack64-read.Tpo -c -o gmapl_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| mv -f .deps/gmap_avx512-bigendian.Tpo .deps/gmap_avx512-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gmapl_avx512-bitpack64-readtwo.Tpo -c -o gmapl_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/sam_sort-univinterval.Tpo .deps/sam_sort-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-indexdb.o -MD -MP -MF .deps/gmapl_avx512-indexdb.Tpo -c -o gmapl_avx512-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/sam_sort-list.Tpo .deps/sam_sort-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gmapl_avx512-epu16-bitpack64-read.Tpo -c -o gmapl_avx512-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| mv -f .deps/snpindex-iit-read.Tpo .deps/snpindex-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gmapl_avx512-epu16-bitpack64-readtwo.Tpo -c -o gmapl_avx512-epu16-bitpack64-readtwo.o `test -f 'epu16-bitpack64-readtwo.c' || echo './'`epu16-bitpack64-readtwo.c | |
| mv -f .deps/sam_sort-interval.Tpo .deps/sam_sort-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-oligo.o -MD -MP -MF .deps/gmapl_avx512-oligo.Tpo -c -o gmapl_avx512-oligo.o `test -f 'oligo.c' || echo './'`oligo.c | |
| mv -f .deps/sam_sort-uintlist.Tpo .deps/sam_sort-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-block.o -MD -MP -MF .deps/gmapl_avx512-block.Tpo -c -o gmapl_avx512-block.o `test -f 'block.c' || echo './'`block.c | |
| mv -f .deps/sam_sort-intlist.Tpo .deps/sam_sort-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-chrom.o -MD -MP -MF .deps/gmapl_avx512-chrom.Tpo -c -o gmapl_avx512-chrom.o `test -f 'chrom.c' || echo './'`chrom.c | |
| mv -f .deps/sam_sort-samheader.Tpo .deps/sam_sort-samheader.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-segmentpos.o -MD -MP -MF .deps/gmapl_avx512-segmentpos.Tpo -c -o gmapl_avx512-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c | |
| mv -f .deps/sam_sort-getline.Tpo .deps/sam_sort-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-chrnum.o -MD -MP -MF .deps/gmapl_avx512-chrnum.Tpo -c -o gmapl_avx512-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c | |
| mv -f .deps/cmetindex-iit-read.Tpo .deps/cmetindex-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-uinttable_rh.o -MD -MP -MF .deps/gmapl_avx512-uinttable_rh.Tpo -c -o gmapl_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c | |
| mv -f .deps/trindex-bitpack64-access.Tpo .deps/trindex-bitpack64-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-gregion.o -MD -MP -MF .deps/gmapl_avx512-gregion.Tpo -c -o gmapl_avx512-gregion.o `test -f 'gregion.c' || echo './'`gregion.c | |
| mv -f .deps/gmap_avx512-semaphore.Tpo .deps/gmap_avx512-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-match.o -MD -MP -MF .deps/gmapl_avx512-match.Tpo -c -o gmapl_avx512-match.o `test -f 'match.c' || echo './'`match.c | |
| mv -f .deps/trindex-access.Tpo .deps/trindex-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-matchpool.o -MD -MP -MF .deps/gmapl_avx512-matchpool.Tpo -c -o gmapl_avx512-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c | |
| mv -f .deps/gmap_avx512-stopwatch.Tpo .deps/gmap_avx512-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-diagnostic.o -MD -MP -MF .deps/gmapl_avx512-diagnostic.Tpo -c -o gmapl_avx512-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c | |
| mv -f .deps/sam_sort-filestring.Tpo .deps/sam_sort-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-stage1.o -MD -MP -MF .deps/gmapl_avx512-stage1.Tpo -c -o gmapl_avx512-stage1.o `test -f 'stage1.c' || echo './'`stage1.c | |
| mv -f .deps/trindex-bitpack64-write.Tpo .deps/trindex-bitpack64-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-diag.o -MD -MP -MF .deps/gmapl_avx512-diag.Tpo -c -o gmapl_avx512-diag.o `test -f 'diag.c' || echo './'`diag.c | |
| mv -f .deps/atoiindex-atoiindex.Tpo .deps/atoiindex-atoiindex.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-diagpool.o -MD -MP -MF .deps/gmapl_avx512-diagpool.Tpo -c -o gmapl_avx512-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c | |
| mv -f .deps/gmap_avx512-univinterval.Tpo .deps/gmap_avx512-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-cmet.o -MD -MP -MF .deps/gmapl_avx512-cmet.Tpo -c -o gmapl_avx512-cmet.o `test -f 'cmet.c' || echo './'`cmet.c | |
| mv -f .deps/gmap_avx512-interval.Tpo .deps/gmap_avx512-interval.Po | |
| mv -f .deps/gmap_avx512-gbuffer.Tpo .deps/gmap_avx512-gbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-atoi.o -MD -MP -MF .deps/gmapl_avx512-atoi.Tpo -c -o gmapl_avx512-atoi.o `test -f 'atoi.c' || echo './'`atoi.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-orderstat.o -MD -MP -MF .deps/gmapl_avx512-orderstat.Tpo -c -o gmapl_avx512-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c | |
| mv -f .deps/gmap_avx512-except.Tpo .deps/gmap_avx512-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-oligoindex_hr.o -MD -MP -MF .deps/gmapl_avx512-oligoindex_hr.Tpo -c -o gmapl_avx512-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c | |
| mv -f .deps/gmap_avx512-genomicpos.Tpo .deps/gmap_avx512-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-transcript.o -MD -MP -MF .deps/gmapl_avx512-transcript.Tpo -c -o gmapl_avx512-transcript.o `test -f 'transcript.c' || echo './'`transcript.c | |
| mv -f .deps/gmap_avx512-cmet.Tpo .deps/gmap_avx512-cmet.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-intron.o -MD -MP -MF .deps/gmapl_avx512-intron.Tpo -c -o gmapl_avx512-intron.o `test -f 'intron.c' || echo './'`intron.c | |
| mv -f .deps/trindex-datadir.Tpo .deps/trindex-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-maxent.o -MD -MP -MF .deps/gmapl_avx512-maxent.Tpo -c -o gmapl_avx512-maxent.o `test -f 'maxent.c' || echo './'`maxent.c | |
| mv -f .deps/gmap_avx512-reader.Tpo .deps/gmap_avx512-reader.Po | |
| mv -f .deps/gmap_avx512-bzip2.Tpo .deps/gmap_avx512-bzip2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-maxent_hr.o -MD -MP -MF .deps/gmapl_avx512-maxent_hr.Tpo -c -o gmapl_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-pair.o -MD -MP -MF .deps/gmapl_avx512-pair.Tpo -c -o gmapl_avx512-pair.o `test -f 'pair.c' || echo './'`pair.c | |
| mv -f .deps/gmap_avx512-fopen.Tpo .deps/gmap_avx512-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-pairpool.o -MD -MP -MF .deps/gmapl_avx512-pairpool.Tpo -c -o gmapl_avx512-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c | |
| mv -f .deps/gmap_avx512-uintlist.Tpo .deps/gmap_avx512-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-cellpool.o -MD -MP -MF .deps/gmapl_avx512-cellpool.Tpo -c -o gmapl_avx512-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c | |
| mv -f .deps/gmap_avx512-list.Tpo .deps/gmap_avx512-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-stage2.o -MD -MP -MF .deps/gmapl_avx512-stage2.Tpo -c -o gmapl_avx512-stage2.o `test -f 'stage2.c' || echo './'`stage2.c | |
| mv -f .deps/gmap_avx512-atoi.Tpo .deps/gmap_avx512-atoi.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-doublelist.o -MD -MP -MF .deps/gmapl_avx512-doublelist.Tpo -c -o gmapl_avx512-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c | |
| mv -f .deps/sam_sort-parserange.Tpo .deps/sam_sort-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-smooth.o -MD -MP -MF .deps/gmapl_avx512-smooth.Tpo -c -o gmapl_avx512-smooth.o `test -f 'smooth.c' || echo './'`smooth.c | |
| mv -f .deps/gmap_avx512-mem.Tpo .deps/gmap_avx512-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-splicestringpool.o -MD -MP -MF .deps/gmapl_avx512-splicestringpool.Tpo -c -o gmapl_avx512-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c | |
| mv -f .deps/gmap_avx512-intlist.Tpo .deps/gmap_avx512-intlist.Po | |
| mv -f .deps/trindex-trindex.Tpo .deps/trindex-trindex.Po | |
| mv -f .deps/gmap_avx512-md5.Tpo .deps/gmap_avx512-md5.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-splicetrie_build.o -MD -MP -MF .deps/gmapl_avx512-splicetrie_build.Tpo -c -o gmapl_avx512-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-splicetrie.o -MD -MP -MF .deps/gmapl_avx512-splicetrie.Tpo -c -o gmapl_avx512-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-boyer-moore.o -MD -MP -MF .deps/gmapl_avx512-boyer-moore.Tpo -c -o gmapl_avx512-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c | |
| mv -f .deps/atoiindex-genome.Tpo .deps/atoiindex-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog.o -MD -MP -MF .deps/gmapl_avx512-dynprog.Tpo -c -o gmapl_avx512-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c | |
| mv -f .deps/sam_sort-samread.Tpo .deps/sam_sort-samread.Po | |
| mv -f .deps/gmap_avx512-filestring.Tpo .deps/gmap_avx512-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog_simd.o -MD -MP -MF .deps/gmapl_avx512-dynprog_simd.Tpo -c -o gmapl_avx512-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog_single.o -MD -MP -MF .deps/gmapl_avx512-dynprog_single.Tpo -c -o gmapl_avx512-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c | |
| mv -f .deps/sam_sort-access.Tpo .deps/sam_sort-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog_genome.o -MD -MP -MF .deps/gmapl_avx512-dynprog_genome.Tpo -c -o gmapl_avx512-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c | |
| mv -f .deps/sam_sort-datadir.Tpo .deps/sam_sort-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog_cdna.o -MD -MP -MF .deps/gmapl_avx512-dynprog_cdna.Tpo -c -o gmapl_avx512-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c | |
| mv -f .deps/gmap_avx512-diagnostic.Tpo .deps/gmap_avx512-diagnostic.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-dynprog_end.o -MD -MP -MF .deps/gmapl_avx512-dynprog_end.Tpo -c -o gmapl_avx512-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c | |
| mv -f .deps/atoiindex-iit-read.Tpo .deps/atoiindex-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-translation.o -MD -MP -MF .deps/gmapl_avx512-translation.Tpo -c -o gmapl_avx512-translation.o `test -f 'translation.c' || echo './'`translation.c | |
| mv -f .deps/gmap_avx512-compress-write.Tpo .deps/gmap_avx512-compress-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-pbinom.o -MD -MP -MF .deps/gmapl_avx512-pbinom.Tpo -c -o gmapl_avx512-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c | |
| mv -f .deps/gmap_avx512-orderstat.Tpo .deps/gmap_avx512-orderstat.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-changepoint.o -MD -MP -MF .deps/gmapl_avx512-changepoint.Tpo -c -o gmapl_avx512-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c | |
| mv -f .deps/gmap_avx512-epu16-bitpack64-read.Tpo .deps/gmap_avx512-epu16-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-stage3.o -MD -MP -MF .deps/gmapl_avx512-stage3.Tpo -c -o gmapl_avx512-stage3.o `test -f 'stage3.c' || echo './'`stage3.c | |
| mv -f .deps/gmap_avx512-compress.Tpo .deps/gmap_avx512-compress.Po | |
| mv -f .deps/gmap_avx512-epu16-bitpack64-readtwo.Tpo .deps/gmap_avx512-epu16-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-request.o -MD -MP -MF .deps/gmapl_avx512-request.Tpo -c -o gmapl_avx512-request.o `test -f 'request.c' || echo './'`request.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-result.o -MD -MP -MF .deps/gmapl_avx512-result.Tpo -c -o gmapl_avx512-result.o `test -f 'result.c' || echo './'`result.c | |
| mv -f .deps/gmap_avx512-diagpool.Tpo .deps/gmap_avx512-diagpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-output.o -MD -MP -MF .deps/gmapl_avx512-output.Tpo -c -o gmapl_avx512-output.o `test -f 'output.c' || echo './'`output.c | |
| mv -f .deps/gmap_avx512-chrom.Tpo .deps/gmap_avx512-chrom.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-inbuffer.o -MD -MP -MF .deps/gmapl_avx512-inbuffer.Tpo -c -o gmapl_avx512-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c | |
| mv -f .deps/gmap_avx512-block.Tpo .deps/gmap_avx512-block.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-samheader.o -MD -MP -MF .deps/gmapl_avx512-samheader.Tpo -c -o gmapl_avx512-samheader.o `test -f 'samheader.c' || echo './'`samheader.c | |
| mv -f .deps/gmap_avx512-access.Tpo .deps/gmap_avx512-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-outbuffer.o -MD -MP -MF .deps/gmapl_avx512-outbuffer.Tpo -c -o gmapl_avx512-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c | |
| mv -f .deps/gmap_avx512-uinttable_rh.Tpo .deps/gmap_avx512-uinttable_rh.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-chimera.o -MD -MP -MF .deps/gmapl_avx512-chimera.Tpo -c -o gmapl_avx512-chimera.o `test -f 'chimera.c' || echo './'`chimera.c | |
| mv -f .deps/gmap_avx512-oligo.Tpo .deps/gmap_avx512-oligo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-datadir.o -MD -MP -MF .deps/gmapl_avx512-datadir.Tpo -c -o gmapl_avx512-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| mv -f .deps/sam_sort-sam_sort.Tpo .deps/sam_sort-sam_sort.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-parserange.o -MD -MP -MF .deps/gmapl_avx512-parserange.Tpo -c -o gmapl_avx512-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/gmap_avx512-cellpool.Tpo .deps/gmap_avx512-cellpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-getline.o -MD -MP -MF .deps/gmapl_avx512-getline.Tpo -c -o gmapl_avx512-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/gmap_avx512-diag.Tpo .deps/gmap_avx512-diag.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-getopt.o -MD -MP -MF .deps/gmapl_avx512-getopt.Tpo -c -o gmapl_avx512-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/gmap_avx512-chrnum.Tpo .deps/gmap_avx512-chrnum.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-getopt1.o -MD -MP -MF .deps/gmapl_avx512-getopt1.Tpo -c -o gmapl_avx512-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/gmap_avx512-intron.Tpo .deps/gmap_avx512-intron.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-gmap.o -MD -MP -MF .deps/gmapl_avx512-gmap.Tpo -c -o gmapl_avx512-gmap.o `test -f 'gmap.c' || echo './'`gmap.c | |
| mv -f .deps/gmap_avx512-segmentpos.Tpo .deps/gmap_avx512-segmentpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-except.o -MD -MP -MF .deps/gsnap_avx512-except.Tpo -c -o gsnap_avx512-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/gmap_avx512-sequence.Tpo .deps/gmap_avx512-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-assert.o -MD -MP -MF .deps/gsnap_avx512-assert.Tpo -c -o gsnap_avx512-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/gmap_avx512-doublelist.Tpo .deps/gmap_avx512-doublelist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-mem.o -MD -MP -MF .deps/gsnap_avx512-mem.Tpo -c -o gsnap_avx512-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/gmap_avx512-matchpool.Tpo .deps/gmap_avx512-matchpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-intlist.o -MD -MP -MF .deps/gsnap_avx512-intlist.Tpo -c -o gsnap_avx512-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/gmap_avx512-match.Tpo .deps/gmap_avx512-match.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-uintlist.o -MD -MP -MF .deps/gsnap_avx512-uintlist.Tpo -c -o gsnap_avx512-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| mv -f .deps/gmapl_avx512-assert.Tpo .deps/gmapl_avx512-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-list.o -MD -MP -MF .deps/gsnap_avx512-list.Tpo -c -o gsnap_avx512-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/gmap_avx512-getopt.Tpo .deps/gmap_avx512-getopt.Po | |
| mv -f .deps/gmap_avx512-splicestringpool.Tpo .deps/gmap_avx512-splicestringpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-littleendian.o -MD -MP -MF .deps/gsnap_avx512-littleendian.Tpo -c -o gsnap_avx512-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-bigendian.o -MD -MP -MF .deps/gsnap_avx512-bigendian.Tpo -c -o gsnap_avx512-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/gmap_avx512-genome-write.Tpo .deps/gmap_avx512-genome-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-univinterval.o -MD -MP -MF .deps/gsnap_avx512-univinterval.Tpo -c -o gsnap_avx512-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/sam_sort-iit-read-univ.Tpo .deps/sam_sort-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-interval.o -MD -MP -MF .deps/gsnap_avx512-interval.Tpo -c -o gsnap_avx512-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/gmap_avx512-getopt1.Tpo .deps/gmap_avx512-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-stopwatch.o -MD -MP -MF .deps/gsnap_avx512-stopwatch.Tpo -c -o gsnap_avx512-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| mv -f .deps/gmap_avx512-gregion.Tpo .deps/gmap_avx512-gregion.Po | |
| mv -f .deps/gmap_avx512-transcript.Tpo .deps/gmap_avx512-transcript.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-semaphore.o -MD -MP -MF .deps/gsnap_avx512-semaphore.Tpo -c -o gsnap_avx512-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-access.o -MD -MP -MF .deps/gsnap_avx512-access.Tpo -c -o gsnap_avx512-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/gmap_avx512-bitpack64-read.Tpo .deps/gmap_avx512-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-filestring.o -MD -MP -MF .deps/gsnap_avx512-filestring.Tpo -c -o gsnap_avx512-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/gmap_avx512-changepoint.Tpo .deps/gmap_avx512-changepoint.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-iit-read-univ.o -MD -MP -MF .deps/gsnap_avx512-iit-read-univ.Tpo -c -o gsnap_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/gmap_avx512-iit-read-univ.Tpo .deps/gmap_avx512-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-iit-read.o -MD -MP -MF .deps/gsnap_avx512-iit-read.Tpo -c -o gsnap_avx512-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/gmapl_avx512-littleendian.Tpo .deps/gmapl_avx512-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-bzip2.o -MD -MP -MF .deps/gsnap_avx512-bzip2.Tpo -c -o gsnap_avx512-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/gmap_avx512-bitpack64-readtwo.Tpo .deps/gmap_avx512-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-reader.o -MD -MP -MF .deps/gsnap_avx512-reader.Tpo -c -o gsnap_avx512-reader.o `test -f 'reader.c' || echo './'`reader.c | |
| mv -f .deps/gmap_avx512-request.Tpo .deps/gmap_avx512-request.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-genomicpos.o -MD -MP -MF .deps/gsnap_avx512-genomicpos.Tpo -c -o gsnap_avx512-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/gmap_avx512-genome_sites.Tpo .deps/gmap_avx512-genome_sites.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-compress.o -MD -MP -MF .deps/gsnap_avx512-compress.Tpo -c -o gsnap_avx512-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/gmapl_avx512-popcount.Tpo .deps/gmapl_avx512-popcount.Po | |
| mv -f .deps/gmap_avx512-samheader.Tpo .deps/gmap_avx512-samheader.Po | |
| mv -f .deps/gmap_avx512-pbinom.Tpo .deps/gmap_avx512-pbinom.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-genome.o -MD -MP -MF .deps/gsnap_avx512-genome.Tpo -c -o gsnap_avx512-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| mv -f .deps/gmapl_avx512-bigendian.Tpo .deps/gmapl_avx512-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-transcriptome.o -MD -MP -MF .deps/gsnap_avx512-transcriptome.Tpo -c -o gsnap_avx512-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-popcount.o -MD -MP -MF .deps/gsnap_avx512-popcount.Tpo -c -o gsnap_avx512-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-genome128_hr.o -MD -MP -MF .deps/gsnap_avx512-genome128_hr.Tpo -c -o gsnap_avx512-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| mv -f .deps/gmap_avx512-maxent.Tpo .deps/gmap_avx512-maxent.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-genome128_consec.o -MD -MP -MF .deps/gsnap_avx512-genome128_consec.Tpo -c -o gsnap_avx512-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| mv -f .deps/gmap_avx512-getline.Tpo .deps/gmap_avx512-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-genome_sites.o -MD -MP -MF .deps/gsnap_avx512-genome_sites.Tpo -c -o gsnap_avx512-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c | |
| mv -f .deps/gmap_avx512-boyer-moore.Tpo .deps/gmap_avx512-boyer-moore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-bitpack64-read.o -MD -MP -MF .deps/gsnap_avx512-bitpack64-read.Tpo -c -o gsnap_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| mv -f .deps/gmapl_avx512-except.Tpo .deps/gmapl_avx512-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gsnap_avx512-bitpack64-readtwo.Tpo -c -o gsnap_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/gmapl_avx512-semaphore.Tpo .deps/gmapl_avx512-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-merge-uint4.o -MD -MP -MF .deps/gsnap_avx512-merge-uint4.Tpo -c -o gsnap_avx512-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c | |
| mv -f .deps/gmapl_avx512-stopwatch.Tpo .deps/gmapl_avx512-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-merge-diagonals-simd-uint4.o -MD -MP -MF .deps/gsnap_avx512-merge-diagonals-simd-uint4.Tpo -c -o gsnap_avx512-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c | |
| mv -f .deps/gmapl_avx512-mem.Tpo .deps/gmapl_avx512-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-indexdb.o -MD -MP -MF .deps/gsnap_avx512-indexdb.Tpo -c -o gsnap_avx512-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/gmapl_avx512-uint8list.Tpo .deps/gmapl_avx512-uint8list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gsnap_avx512-epu16-bitpack64-read.Tpo -c -o gsnap_avx512-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| mv -f .deps/gmapl_avx512-univinterval.Tpo .deps/gmapl_avx512-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gsnap_avx512-epu16-bitpack64-readtwo.Tpo -c -o gsnap_avx512-epu16-bitpack64-readtwo.o `test -f 'epu16-bitpack64-readtwo.c' || echo './'`epu16-bitpack64-readtwo.c | |
| mv -f .deps/gmapl_avx512-uintlist.Tpo .deps/gmapl_avx512-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-localdb.o -MD -MP -MF .deps/gsnap_avx512-localdb.Tpo -c -o gsnap_avx512-localdb.o `test -f 'localdb.c' || echo './'`localdb.c | |
| mv -f .deps/gmap_avx512-stage1.Tpo .deps/gmap_avx512-stage1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-oligo.o -MD -MP -MF .deps/gsnap_avx512-oligo.Tpo -c -o gsnap_avx512-oligo.o `test -f 'oligo.c' || echo './'`oligo.c | |
| mv -f .deps/gmapl_avx512-interval.Tpo .deps/gmapl_avx512-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-chrnum.o -MD -MP -MF .deps/gsnap_avx512-chrnum.Tpo -c -o gsnap_avx512-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c | |
| mv -f .deps/gmapl_avx512-intlist.Tpo .deps/gmapl_avx512-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-maxent_hr.o -MD -MP -MF .deps/gsnap_avx512-maxent_hr.Tpo -c -o gsnap_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c | |
| mv -f .deps/gmapl_avx512-list.Tpo .deps/gmapl_avx512-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-cigar.o -MD -MP -MF .deps/gsnap_avx512-cigar.Tpo -c -o gsnap_avx512-cigar.o `test -f 'cigar.c' || echo './'`cigar.c | |
| mv -f .deps/gmap_avx512-parserange.Tpo .deps/gmap_avx512-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-samprint.o -MD -MP -MF .deps/gsnap_avx512-samprint.Tpo -c -o gsnap_avx512-samprint.o `test -f 'samprint.c' || echo './'`samprint.c | |
| mv -f .deps/gmap_avx512-indexdb.Tpo .deps/gmap_avx512-indexdb.Po | |
| mv -f .deps/gmap_avx512-pairpool.Tpo .deps/gmap_avx512-pairpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-mapq.o -MD -MP -MF .deps/gsnap_avx512-mapq.Tpo -c -o gsnap_avx512-mapq.o `test -f 'mapq.c' || echo './'`mapq.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-fopen.o -MD -MP -MF .deps/gsnap_avx512-fopen.Tpo -c -o gsnap_avx512-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/gmapl_avx512-bzip2.Tpo .deps/gmapl_avx512-bzip2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-shortread.o -MD -MP -MF .deps/gsnap_avx512-shortread.Tpo -c -o gsnap_avx512-shortread.o `test -f 'shortread.c' || echo './'`shortread.c | |
| mv -f .deps/gmap_avx512-datadir.Tpo .deps/gmap_avx512-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-substring.o -MD -MP -MF .deps/gsnap_avx512-substring.Tpo -c -o gsnap_avx512-substring.o `test -f 'substring.c' || echo './'`substring.c | |
| mv -f .deps/gmapl_avx512-gbuffer.Tpo .deps/gmapl_avx512-gbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-junction.o -MD -MP -MF .deps/gsnap_avx512-junction.Tpo -c -o gsnap_avx512-junction.o `test -f 'junction.c' || echo './'`junction.c | |
| mv -f .deps/gmapl_avx512-fopen.Tpo .deps/gmapl_avx512-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-transcript.o -MD -MP -MF .deps/gsnap_avx512-transcript.Tpo -c -o gsnap_avx512-transcript.o `test -f 'transcript.c' || echo './'`transcript.c | |
| mv -f .deps/gmapl_avx512-reader.Tpo .deps/gmapl_avx512-reader.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-method.o -MD -MP -MF .deps/gsnap_avx512-method.Tpo -c -o gsnap_avx512-method.o `test -f 'method.c' || echo './'`method.c | |
| mv -f .deps/gmapl_avx512-genomicpos.Tpo .deps/gmapl_avx512-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-stage3hr.o -MD -MP -MF .deps/gsnap_avx512-stage3hr.Tpo -c -o gsnap_avx512-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c | |
| mv -f .deps/gmapl_avx512-md5.Tpo .deps/gmapl_avx512-md5.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-ladder.o -MD -MP -MF .deps/gsnap_avx512-ladder.Tpo -c -o gsnap_avx512-ladder.o `test -f 'ladder.c' || echo './'`ladder.c | |
| mv -f .deps/gmap_avx512-genome.Tpo .deps/gmap_avx512-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-concordance.o -MD -MP -MF .deps/gsnap_avx512-concordance.Tpo -c -o gsnap_avx512-concordance.o `test -f 'concordance.c' || echo './'`concordance.c | |
| mv -f .deps/gmapl_avx512-atoi.Tpo .deps/gmapl_avx512-atoi.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-simplepair.o -MD -MP -MF .deps/gsnap_avx512-simplepair.Tpo -c -o gsnap_avx512-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c | |
| mv -f .deps/gmapl_avx512-cmet.Tpo .deps/gmapl_avx512-cmet.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-maxent.o -MD -MP -MF .deps/gsnap_avx512-maxent.Tpo -c -o gsnap_avx512-maxent.o `test -f 'maxent.c' || echo './'`maxent.c | |
| mv -f .deps/gmapl_avx512-filestring.Tpo .deps/gmapl_avx512-filestring.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-orderstat.o -MD -MP -MF .deps/gsnap_avx512-orderstat.Tpo -c -o gsnap_avx512-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c | |
| mv -f .deps/gmap_avx512-result.Tpo .deps/gmap_avx512-result.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-intlistpool.o -MD -MP -MF .deps/gsnap_avx512-intlistpool.Tpo -c -o gsnap_avx512-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c | |
| mv -f .deps/trindex-iit-read.Tpo .deps/trindex-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-uintlistpool.o -MD -MP -MF .deps/gsnap_avx512-uintlistpool.Tpo -c -o gsnap_avx512-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c | |
| mv -f .deps/gmap_avx512-smooth.Tpo .deps/gmap_avx512-smooth.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-listpool.o -MD -MP -MF .deps/gsnap_avx512-listpool.Tpo -c -o gsnap_avx512-listpool.o `test -f 'listpool.c' || echo './'`listpool.c | |
| mv -f .deps/gmap_avx512-inbuffer.Tpo .deps/gmap_avx512-inbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-hitlistpool.o -MD -MP -MF .deps/gsnap_avx512-hitlistpool.Tpo -c -o gsnap_avx512-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c | |
| mv -f .deps/gmapl_avx512-epu16-bitpack64-read.Tpo .deps/gmapl_avx512-epu16-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-intron.o -MD -MP -MF .deps/gsnap_avx512-intron.Tpo -c -o gsnap_avx512-intron.o `test -f 'intron.c' || echo './'`intron.c | |
| mv -f .deps/gmap_avx512-maxent_hr.Tpo .deps/gmap_avx512-maxent_hr.Po | |
| mv -f .deps/gmap_avx512-splicetrie.Tpo .deps/gmap_avx512-splicetrie.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-gbuffer.o -MD -MP -MF .deps/gsnap_avx512-gbuffer.Tpo -c -o gsnap_avx512-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-knownsplicing.o -MD -MP -MF .deps/gsnap_avx512-knownsplicing.Tpo -c -o gsnap_avx512-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c | |
| mv -f .deps/gmapl_avx512-epu16-bitpack64-readtwo.Tpo .deps/gmapl_avx512-epu16-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-splice.o -MD -MP -MF .deps/gsnap_avx512-splice.Tpo -c -o gsnap_avx512-splice.o `test -f 'splice.c' || echo './'`splice.c | |
| mv -f .deps/gmap_avx512-output.Tpo .deps/gmap_avx512-output.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-indel.o -MD -MP -MF .deps/gsnap_avx512-indel.Tpo -c -o gsnap_avx512-indel.o `test -f 'indel.c' || echo './'`indel.c | |
| mv -f .deps/gmap_avx512-dynprog.Tpo .deps/gmap_avx512-dynprog.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-bitpack64-access.o -MD -MP -MF .deps/gsnap_avx512-bitpack64-access.Tpo -c -o gsnap_avx512-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/gmapl_avx512-diagnostic.Tpo .deps/gmapl_avx512-diagnostic.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-univdiag.o -MD -MP -MF .deps/gsnap_avx512-univdiag.Tpo -c -o gsnap_avx512-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c | |
| mv -f .deps/gmapl_avx512-compress.Tpo .deps/gmapl_avx512-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-univdiagpool.o -MD -MP -MF .deps/gsnap_avx512-univdiagpool.Tpo -c -o gsnap_avx512-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c | |
| mv -f .deps/sam_sort-iit-read.Tpo .deps/sam_sort-iit-read.Po | |
| mv -f .deps/gmapl_avx512-compress-write.Tpo .deps/gmapl_avx512-compress-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-sedgesort.o -MD -MP -MF .deps/gsnap_avx512-sedgesort.Tpo -c -o gsnap_avx512-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c | |
| mv -f .deps/gmapl_avx512-chrom.Tpo .deps/gmapl_avx512-chrom.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-intersect.o -MD -MP -MF .deps/gsnap_avx512-intersect.Tpo -c -o gsnap_avx512-intersect.o `test -f 'intersect.c' || echo './'`intersect.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-kmer-search.o -MD -MP -MF .deps/gsnap_avx512-kmer-search.Tpo -c -o gsnap_avx512-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c | |
| mv -f .deps/gmap_avx512-outbuffer.Tpo .deps/gmap_avx512-outbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-path-solve.o -MD -MP -MF .deps/gsnap_avx512-path-solve.Tpo -c -o gsnap_avx512-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c | |
| mv -f .deps/gmapl_avx512-diagpool.Tpo .deps/gmapl_avx512-diagpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-extension-search.o -MD -MP -MF .deps/gsnap_avx512-extension-search.Tpo -c -o gsnap_avx512-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c | |
| mv -f .deps/gmapl_avx512-access.Tpo .deps/gmapl_avx512-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-segment-search.o -MD -MP -MF .deps/gsnap_avx512-segment-search.Tpo -c -o gsnap_avx512-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c | |
| mv -f .deps/gmap_avx512-dynprog_single.Tpo .deps/gmap_avx512-dynprog_single.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-terminal.o -MD -MP -MF .deps/gsnap_avx512-terminal.Tpo -c -o gsnap_avx512-terminal.o `test -f 'terminal.c' || echo './'`terminal.c | |
| mv -f .deps/gmapl_avx512-orderstat.Tpo .deps/gmapl_avx512-orderstat.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-distant-rna.o -MD -MP -MF .deps/gsnap_avx512-distant-rna.Tpo -c -o gsnap_avx512-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c | |
| mv -f .deps/gmapl_avx512-uinttable_rh.Tpo .deps/gmapl_avx512-uinttable_rh.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-distant-dna.o -MD -MP -MF .deps/gsnap_avx512-distant-dna.Tpo -c -o gsnap_avx512-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c | |
| mv -f .deps/gmapl_avx512-block.Tpo .deps/gmapl_avx512-block.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-uint8table_rh.o -MD -MP -MF .deps/gsnap_avx512-uint8table_rh.Tpo -c -o gsnap_avx512-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c | |
| mv -f .deps/gmap_avx512-dynprog_cdna.Tpo .deps/gmap_avx512-dynprog_cdna.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-uinttable_rh.o -MD -MP -MF .deps/gsnap_avx512-uinttable_rh.Tpo -c -o gsnap_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c | |
| mv -f .deps/gmapl_avx512-oligo.Tpo .deps/gmapl_avx512-oligo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-stage1hr.o -MD -MP -MF .deps/gsnap_avx512-stage1hr.Tpo -c -o gsnap_avx512-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c | |
| mv -f .deps/gmapl_avx512-segmentpos.Tpo .deps/gmapl_avx512-segmentpos.Po | |
| mv -f .deps/gmapl_avx512-chrnum.Tpo .deps/gmapl_avx512-chrnum.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-request.o -MD -MP -MF .deps/gsnap_avx512-request.Tpo -c -o gsnap_avx512-request.o `test -f 'request.c' || echo './'`request.c | |
| mv -f .deps/gmapl_avx512-sequence.Tpo .deps/gmapl_avx512-sequence.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-resulthr.o -MD -MP -MF .deps/gsnap_avx512-resulthr.Tpo -c -o gsnap_avx512-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-output.o -MD -MP -MF .deps/gsnap_avx512-output.Tpo -c -o gsnap_avx512-output.o `test -f 'output.c' || echo './'`output.c | |
| mv -f .deps/gmap_avx512-splicetrie_build.Tpo .deps/gmap_avx512-splicetrie_build.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-inbuffer.o -MD -MP -MF .deps/gsnap_avx512-inbuffer.Tpo -c -o gsnap_avx512-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c | |
| mv -f .deps/gmapl_avx512-diag.Tpo .deps/gmapl_avx512-diag.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-samheader.o -MD -MP -MF .deps/gsnap_avx512-samheader.Tpo -c -o gsnap_avx512-samheader.o `test -f 'samheader.c' || echo './'`samheader.c | |
| mv -f .deps/gmapl_avx512-cellpool.Tpo .deps/gmapl_avx512-cellpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-outbuffer.o -MD -MP -MF .deps/gsnap_avx512-outbuffer.Tpo -c -o gsnap_avx512-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c | |
| mv -f .deps/gmapl_avx512-doublelist.Tpo .deps/gmapl_avx512-doublelist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-datadir.o -MD -MP -MF .deps/gsnap_avx512-datadir.Tpo -c -o gsnap_avx512-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| mv -f .deps/gsnap_avx512-assert.Tpo .deps/gsnap_avx512-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-parserange.o -MD -MP -MF .deps/gsnap_avx512-parserange.Tpo -c -o gsnap_avx512-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| mv -f .deps/gmapl_avx512-splicestringpool.Tpo .deps/gmapl_avx512-splicestringpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-getline.o -MD -MP -MF .deps/gsnap_avx512-getline.Tpo -c -o gsnap_avx512-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/gmapl_avx512-getopt.Tpo .deps/gmapl_avx512-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-getopt.o -MD -MP -MF .deps/gsnap_avx512-getopt.Tpo -c -o gsnap_avx512-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/gmapl_avx512-matchpool.Tpo .deps/gmapl_avx512-matchpool.Po | |
| mv -f .deps/gmapl_avx512-genome-write.Tpo .deps/gmapl_avx512-genome-write.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-getopt1.o -MD -MP -MF .deps/gsnap_avx512-getopt1.Tpo -c -o gsnap_avx512-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnap_avx512-gsnap.o -MD -MP -MF .deps/gsnap_avx512-gsnap.Tpo -c -o gsnap_avx512-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c | |
| mv -f .deps/gmapl_avx512-intron.Tpo .deps/gmapl_avx512-intron.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-except.o -MD -MP -MF .deps/gsnapl_avx512-except.Tpo -c -o gsnapl_avx512-except.o `test -f 'except.c' || echo './'`except.c | |
| mv -f .deps/gmap_avx512-translation.Tpo .deps/gmap_avx512-translation.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-assert.o -MD -MP -MF .deps/gsnapl_avx512-assert.Tpo -c -o gsnapl_avx512-assert.o `test -f 'assert.c' || echo './'`assert.c | |
| mv -f .deps/gmap_avx512-iit-read.Tpo .deps/gmap_avx512-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-mem.o -MD -MP -MF .deps/gsnapl_avx512-mem.Tpo -c -o gsnapl_avx512-mem.o `test -f 'mem.c' || echo './'`mem.c | |
| mv -f .deps/gmapl_avx512-match.Tpo .deps/gmapl_avx512-match.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-intlist.o -MD -MP -MF .deps/gsnapl_avx512-intlist.Tpo -c -o gsnapl_avx512-intlist.o `test -f 'intlist.c' || echo './'`intlist.c | |
| mv -f .deps/gmap_avx512-dynprog_end.Tpo .deps/gmap_avx512-dynprog_end.Po | |
| mv -f .deps/gmap_avx512-chimera.Tpo .deps/gmap_avx512-chimera.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-uintlist.o -MD -MP -MF .deps/gsnapl_avx512-uintlist.Tpo -c -o gsnapl_avx512-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-uint8list.o -MD -MP -MF .deps/gsnapl_avx512-uint8list.Tpo -c -o gsnapl_avx512-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c | |
| mv -f .deps/gmapl_avx512-getopt1.Tpo .deps/gmapl_avx512-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-list.o -MD -MP -MF .deps/gsnapl_avx512-list.Tpo -c -o gsnapl_avx512-list.o `test -f 'list.c' || echo './'`list.c | |
| mv -f .deps/gmapl_avx512-changepoint.Tpo .deps/gmapl_avx512-changepoint.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-littleendian.o -MD -MP -MF .deps/gsnapl_avx512-littleendian.Tpo -c -o gsnapl_avx512-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c | |
| mv -f .deps/gmapl_avx512-iit-read-univ.Tpo .deps/gmapl_avx512-iit-read-univ.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-bigendian.o -MD -MP -MF .deps/gsnapl_avx512-bigendian.Tpo -c -o gsnapl_avx512-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c | |
| mv -f .deps/gsnap_avx512-littleendian.Tpo .deps/gsnap_avx512-littleendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-univinterval.o -MD -MP -MF .deps/gsnapl_avx512-univinterval.Tpo -c -o gsnapl_avx512-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c | |
| mv -f .deps/gmapl_avx512-gregion.Tpo .deps/gmapl_avx512-gregion.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-interval.o -MD -MP -MF .deps/gsnapl_avx512-interval.Tpo -c -o gsnapl_avx512-interval.o `test -f 'interval.c' || echo './'`interval.c | |
| mv -f .deps/gmap_avx512-dynprog_genome.Tpo .deps/gmap_avx512-dynprog_genome.Po | |
| mv -f .deps/gmap_avx512-genome128_hr.Tpo .deps/gmap_avx512-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-stopwatch.o -MD -MP -MF .deps/gsnapl_avx512-stopwatch.Tpo -c -o gsnapl_avx512-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-semaphore.o -MD -MP -MF .deps/gsnapl_avx512-semaphore.Tpo -c -o gsnapl_avx512-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c | |
| mv -f .deps/gmap_avx512-stage2.Tpo .deps/gmap_avx512-stage2.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-access.o -MD -MP -MF .deps/gsnapl_avx512-access.Tpo -c -o gsnapl_avx512-access.o `test -f 'access.c' || echo './'`access.c | |
| mv -f .deps/gmapl_avx512-transcript.Tpo .deps/gmapl_avx512-transcript.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-filestring.o -MD -MP -MF .deps/gsnapl_avx512-filestring.Tpo -c -o gsnapl_avx512-filestring.o `test -f 'filestring.c' || echo './'`filestring.c | |
| mv -f .deps/gmapl_avx512-request.Tpo .deps/gmapl_avx512-request.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-iit-read-univ.o -MD -MP -MF .deps/gsnapl_avx512-iit-read-univ.Tpo -c -o gsnapl_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c | |
| mv -f .deps/gsnap_avx512-bigendian.Tpo .deps/gsnap_avx512-bigendian.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-iit-read.o -MD -MP -MF .deps/gsnapl_avx512-iit-read.Tpo -c -o gsnapl_avx512-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c | |
| mv -f .deps/gmapl_avx512-boyer-moore.Tpo .deps/gmapl_avx512-boyer-moore.Po | |
| mv -f .deps/gsnap_avx512-popcount.Tpo .deps/gsnap_avx512-popcount.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-bzip2.o -MD -MP -MF .deps/gsnapl_avx512-bzip2.Tpo -c -o gsnapl_avx512-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c | |
| mv -f .deps/gmapl_avx512-bitpack64-readtwo.Tpo .deps/gmapl_avx512-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-reader.o -MD -MP -MF .deps/gsnapl_avx512-reader.Tpo -c -o gsnapl_avx512-reader.o `test -f 'reader.c' || echo './'`reader.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-genomicpos.o -MD -MP -MF .deps/gsnapl_avx512-genomicpos.Tpo -c -o gsnapl_avx512-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c | |
| mv -f .deps/gmapl_avx512-bitpack64-read.Tpo .deps/gmapl_avx512-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-compress.o -MD -MP -MF .deps/gsnapl_avx512-compress.Tpo -c -o gsnapl_avx512-compress.o `test -f 'compress.c' || echo './'`compress.c | |
| mv -f .deps/gmapl_avx512-pbinom.Tpo .deps/gmapl_avx512-pbinom.Po | |
| mv -f .deps/gmapl_avx512-samheader.Tpo .deps/gmapl_avx512-samheader.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-genome.o -MD -MP -MF .deps/gsnapl_avx512-genome.Tpo -c -o gsnapl_avx512-genome.o `test -f 'genome.c' || echo './'`genome.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-transcriptome.o -MD -MP -MF .deps/gsnapl_avx512-transcriptome.Tpo -c -o gsnapl_avx512-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c | |
| mv -f .deps/gmap_avx512-dynprog_simd.Tpo .deps/gmap_avx512-dynprog_simd.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-popcount.o -MD -MP -MF .deps/gsnapl_avx512-popcount.Tpo -c -o gsnapl_avx512-popcount.o `test -f 'popcount.c' || echo './'`popcount.c | |
| mv -f .deps/gmapl_avx512-genome_sites.Tpo .deps/gmapl_avx512-genome_sites.Po | |
| mv -f .deps/gmapl_avx512-getline.Tpo .deps/gmapl_avx512-getline.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-genome128_hr.o -MD -MP -MF .deps/gsnapl_avx512-genome128_hr.Tpo -c -o gsnapl_avx512-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-genome128_consec.o -MD -MP -MF .deps/gsnapl_avx512-genome128_consec.Tpo -c -o gsnapl_avx512-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c | |
| mv -f .deps/gsnap_avx512-except.Tpo .deps/gsnap_avx512-except.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-genome_sites.o -MD -MP -MF .deps/gsnapl_avx512-genome_sites.Tpo -c -o gsnapl_avx512-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c | |
| mv -f .deps/gmapl_avx512-maxent.Tpo .deps/gmapl_avx512-maxent.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-bitpack64-read.o -MD -MP -MF .deps/gsnapl_avx512-bitpack64-read.Tpo -c -o gsnapl_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c | |
| mv -f .deps/gsnap_avx512-univinterval.Tpo .deps/gsnap_avx512-univinterval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gsnapl_avx512-bitpack64-readtwo.Tpo -c -o gsnapl_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c | |
| mv -f .deps/gsnap_avx512-mem.Tpo .deps/gsnap_avx512-mem.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-merge-diagonals-heap.o -MD -MP -MF .deps/gsnapl_avx512-merge-diagonals-heap.Tpo -c -o gsnapl_avx512-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c | |
| mv -f .deps/gsnap_avx512-stopwatch.Tpo .deps/gsnap_avx512-stopwatch.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-merge-uint8.o -MD -MP -MF .deps/gsnapl_avx512-merge-uint8.Tpo -c -o gsnapl_avx512-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c | |
| mv -f .deps/gmapl_avx512-indexdb.Tpo .deps/gmapl_avx512-indexdb.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-merge-diagonals-simd-uint8.o -MD -MP -MF .deps/gsnapl_avx512-merge-diagonals-simd-uint8.Tpo -c -o gsnapl_avx512-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c | |
| mv -f .deps/gsnap_avx512-interval.Tpo .deps/gsnap_avx512-interval.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-merge-uint4.o -MD -MP -MF .deps/gsnapl_avx512-merge-uint4.Tpo -c -o gsnapl_avx512-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c | |
| mv -f .deps/gsnap_avx512-list.Tpo .deps/gsnap_avx512-list.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-merge-diagonals-simd-uint4.o -MD -MP -MF .deps/gsnapl_avx512-merge-diagonals-simd-uint4.Tpo -c -o gsnapl_avx512-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c | |
| mv -f .deps/gsnap_avx512-uintlist.Tpo .deps/gsnap_avx512-uintlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-indexdb.o -MD -MP -MF .deps/gsnapl_avx512-indexdb.Tpo -c -o gsnapl_avx512-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c | |
| mv -f .deps/gsnap_avx512-semaphore.Tpo .deps/gsnap_avx512-semaphore.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gsnapl_avx512-epu16-bitpack64-read.Tpo -c -o gsnapl_avx512-epu16-bitpack64-read.o `test -f 'epu16-bitpack64-read.c' || echo './'`epu16-bitpack64-read.c | |
| mv -f .deps/gsnap_avx512-intlist.Tpo .deps/gsnap_avx512-intlist.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gsnapl_avx512-epu16-bitpack64-readtwo.Tpo -c -o gsnapl_avx512-epu16-bitpack64-readtwo.o `test -f 'epu16-bitpack64-readtwo.c' || echo './'`epu16-bitpack64-readtwo.c | |
| mv -f .deps/gmapl_avx512-parserange.Tpo .deps/gmapl_avx512-parserange.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-localdb.o -MD -MP -MF .deps/gsnapl_avx512-localdb.Tpo -c -o gsnapl_avx512-localdb.o `test -f 'localdb.c' || echo './'`localdb.c | |
| mv -f .deps/gmapl_avx512-genome.Tpo .deps/gmapl_avx512-genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-oligo.o -MD -MP -MF .deps/gsnapl_avx512-oligo.Tpo -c -o gsnapl_avx512-oligo.o `test -f 'oligo.c' || echo './'`oligo.c | |
| mv -f .deps/gmapl_avx512-datadir.Tpo .deps/gmapl_avx512-datadir.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-chrnum.o -MD -MP -MF .deps/gsnapl_avx512-chrnum.Tpo -c -o gsnapl_avx512-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c | |
| mv -f .deps/gmapl_avx512-pairpool.Tpo .deps/gmapl_avx512-pairpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-maxent_hr.o -MD -MP -MF .deps/gsnapl_avx512-maxent_hr.Tpo -c -o gsnapl_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c | |
| mv -f .deps/gsnap_avx512-reader.Tpo .deps/gsnap_avx512-reader.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-cigar.o -MD -MP -MF .deps/gsnapl_avx512-cigar.Tpo -c -o gsnapl_avx512-cigar.o `test -f 'cigar.c' || echo './'`cigar.c | |
| mv -f .deps/gmapl_avx512-stage1.Tpo .deps/gmapl_avx512-stage1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-samprint.o -MD -MP -MF .deps/gsnapl_avx512-samprint.Tpo -c -o gsnapl_avx512-samprint.o `test -f 'samprint.c' || echo './'`samprint.c | |
| mv -f .deps/gsnap_avx512-bzip2.Tpo .deps/gsnap_avx512-bzip2.Po | |
| mv -f .deps/gsnap_avx512-genomicpos.Tpo .deps/gsnap_avx512-genomicpos.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-mapq.o -MD -MP -MF .deps/gsnapl_avx512-mapq.Tpo -c -o gsnapl_avx512-mapq.o `test -f 'mapq.c' || echo './'`mapq.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-fopen.o -MD -MP -MF .deps/gsnapl_avx512-fopen.Tpo -c -o gsnapl_avx512-fopen.o `test -f 'fopen.c' || echo './'`fopen.c | |
| mv -f .deps/gmapl_avx512-smooth.Tpo .deps/gmapl_avx512-smooth.Po | |
| mv -f .deps/gmapl_avx512-inbuffer.Tpo .deps/gmapl_avx512-inbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-shortread.o -MD -MP -MF .deps/gsnapl_avx512-shortread.Tpo -c -o gsnapl_avx512-shortread.o `test -f 'shortread.c' || echo './'`shortread.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-substring.o -MD -MP -MF .deps/gsnapl_avx512-substring.Tpo -c -o gsnapl_avx512-substring.o `test -f 'substring.c' || echo './'`substring.c | |
| mv -f .deps/gsnap_avx512-filestring.Tpo .deps/gsnap_avx512-filestring.Po | |
| mv -f .deps/gmapl_avx512-result.Tpo .deps/gmapl_avx512-result.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-junction.o -MD -MP -MF .deps/gsnapl_avx512-junction.Tpo -c -o gsnapl_avx512-junction.o `test -f 'junction.c' || echo './'`junction.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-transcript.o -MD -MP -MF .deps/gsnapl_avx512-transcript.Tpo -c -o gsnapl_avx512-transcript.o `test -f 'transcript.c' || echo './'`transcript.c | |
| mv -f .deps/gmap_avx512-pair.Tpo .deps/gmap_avx512-pair.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-method.o -MD -MP -MF .deps/gsnapl_avx512-method.Tpo -c -o gsnapl_avx512-method.o `test -f 'method.c' || echo './'`method.c | |
| mv -f .deps/gmapl_avx512-splicetrie.Tpo .deps/gmapl_avx512-splicetrie.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-stage3hr.o -MD -MP -MF .deps/gsnapl_avx512-stage3hr.Tpo -c -o gsnapl_avx512-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c | |
| mv -f .deps/gmapl_avx512-output.Tpo .deps/gmapl_avx512-output.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-ladder.o -MD -MP -MF .deps/gsnapl_avx512-ladder.Tpo -c -o gsnapl_avx512-ladder.o `test -f 'ladder.c' || echo './'`ladder.c | |
| mv -f .deps/gmapl_avx512-dynprog.Tpo .deps/gmapl_avx512-dynprog.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-concordance.o -MD -MP -MF .deps/gsnapl_avx512-concordance.Tpo -c -o gsnapl_avx512-concordance.o `test -f 'concordance.c' || echo './'`concordance.c | |
| mv -f .deps/gsnap_avx512-compress.Tpo .deps/gsnap_avx512-compress.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-simplepair.o -MD -MP -MF .deps/gsnapl_avx512-simplepair.Tpo -c -o gsnapl_avx512-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c | |
| mv -f .deps/gmapl_avx512-dynprog_single.Tpo .deps/gmapl_avx512-dynprog_single.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-maxent.o -MD -MP -MF .deps/gsnapl_avx512-maxent.Tpo -c -o gsnapl_avx512-maxent.o `test -f 'maxent.c' || echo './'`maxent.c | |
| mv -f .deps/gmapl_avx512-outbuffer.Tpo .deps/gmapl_avx512-outbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-orderstat.o -MD -MP -MF .deps/gsnapl_avx512-orderstat.Tpo -c -o gsnapl_avx512-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c | |
| mv -f .deps/gsnap_avx512-access.Tpo .deps/gsnap_avx512-access.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-intlistpool.o -MD -MP -MF .deps/gsnapl_avx512-intlistpool.Tpo -c -o gsnapl_avx512-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c | |
| mv -f .deps/gmapl_avx512-splicetrie_build.Tpo .deps/gmapl_avx512-splicetrie_build.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-uint8listpool.o -MD -MP -MF .deps/gsnapl_avx512-uint8listpool.Tpo -c -o gsnapl_avx512-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c | |
| mv -f .deps/gsnap_avx512-method.Tpo .deps/gsnap_avx512-method.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-listpool.o -MD -MP -MF .deps/gsnapl_avx512-listpool.Tpo -c -o gsnapl_avx512-listpool.o `test -f 'listpool.c' || echo './'`listpool.c | |
| mv -f .deps/gsnap_avx512-transcriptome.Tpo .deps/gsnap_avx512-transcriptome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-hitlistpool.o -MD -MP -MF .deps/gsnapl_avx512-hitlistpool.Tpo -c -o gsnapl_avx512-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c | |
| mv -f .deps/gmapl_avx512-dynprog_cdna.Tpo .deps/gmapl_avx512-dynprog_cdna.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-intron.o -MD -MP -MF .deps/gsnapl_avx512-intron.Tpo -c -o gsnapl_avx512-intron.o `test -f 'intron.c' || echo './'`intron.c | |
| mv -f .deps/gsnap_avx512-epu16-bitpack64-read.Tpo .deps/gsnap_avx512-epu16-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-gbuffer.o -MD -MP -MF .deps/gsnapl_avx512-gbuffer.Tpo -c -o gsnapl_avx512-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c | |
| mv -f .deps/gsnap_avx512-epu16-bitpack64-readtwo.Tpo .deps/gsnap_avx512-epu16-bitpack64-readtwo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-knownsplicing.o -MD -MP -MF .deps/gsnapl_avx512-knownsplicing.Tpo -c -o gsnapl_avx512-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c | |
| mv -f .deps/gmapl_avx512-maxent_hr.Tpo .deps/gmapl_avx512-maxent_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-splice.o -MD -MP -MF .deps/gsnapl_avx512-splice.Tpo -c -o gsnapl_avx512-splice.o `test -f 'splice.c' || echo './'`splice.c | |
| mv -f .deps/gmapl_avx512-translation.Tpo .deps/gmapl_avx512-translation.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-indel.o -MD -MP -MF .deps/gsnapl_avx512-indel.Tpo -c -o gsnapl_avx512-indel.o `test -f 'indel.c' || echo './'`indel.c | |
| mv -f .deps/gmap_avx512-gmap.Tpo .deps/gmap_avx512-gmap.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-bitpack64-access.o -MD -MP -MF .deps/gsnapl_avx512-bitpack64-access.Tpo -c -o gsnapl_avx512-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c | |
| mv -f .deps/gsnap_avx512-fopen.Tpo .deps/gsnap_avx512-fopen.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-univdiag.o -MD -MP -MF .deps/gsnapl_avx512-univdiag.Tpo -c -o gsnapl_avx512-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c | |
| mv -f .deps/gmapl_avx512-genome128_hr.Tpo .deps/gmapl_avx512-genome128_hr.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-univdiagpool.o -MD -MP -MF .deps/gsnapl_avx512-univdiagpool.Tpo -c -o gsnapl_avx512-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c | |
| mv -f .deps/gsnap_avx512-orderstat.Tpo .deps/gsnap_avx512-orderstat.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-sedgesort.o -MD -MP -MF .deps/gsnapl_avx512-sedgesort.Tpo -c -o gsnapl_avx512-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c | |
| mv -f .deps/gsnap_avx512-chrnum.Tpo .deps/gsnap_avx512-chrnum.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-intersect.o -MD -MP -MF .deps/gsnapl_avx512-intersect.Tpo -c -o gsnapl_avx512-intersect.o `test -f 'intersect.c' || echo './'`intersect.c | |
| mv -f .deps/gsnap_avx512-listpool.Tpo .deps/gsnap_avx512-listpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-intersect-large.o -MD -MP -MF .deps/gsnapl_avx512-intersect-large.Tpo -c -o gsnapl_avx512-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c | |
| mv -f .deps/gsnap_avx512-intlistpool.Tpo .deps/gsnap_avx512-intlistpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-kmer-search.o -MD -MP -MF .deps/gsnapl_avx512-kmer-search.Tpo -c -o gsnapl_avx512-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c | |
| mv -f .deps/gsnap_avx512-oligo.Tpo .deps/gsnap_avx512-oligo.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-path-solve.o -MD -MP -MF .deps/gsnapl_avx512-path-solve.Tpo -c -o gsnapl_avx512-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c | |
| mv -f .deps/gsnap_avx512-uintlistpool.Tpo .deps/gsnap_avx512-uintlistpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-extension-search.o -MD -MP -MF .deps/gsnapl_avx512-extension-search.Tpo -c -o gsnapl_avx512-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c | |
| mv -f .deps/gsnapl_avx512-assert.Tpo .deps/gsnapl_avx512-assert.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-segment-search.o -MD -MP -MF .deps/gsnapl_avx512-segment-search.Tpo -c -o gsnapl_avx512-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c | |
| mv -f .deps/gmapl_avx512-iit-read.Tpo .deps/gmapl_avx512-iit-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-terminal.o -MD -MP -MF .deps/gsnapl_avx512-terminal.Tpo -c -o gsnapl_avx512-terminal.o `test -f 'terminal.c' || echo './'`terminal.c | |
| mv -f .deps/gmapl_avx512-chimera.Tpo .deps/gmapl_avx512-chimera.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-distant-rna.o -MD -MP -MF .deps/gsnapl_avx512-distant-rna.Tpo -c -o gsnapl_avx512-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c | |
| mv -f .deps/gmapl_avx512-dynprog_end.Tpo .deps/gmapl_avx512-dynprog_end.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-distant-dna.o -MD -MP -MF .deps/gsnapl_avx512-distant-dna.Tpo -c -o gsnapl_avx512-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c | |
| mv -f .deps/gsnap_avx512-gbuffer.Tpo .deps/gsnap_avx512-gbuffer.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-uint8table_rh.o -MD -MP -MF .deps/gsnapl_avx512-uint8table_rh.Tpo -c -o gsnapl_avx512-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c | |
| mv -f .deps/gsnap_avx512-hitlistpool.Tpo .deps/gsnap_avx512-hitlistpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-stage1hr.o -MD -MP -MF .deps/gsnapl_avx512-stage1hr.Tpo -c -o gsnapl_avx512-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c | |
| mv -f .deps/gmapl_avx512-dynprog_genome.Tpo .deps/gmapl_avx512-dynprog_genome.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-request.o -MD -MP -MF .deps/gsnapl_avx512-request.Tpo -c -o gsnapl_avx512-request.o `test -f 'request.c' || echo './'`request.c | |
| mv -f .deps/gsnap_avx512-junction.Tpo .deps/gsnap_avx512-junction.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-resulthr.o -MD -MP -MF .deps/gsnapl_avx512-resulthr.Tpo -c -o gsnapl_avx512-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c | |
| mv -f .deps/gsnap_avx512-merge-uint4.Tpo .deps/gsnap_avx512-merge-uint4.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-output.o -MD -MP -MF .deps/gsnapl_avx512-output.Tpo -c -o gsnapl_avx512-output.o `test -f 'output.c' || echo './'`output.c | |
| mv -f .deps/gsnap_avx512-getopt.Tpo .deps/gsnap_avx512-getopt.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-inbuffer.o -MD -MP -MF .deps/gsnapl_avx512-inbuffer.Tpo -c -o gsnapl_avx512-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c | |
| mv -f .deps/gsnap_avx512-mapq.Tpo .deps/gsnap_avx512-mapq.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-samheader.o -MD -MP -MF .deps/gsnapl_avx512-samheader.Tpo -c -o gsnapl_avx512-samheader.o `test -f 'samheader.c' || echo './'`samheader.c | |
| mv -f .deps/gsnap_avx512-bitpack64-read.Tpo .deps/gsnap_avx512-bitpack64-read.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-outbuffer.o -MD -MP -MF .deps/gsnapl_avx512-outbuffer.Tpo -c -o gsnapl_avx512-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c | |
| mv -f .deps/gsnap_avx512-univdiag.Tpo .deps/gsnap_avx512-univdiag.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-datadir.o -MD -MP -MF .deps/gsnapl_avx512-datadir.Tpo -c -o gsnapl_avx512-datadir.o `test -f 'datadir.c' || echo './'`datadir.c | |
| mv -f .deps/gsnap_avx512-iit-read-univ.Tpo .deps/gsnap_avx512-iit-read-univ.Po | |
| mv -f .deps/gsnap_avx512-getopt1.Tpo .deps/gsnap_avx512-getopt1.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-parserange.o -MD -MP -MF .deps/gsnapl_avx512-parserange.Tpo -c -o gsnapl_avx512-parserange.o `test -f 'parserange.c' || echo './'`parserange.c | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-getline.o -MD -MP -MF .deps/gsnapl_avx512-getline.Tpo -c -o gsnapl_avx512-getline.o `test -f 'getline.c' || echo './'`getline.c | |
| mv -f .deps/gsnap_avx512-univdiagpool.Tpo .deps/gsnap_avx512-univdiagpool.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-getopt.o -MD -MP -MF .deps/gsnapl_avx512-getopt.Tpo -c -o gsnapl_avx512-getopt.o `test -f 'getopt.c' || echo './'`getopt.c | |
| mv -f .deps/gmap_avx512-stage3.Tpo .deps/gmap_avx512-stage3.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-getopt1.o -MD -MP -MF .deps/gsnapl_avx512-getopt1.Tpo -c -o gsnapl_avx512-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c | |
| mv -f .deps/gsnap_avx512-merge-diagonals-simd-uint4.Tpo .deps/gsnap_avx512-merge-diagonals-simd-uint4.Po | |
| gcc-5 -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gsnapl_avx512-gsnap.o -MD -MP -MF .deps/gsnapl_avx512-gsnap.Tpo -c -o gsnapl_avx512-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c | |
| mv -f .deps/gsnap_avx512-genome_sites.Tpo .deps/gsnap_avx512-genome_sites.Po | |
| mv -f .deps/gsnap_avx512-sedgesort.Tpo .deps/gsnap_avx512-sedgesort.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -DMAIN=1 -O3 -fomit-frame-pointer -o cpuid cpuid-cpuid.o -lm | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -O3 -fomit-frame-pointer -o gmap gmap-cpuid.o gmap-gmap_select.o -lm | |
| mv -f .deps/gsnap_avx512-bitpack64-readtwo.Tpo .deps/gsnap_avx512-bitpack64-readtwo.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -O3 -fomit-frame-pointer -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o -lm | |
| mv -f .deps/gsnapl_avx512-popcount.Tpo .deps/gsnapl_avx512-popcount.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm | |
| mv -f .deps/gsnap_avx512-cigar.Tpo .deps/gsnap_avx512-cigar.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-genome128_consec.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-epu16-bitpack64-access.o gmapindex-epu16-bitpack64-incr.o gmapindex-epu16-bitpack64-write.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o -lz -lbz2 -lm | |
| mv -f .deps/gmapl_avx512-stage2.Tpo .deps/gmapl_avx512-stage2.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-getline.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lm | |
| mv -f .deps/gsnap_avx512-intron.Tpo .deps/gsnap_avx512-intron.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-getline.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lm | |
| mv -f .deps/gsnap_avx512-transcript.Tpo .deps/gsnap_avx512-transcript.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm | |
| mv -f .deps/gsnapl_avx512-littleendian.Tpo .deps/gsnapl_avx512-littleendian.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -O3 -fomit-frame-pointer -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o -lm | |
| mv -f .deps/gmapl_avx512-dynprog_simd.Tpo .deps/gmapl_avx512-dynprog_simd.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -O3 -fomit-frame-pointer -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o -lm | |
| mv -f .deps/gsnap_avx512-ladder.Tpo .deps/gsnap_avx512-ladder.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-genome128_consec.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm | |
| libtool: link: gcc-5 -DMAIN=1 -O3 -fomit-frame-pointer -o cpuid cpuid-cpuid.o -lm | |
| libtool: link: gcc-5 -O3 -fomit-frame-pointer -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o -lm | |
| libtool: link: gcc-5 -O3 -fomit-frame-pointer -o gmap gmap-cpuid.o gmap-gmap_select.o -lm | |
| mv -f .deps/gsnap_avx512-uint8table_rh.Tpo .deps/gsnap_avx512-uint8table_rh.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-genome128_consec.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-epu16-bitpack64-read.o cmetindex-epu16-bitpack64-access.o cmetindex-epu16-bitpack64-incr.o cmetindex-epu16-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-localdb.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm | |
| libtool: link: gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-getline.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lm -pthread | |
| libtool: link: gcc-5 -O3 -fomit-frame-pointer -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o -lm | |
| libtool: link: gcc-5 -O3 -fomit-frame-pointer -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o -lm | |
| libtool: link: gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-getline.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lm -pthread | |
| mv -f .deps/gsnap_avx512-samheader.Tpo .deps/gsnap_avx512-samheader.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-genome128_consec.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-epu16-bitpack64-read.o atoiindex-epu16-bitpack64-access.o atoiindex-epu16-bitpack64-incr.o atoiindex-epu16-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-localdb.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm | |
| libtool: link: gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm -pthread | |
| mv -f .deps/gsnap_avx512-uinttable_rh.Tpo .deps/gsnap_avx512-uinttable_rh.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-datadir.o trindex-getline.o trindex-getopt.o trindex-getopt1.o trindex-trindex.o -lz -lbz2 -lm | |
| mv -f .deps/gsnapl_avx512-bigendian.Tpo .deps/gsnapl_avx512-bigendian.Po | |
| mv -f .deps/gsnap_avx512-intersect.Tpo .deps/gsnap_avx512-intersect.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-semaphore.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-parserange.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-getline.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lm | |
| mv -f .deps/gsnap_avx512-genome128_consec.Tpo .deps/gsnap_avx512-genome128_consec.Po | |
| mv -f .deps/gsnap_avx512-request.Tpo .deps/gsnap_avx512-request.Po | |
| mv -f .deps/gmap_avx512-oligoindex_hr.Tpo .deps/gmap_avx512-oligoindex_hr.Po | |
| /bin/sh ../libtool --tag=CC --mode=link gcc-5 -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -o gmap.avx512 gmap_avx512-except.o gmap_avx512-assert.o gmap_avx512-mem.o gmap_avx512-intlist.o gmap_avx512-uintlist.o gmap_avx512-list.o gmap_avx512-littleendian.o gmap_avx512-bigendian.o gmap_avx512-univinterval.o gmap_avx512-interval.o gmap_avx512-stopwatch.o gmap_avx512-semaphore.o gmap_avx512-access.o gmap_avx512-filestring.o gmap_avx512-iit-read-univ.o gmap_avx512-iit-read.o gmap_avx512-md5.o gmap_avx512-bzip2.o gmap_avx512-fopen.o gmap_avx512-sequence.o gmap_avx512-reader.o gmap_avx512-genomicpos.o gmap_avx512-compress.o gmap_avx512-compress-write.o gmap_avx512-gbuffer.o gmap_avx512-genome.o gmap_avx512-popcount.o gmap_avx512-genome128_hr.o gmap_avx512-genome_sites.o gmap_avx512-genome-write.o gmap_avx512-bitpack64-read.o gmap_avx512-bitpack64-readtwo.o gmap_avx512-indexdb.o gmap_avx512-epu16-bitpack64-read.o gmap_avx512-epu16-bitpack64-readtwo.o gmap_avx512-oligo.o gmap_avx512-block.o gmap_avx512-chrom.o gmap_avx512-segmentpos.o gmap_avx512-chrnum.o gmap_avx512-uinttable_rh.o gmap_avx512-gregion.o gmap_avx512-match.o gmap_avx512-matchpool.o gmap_avx512-diagnostic.o gmap_avx512-stage1.o gmap_avx512-diag.o gmap_avx512-diagpool.o gmap_avx512-cmet.o gmap_avx512-atoi.o gmap_avx512-orderstat.o gmap_avx512-oligoindex_hr.o gmap_avx512-transcript.o gmap_avx512-intron.o gmap_avx512-maxent.o gmap_avx512-maxent_hr.o gmap_avx512-pair.o gmap_avx512-pairpool.o gmap_avx512-cellpool.o gmap_avx512-stage2.o gmap_avx512-doublelist.o gmap_avx512-smooth.o gmap_avx512-splicestringpool.o gmap_avx512-splicetrie_build.o gmap_avx512-splicetrie.o gmap_avx512-boyer-moore.o gmap_avx512-dynprog.o gmap_avx512-dynprog_simd.o gmap_avx512-dynprog_single.o gmap_avx512-dynprog_genome.o gmap_avx512-dynprog_cdna.o gmap_avx512-dynprog_end.o gmap_avx512-translation.o gmap_avx512-pbinom.o gmap_avx512-changepoint.o gmap_avx512-stage3.o gmap_avx512-request.o gmap_avx512-result.o gmap_avx512-output.o gmap_avx512-inbuffer.o gmap_avx512-samheader.o gmap_avx512-outbuffer.o gmap_avx512-chimera.o gmap_avx512-datadir.o gmap_avx512-parserange.o gmap_avx512-getline.o gmap_avx512-getopt.o gmap_avx512-getopt1.o gmap_avx512-gmap.o -lz -lbz2 -lm | |
| mv -f .deps/gsnap_avx512-getline.Tpo .deps/gsnap_avx512-getline.Po | |
| mv -f .deps/gsnap_avx512-concordance.Tpo .deps/gsnap_avx512-concordance.Po | |
| mv -f .deps/gsnapl_avx512-except.Tpo .deps/gsnapl_avx512-except.Po | |
| mv -f .deps/gsnap_avx512-bitpack64-access.Tpo .deps/gsnap_avx512-bitpack64-access.Po | |
| mv -f .deps/gsnap_avx512-terminal.Tpo .deps/gsnap_avx512-terminal.Po | |
| mv -f .deps/gsnap_avx512-knownsplicing.Tpo .deps/gsnap_avx512-knownsplicing.Po | |
| mv -f .deps/gsnap_avx512-maxent.Tpo .deps/gsnap_avx512-maxent.Po | |
| mv -f .deps/gsnapl_avx512-uint8list.Tpo .deps/gsnapl_avx512-uint8list.Po | |
| mv -f .deps/gsnapl_avx512-mem.Tpo .deps/gsnapl_avx512-mem.Po | |
| mv -f .deps/gsnapl_avx512-uintlist.Tpo .deps/gsnapl_avx512-uintlist.Po | |
| mv -f .deps/gsnap_avx512-indel.Tpo .deps/gsnap_avx512-indel.Po | |
| mv -f .deps/gsnap_avx512-resulthr.Tpo .deps/gsnap_avx512-resulthr.Po | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-semaphore.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-parserange.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-getline.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lm -pthread | |
| mv -f .deps/gsnapl_avx512-list.Tpo .deps/gsnapl_avx512-list.Po | |
| mv -f .deps/gsnap_avx512-inbuffer.Tpo .deps/gsnap_avx512-inbuffer.Po | |
| mv -f .deps/gsnapl_avx512-univinterval.Tpo .deps/gsnapl_avx512-univinterval.Po | |
| mv -f .deps/gsnapl_avx512-semaphore.Tpo .deps/gsnapl_avx512-semaphore.Po | |
| libtool: link: gcc-5 -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-genome128_consec.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-epu16-bitpack64-access.o gmapindex-epu16-bitpack64-incr.o gmapindex-epu16-bitpack64-write.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o -lz -lbz2 -lm -pthread | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-genome128_consec.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-epu16-bitpack64-read.o cmetindex-epu16-bitpack64-access.o cmetindex-epu16-bitpack64-incr.o cmetindex-epu16-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-localdb.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm -pthread | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm -pthread | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-datadir.o trindex-getline.o trindex-getopt.o trindex-getopt1.o trindex-trindex.o -lz -lbz2 -lm -pthread | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-genome128_consec.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm -pthread | |
| mv -f .deps/gsnapl_avx512-stopwatch.Tpo .deps/gsnapl_avx512-stopwatch.Po | |
| libtool: link: gcc-5 -pthread -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -DUTILITYP=1 -O3 -fomit-frame-pointer -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-genome128_consec.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-epu16-bitpack64-read.o atoiindex-epu16-bitpack64-access.o atoiindex-epu16-bitpack64-incr.o atoiindex-epu16-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-localdb.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm -pthread | |
| mv -f .deps/gsnapl_avx512-intlist.Tpo .deps/gsnapl_avx512-intlist.Po | |
| mv -f .deps/gsnap_avx512-localdb.Tpo .deps/gsnap_avx512-localdb.Po | |
| mv -f .deps/gsnapl_avx512-interval.Tpo .deps/gsnapl_avx512-interval.Po | |
| mv -f .deps/gsnap_avx512-output.Tpo .deps/gsnap_avx512-output.Po | |
| mv -f .deps/gsnapl_avx512-genomicpos.Tpo .deps/gsnapl_avx512-genomicpos.Po | |
| mv -f .deps/gsnap_avx512-samprint.Tpo .deps/gsnap_avx512-samprint.Po | |
| mv -f .deps/gsnap_avx512-simplepair.Tpo .deps/gsnap_avx512-simplepair.Po | |
| mv -f .deps/gsnap_avx512-parserange.Tpo .deps/gsnap_avx512-parserange.Po | |
| mv -f .deps/gsnapl_avx512-reader.Tpo .deps/gsnapl_avx512-reader.Po | |
| mv -f .deps/gsnap_avx512-genome.Tpo .deps/gsnap_avx512-genome.Po | |
| mv -f .deps/gsnap_avx512-outbuffer.Tpo .deps/gsnap_avx512-outbuffer.Po | |
| mv -f .deps/gsnapl_avx512-bzip2.Tpo .deps/gsnapl_avx512-bzip2.Po | |
| mv -f .deps/gsnap_avx512-indexdb.Tpo .deps/gsnap_avx512-indexdb.Po | |
| mv -f .deps/gsnap_avx512-distant-dna.Tpo .deps/gsnap_avx512-distant-dna.Po | |
| mv -f .deps/gsnap_avx512-datadir.Tpo .deps/gsnap_avx512-datadir.Po | |
| mv -f .deps/gsnap_avx512-shortread.Tpo .deps/gsnap_avx512-shortread.Po | |
| mv -f .deps/gmapl_avx512-pair.Tpo .deps/gmapl_avx512-pair.Po | |
| mv -f .deps/gsnapl_avx512-merge-diagonals-heap.Tpo .deps/gsnapl_avx512-merge-diagonals-heap.Po | |
| mv -f .deps/gsnapl_avx512-filestring.Tpo .deps/gsnapl_avx512-filestring.Po | |
| mv -f .deps/gsnap_avx512-segment-search.Tpo .deps/gsnap_avx512-segment-search.Po | |
| mv -f .deps/gsnapl_avx512-compress.Tpo .deps/gsnapl_avx512-compress.Po | |
| libtool: link: gcc-5 -pthread -DTARGET=\"x86_64-unknown-linux-gnu\" -DGMAPDB=\"/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -o gmap.avx512 gmap_avx512-except.o gmap_avx512-assert.o gmap_avx512-mem.o gmap_avx512-intlist.o gmap_avx512-uintlist.o gmap_avx512-list.o gmap_avx512-littleendian.o gmap_avx512-bigendian.o gmap_avx512-univinterval.o gmap_avx512-interval.o gmap_avx512-stopwatch.o gmap_avx512-semaphore.o gmap_avx512-access.o gmap_avx512-filestring.o gmap_avx512-iit-read-univ.o gmap_avx512-iit-read.o gmap_avx512-md5.o gmap_avx512-bzip2.o gmap_avx512-fopen.o gmap_avx512-sequence.o gmap_avx512-reader.o gmap_avx512-genomicpos.o gmap_avx512-compress.o gmap_avx512-compress-write.o gmap_avx512-gbuffer.o gmap_avx512-genome.o gmap_avx512-popcount.o gmap_avx512-genome128_hr.o gmap_avx512-genome_sites.o gmap_avx512-genome-write.o gmap_avx512-bitpack64-read.o gmap_avx512-bitpack64-readtwo.o gmap_avx512-indexdb.o gmap_avx512-epu16-bitpack64-read.o gmap_avx512-epu16-bitpack64-readtwo.o gmap_avx512-oligo.o gmap_avx512-block.o gmap_avx512-chrom.o gmap_avx512-segmentpos.o gmap_avx512-chrnum.o gmap_avx512-uinttable_rh.o gmap_avx512-gregion.o gmap_avx512-match.o gmap_avx512-matchpool.o gmap_avx512-diagnostic.o gmap_avx512-stage1.o gmap_avx512-diag.o gmap_avx512-diagpool.o gmap_avx512-cmet.o gmap_avx512-atoi.o gmap_avx512-orderstat.o gmap_avx512-oligoindex_hr.o gmap_avx512-transcript.o gmap_avx512-intron.o gmap_avx512-maxent.o gmap_avx512-maxent_hr.o gmap_avx512-pair.o gmap_avx512-pairpool.o gmap_avx512-cellpool.o gmap_avx512-stage2.o gmap_avx512-doublelist.o gmap_avx512-smooth.o gmap_avx512-splicestringpool.o gmap_avx512-splicetrie_build.o gmap_avx512-splicetrie.o gmap_avx512-boyer-moore.o gmap_avx512-dynprog.o gmap_avx512-dynprog_simd.o gmap_avx512-dynprog_single.o gmap_avx512-dynprog_genome.o gmap_avx512-dynprog_cdna.o gmap_avx512-dynprog_end.o gmap_avx512-translation.o gmap_avx512-pbinom.o gmap_avx512-changepoint.o gmap_avx512-stage3.o gmap_avx512-request.o gmap_avx512-result.o gmap_avx512-output.o gmap_avx512-inbuffer.o gmap_avx512-samheader.o gmap_avx512-outbuffer.o gmap_avx512-chimera.o gmap_avx512-datadir.o gmap_avx512-parserange.o gmap_avx512-getline.o gmap_avx512-getopt.o gmap_avx512-getopt1.o gmap_avx512-gmap.o -lz -lbz2 -lm -pthread | |
| mv -f .deps/gsnap_avx512-splice.Tpo .deps/gsnap_avx512-splice.Po | |
| mv -f .deps/gsnapl_avx512-transcriptome.Tpo .deps/gsnapl_avx512-transcriptome.Po | |
| mv -f .deps/gsnap_avx512-substring.Tpo .deps/gsnap_avx512-substring.Po | |
| mv -f .deps/gsnapl_avx512-method.Tpo .deps/gsnapl_avx512-method.Po | |
| mv -f .deps/gsnapl_avx512-epu16-bitpack64-readtwo.Tpo .deps/gsnapl_avx512-epu16-bitpack64-readtwo.Po | |
| mv -f .deps/gsnap_avx512-stage1hr.Tpo .deps/gsnap_avx512-stage1hr.Po | |
| mv -f .deps/gsnapl_avx512-epu16-bitpack64-read.Tpo .deps/gsnapl_avx512-epu16-bitpack64-read.Po | |
| mv -f .deps/gsnapl_avx512-fopen.Tpo .deps/gsnapl_avx512-fopen.Po | |
| mv -f .deps/gsnap_avx512-maxent_hr.Tpo .deps/gsnap_avx512-maxent_hr.Po | |
| mv -f .deps/gsnapl_avx512-access.Tpo .deps/gsnapl_avx512-access.Po | |
| mv -f .deps/gsnap_avx512-extension-search.Tpo .deps/gsnap_avx512-extension-search.Po | |
| mv -f .deps/gsnap_avx512-distant-rna.Tpo .deps/gsnap_avx512-distant-rna.Po | |
| merge-uint8.c: In function 'merge_4x4': | |
| mv -f .deps/gsnapl_avx512-chrnum.Tpo .deps/gsnapl_avx512-chrnum.Po | |
| merge-uint8.c:72:29: error: incompatible type for argument 1 of '_mm_max_epu64' | |
| *vMergedB = _mm_max_epu64(vTmp, vMax); | |
| ^ | |
| In file included from /projects/btl_scratch/sjackman/brew/Cellar/gcc/5.5.0_4/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/include/immintrin.h:53:0, | |
| from merge-uint8.c:15: | |
| /projects/btl_scratch/sjackman/brew/Cellar/gcc/5.5.0_4/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/include/avx512vlintrin.h:8024:1: note: expected '__m128i {aka __vector(2) long long int}' but argument is of type '__m256i {aka __vector(4) long long int}' | |
| _mm_max_epu64 (__m128i __A, __m128i __B) | |
| ^ | |
| merge-uint8.c:72:35: error: incompatible type for argument 2 of '_mm_max_epu64' | |
| *vMergedB = _mm_max_epu64(vTmp, vMax); | |
| ^ | |
| In file included from /projects/btl_scratch/sjackman/brew/Cellar/gcc/5.5.0_4/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/include/immintrin.h:53:0, | |
| from merge-uint8.c:15: | |
| /projects/btl_scratch/sjackman/brew/Cellar/gcc/5.5.0_4/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/include/avx512vlintrin.h:8024:1: note: expected '__m128i {aka __vector(2) long long int}' but argument is of type '__m256i {aka __vector(4) long long int}' | |
| _mm_max_epu64 (__m128i __A, __m128i __B) | |
| ^ | |
| make[2]: *** [gsnapl_avx512-merge-uint8.o] Error 1 | |
| make[2]: *** Waiting for unfinished jobs.... | |
| mv -f .deps/gsnapl_avx512-oligo.Tpo .deps/gsnapl_avx512-oligo.Po | |
| mv -f .deps/gsnapl_avx512-orderstat.Tpo .deps/gsnapl_avx512-orderstat.Po | |
| mv -f .deps/gsnapl_avx512-gbuffer.Tpo .deps/gsnapl_avx512-gbuffer.Po | |
| mv -f .deps/gsnapl_avx512-mapq.Tpo .deps/gsnapl_avx512-mapq.Po | |
| mv -f .deps/gsnapl_avx512-intlistpool.Tpo .deps/gsnapl_avx512-intlistpool.Po | |
| mv -f .deps/gsnapl_avx512-listpool.Tpo .deps/gsnapl_avx512-listpool.Po | |
| mv -f .deps/gsnapl_avx512-uint8listpool.Tpo .deps/gsnapl_avx512-uint8listpool.Po | |
| mv -f .deps/gsnapl_avx512-junction.Tpo .deps/gsnapl_avx512-junction.Po | |
| mv -f .deps/gsnapl_avx512-hitlistpool.Tpo .deps/gsnapl_avx512-hitlistpool.Po | |
| mv -f .deps/gmapl_avx512-gmap.Tpo .deps/gmapl_avx512-gmap.Po | |
| mv -f .deps/gsnapl_avx512-getopt.Tpo .deps/gsnapl_avx512-getopt.Po | |
| mv -f .deps/gsnapl_avx512-univdiag.Tpo .deps/gsnapl_avx512-univdiag.Po | |
| mv -f .deps/gsnap_avx512-path-solve.Tpo .deps/gsnap_avx512-path-solve.Po | |
| mv -f .deps/gsnapl_avx512-merge-uint4.Tpo .deps/gsnapl_avx512-merge-uint4.Po | |
| mv -f .deps/gsnapl_avx512-getopt1.Tpo .deps/gsnapl_avx512-getopt1.Po | |
| mv -f .deps/gsnap_avx512-iit-read.Tpo .deps/gsnap_avx512-iit-read.Po | |
| mv -f .deps/gsnapl_avx512-merge-diagonals-simd-uint8.Tpo .deps/gsnapl_avx512-merge-diagonals-simd-uint8.Po | |
| mv -f .deps/gsnapl_avx512-merge-diagonals-simd-uint4.Tpo .deps/gsnapl_avx512-merge-diagonals-simd-uint4.Po | |
| mv -f .deps/gsnap_avx512-genome128_hr.Tpo .deps/gsnap_avx512-genome128_hr.Po | |
| mv -f .deps/gsnapl_avx512-univdiagpool.Tpo .deps/gsnapl_avx512-univdiagpool.Po | |
| mv -f .deps/gsnapl_avx512-intron.Tpo .deps/gsnapl_avx512-intron.Po | |
| mv -f .deps/gsnapl_avx512-sedgesort.Tpo .deps/gsnapl_avx512-sedgesort.Po | |
| mv -f .deps/gsnapl_avx512-request.Tpo .deps/gsnapl_avx512-request.Po | |
| mv -f .deps/gsnapl_avx512-getline.Tpo .deps/gsnapl_avx512-getline.Po | |
| mv -f .deps/gsnapl_avx512-transcript.Tpo .deps/gsnapl_avx512-transcript.Po | |
| mv -f .deps/gsnapl_avx512-uint8table_rh.Tpo .deps/gsnapl_avx512-uint8table_rh.Po | |
| mv -f .deps/gsnapl_avx512-samheader.Tpo .deps/gsnapl_avx512-samheader.Po | |
| mv -f .deps/gsnapl_avx512-terminal.Tpo .deps/gsnapl_avx512-terminal.Po | |
| mv -f .deps/gsnapl_avx512-resulthr.Tpo .deps/gsnapl_avx512-resulthr.Po | |
| mv -f .deps/gsnapl_avx512-inbuffer.Tpo .deps/gsnapl_avx512-inbuffer.Po | |
| mv -f .deps/gsnapl_avx512-cigar.Tpo .deps/gsnapl_avx512-cigar.Po | |
| mv -f .deps/gsnapl_avx512-intersect.Tpo .deps/gsnapl_avx512-intersect.Po | |
| mv -f .deps/gsnapl_avx512-ladder.Tpo .deps/gsnapl_avx512-ladder.Po | |
| mv -f .deps/gsnapl_avx512-knownsplicing.Tpo .deps/gsnapl_avx512-knownsplicing.Po | |
| mv -f .deps/gsnapl_avx512-iit-read-univ.Tpo .deps/gsnapl_avx512-iit-read-univ.Po | |
| mv -f .deps/gsnapl_avx512-output.Tpo .deps/gsnapl_avx512-output.Po | |
| mv -f .deps/gsnapl_avx512-intersect-large.Tpo .deps/gsnapl_avx512-intersect-large.Po | |
| mv -f .deps/gsnapl_avx512-parserange.Tpo .deps/gsnapl_avx512-parserange.Po | |
| mv -f .deps/gsnapl_avx512-datadir.Tpo .deps/gsnapl_avx512-datadir.Po | |
| mv -f .deps/gsnapl_avx512-outbuffer.Tpo .deps/gsnapl_avx512-outbuffer.Po | |
| mv -f .deps/gsnapl_avx512-indel.Tpo .deps/gsnapl_avx512-indel.Po | |
| mv -f .deps/gsnapl_avx512-distant-dna.Tpo .deps/gsnapl_avx512-distant-dna.Po | |
| mv -f .deps/gsnapl_avx512-bitpack64-read.Tpo .deps/gsnapl_avx512-bitpack64-read.Po | |
| mv -f .deps/gmapl_avx512-oligoindex_hr.Tpo .deps/gmapl_avx512-oligoindex_hr.Po | |
| mv -f .deps/gsnapl_avx512-indexdb.Tpo .deps/gsnapl_avx512-indexdb.Po | |
| mv -f .deps/gsnapl_avx512-concordance.Tpo .deps/gsnapl_avx512-concordance.Po | |
| mv -f .deps/gsnapl_avx512-genome128_consec.Tpo .deps/gsnapl_avx512-genome128_consec.Po | |
| mv -f .deps/gsnapl_avx512-genome_sites.Tpo .deps/gsnapl_avx512-genome_sites.Po | |
| mv -f .deps/gsnapl_avx512-localdb.Tpo .deps/gsnapl_avx512-localdb.Po | |
| mv -f .deps/gsnap_avx512-gsnap.Tpo .deps/gsnap_avx512-gsnap.Po | |
| mv -f .deps/gsnapl_avx512-bitpack64-readtwo.Tpo .deps/gsnapl_avx512-bitpack64-readtwo.Po | |
| mv -f .deps/gsnapl_avx512-segment-search.Tpo .deps/gsnapl_avx512-segment-search.Po | |
| mv -f .deps/gsnapl_avx512-simplepair.Tpo .deps/gsnapl_avx512-simplepair.Po | |
| mv -f .deps/gsnapl_avx512-bitpack64-access.Tpo .deps/gsnapl_avx512-bitpack64-access.Po | |
| mv -f .deps/gsnapl_avx512-extension-search.Tpo .deps/gsnapl_avx512-extension-search.Po | |
| mv -f .deps/gsnapl_avx512-stage1hr.Tpo .deps/gsnapl_avx512-stage1hr.Po | |
| mv -f .deps/gsnapl_avx512-maxent.Tpo .deps/gsnapl_avx512-maxent.Po | |
| mv -f .deps/gsnapl_avx512-distant-rna.Tpo .deps/gsnapl_avx512-distant-rna.Po | |
| mv -f .deps/gsnapl_avx512-samprint.Tpo .deps/gsnapl_avx512-samprint.Po | |
| mv -f .deps/gsnapl_avx512-splice.Tpo .deps/gsnapl_avx512-splice.Po | |
| mv -f .deps/gmapl_avx512-stage3.Tpo .deps/gmapl_avx512-stage3.Po | |
| mv -f .deps/gsnapl_avx512-shortread.Tpo .deps/gsnapl_avx512-shortread.Po | |
| mv -f .deps/gsnapl_avx512-genome.Tpo .deps/gsnapl_avx512-genome.Po | |
| mv -f .deps/gsnapl_avx512-path-solve.Tpo .deps/gsnapl_avx512-path-solve.Po | |
| mv -f .deps/gsnapl_avx512-gsnap.Tpo .deps/gsnapl_avx512-gsnap.Po | |
| mv -f .deps/gsnapl_avx512-substring.Tpo .deps/gsnapl_avx512-substring.Po | |
| mv -f .deps/gsnap_avx512-kmer-search.Tpo .deps/gsnap_avx512-kmer-search.Po | |
| mv -f .deps/gsnapl_avx512-maxent_hr.Tpo .deps/gsnapl_avx512-maxent_hr.Po | |
| mv -f .deps/gsnap_avx512-stage3hr.Tpo .deps/gsnap_avx512-stage3hr.Po | |
| mv -f .deps/gsnapl_avx512-genome128_hr.Tpo .deps/gsnapl_avx512-genome128_hr.Po | |
| mv -f .deps/gsnapl_avx512-iit-read.Tpo .deps/gsnapl_avx512-iit-read.Po | |
| mv -f .deps/gsnapl_avx512-kmer-search.Tpo .deps/gsnapl_avx512-kmer-search.Po | |
| mv -f .deps/gsnapl_avx512-stage3hr.Tpo .deps/gsnapl_avx512-stage3hr.Po | |
| make[2]: Leaving directory `/var/tmp/sjackman/gmap-gsnap-20190424-90610-ufa8hn/gmap-2019-03-15/src' | |
| make[1]: *** [all] Error 2 | |
| make[1]: Leaving directory `/var/tmp/sjackman/gmap-gsnap-20190424-90610-ufa8hn/gmap-2019-03-15/src' | |
| make: *** [all-recursive] Error 1 | |
| HOMEBREW_VERSION: 2.1.0-30-g1c65591 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 1c655916fe9a9fd46b73fc23f5f54d15d934b8f9 | |
| Last commit: 2 weeks ago | |
| Core tap ORIGIN: https://github.com/Homebrew/linuxbrew-core | |
| Core tap HEAD: effaf8b98a5c7388cd6e3fdc3d51b896fc9a6843 | |
| Core tap last commit: 12 days ago | |
| HOMEBREW_PREFIX: /projects/btl_scratch/sjackman/brew | |
| HOMEBREW_REPOSITORY: /projects/btl_scratch/sjackman/brew/Homebrew | |
| HOMEBREW_CELLAR: /projects/btl_scratch/sjackman/brew/Cellar | |
| HOMEBREW_CACHE: /gsc/btl/linuxbrew/var/cache/homebrew | |
| HOMEBREW_TEMP: /var/tmp/sjackman | |
| CPU: 144-core 64-bit skylake | |
| Homebrew Ruby: 2.3.7 => /projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.7/bin/ruby | |
| Clang: N/A | |
| Git: 2.19.0 => /gsc/btl/linuxbrew/bin/git | |
| Curl: 7.64.1 => /projects/btl_scratch/sjackman/brew/opt/curl/bin/curl | |
| Kernel: Linux 3.10.0-693.5.2.el7.x86_64 x86_64 GNU/Linux | |
| OS: CentOS Linux release 7.4.1708 (Core) (Core) | |
| Host glibc: 2.17 | |
| /usr/bin/gcc: 4.8.5 | |
| glibc: 2.23 | |
| gcc: 5.5.0_4 | |
| xorg: N/A | |
| HOMEBREW_CC: gcc-5 | |
| HOMEBREW_CXX: g++-5 | |
| MAKEFLAGS: -j144 | |
| CMAKE_PREFIX_PATH: /projects/btl_scratch/sjackman/brew | |
| PKG_CONFIG_PATH: /projects/btl_scratch/sjackman/brew/opt/xz/lib/pkgconfig:/projects/btl_scratch/sjackman/brew/opt/zlib/lib/pkgconfig:/projects/btl_scratch/sjackman/brew/opt/openssl/lib/pkgconfig:/projects/btl_scratch/sjackman/brew/opt/curl/lib/pkgconfig:/projects/btl_scratch/sjackman/brew/opt/htslib/lib/pkgconfig:/projects/btl_scratch/sjackman/brew/opt/ncurses/lib/pkgconfig | |
| HOMEBREW_GIT: /gsc/btl/linuxbrew/bin/git | |
| ACLOCAL_PATH: /projects/btl_scratch/sjackman/brew/share/aclocal | |
| PATH: /projects/btl_scratch/sjackman/brew/Homebrew/Library/Homebrew/shims/linux/super:/projects/btl_scratch/sjackman/brew/opt/xz/bin:/projects/btl_scratch/sjackman/brew/opt/bzip2/bin:/projects/btl_scratch/sjackman/brew/opt/openssl/bin:/projects/btl_scratch/sjackman/brew/opt/curl/bin:/projects/btl_scratch/sjackman/brew/opt/htslib/bin:/projects/btl_scratch/sjackman/brew/opt/ncurses/bin:/projects/btl_scratch/sjackman/brew/opt/samtools/bin:/projects/btl_scratch/sjackman/brew/opt/binutils/bin:/usr/bin:/bin:/usr/sbin:/sbin:/projects/btl_scratch/sjackman/brew/opt/gcc/bin |
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| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmapl-cpuid.o -MD -MP -MF .deps/gmapl-cpuid.Tpo -c -o gmapl-cpuid.o cpuid.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gmapl-cpuid.o -MD -MP -MF .deps/gmapl-cpuid.Tpo -c -o gmapl-cpuid.o cpuid.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmap-cpuid.o -MD -MP -MF .deps/gmap-cpuid.Tpo -c -o gmap-cpuid.o cpuid.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gmap-cpuid.o -MD -MP -MF .deps/gmap-cpuid.Tpo -c -o gmap-cpuid.o cpuid.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmapl-gmapl_select.o -MD -MP -MF .deps/gmapl-gmapl_select.Tpo -c -o gmapl-gmapl_select.o gmapl_select.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gmapl-gmapl_select.o -MD -MP -MF .deps/gmapl-gmapl_select.Tpo -c -o gmapl-gmapl_select.o gmapl_select.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gmap-gmap_select.o -MD -MP -MF .deps/gmap-gmap_select.Tpo -c -o gmap-gmap_select.o gmap_select.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gmap-gmap_select.o -MD -MP -MF .deps/gmap-gmap_select.Tpo -c -o gmap-gmap_select.o gmap_select.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -DMAIN=1 -O3 -fomit-frame-pointer -MT cpuid-cpuid.o -MD -MP -MF .deps/cpuid-cpuid.Tpo -c -o cpuid-cpuid.o cpuid.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -DMAIN=1 -fomit-frame-pointer -MT cpuid-cpuid.o -MD -MP -MF .deps/cpuid-cpuid.Tpo -c -o cpuid-cpuid.o cpuid.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o iit-write-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o iit-write-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-semaphore.o -MD -MP -MF .deps/gmapindex-semaphore.Tpo -c -o gmapindex-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-semaphore.o -MD -MP -MF .deps/gmapindex-semaphore.Tpo -c -o gmapindex-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-semaphore.o -MD -MP -MF .deps/get_genome-semaphore.Tpo -c -o get_genome-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-semaphore.o -MD -MP -MF .deps/get_genome-semaphore.Tpo -c -o get_genome-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-localdb-write.o -MD -MP -MF .deps/gmapindex-localdb-write.Tpo -c -o gmapindex-localdb-write.o localdb-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-localdb-write.o -MD -MP -MF .deps/gmapindex-localdb-write.Tpo -c -o gmapindex-localdb-write.o localdb-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o chrom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o chrom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-fopen.o -MD -MP -MF .deps/gmapindex-fopen.Tpo -c -o gmapindex-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-fopen.o -MD -MP -MF .deps/gmapindex-fopen.Tpo -c -o gmapindex-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o genome-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o genome-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c -o gmapindex-bitpack64-write.o bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c -o gmapindex-bitpack64-write.o bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-doublelist.o -MD -MP -MF .deps/iit_store-doublelist.Tpo -c -o iit_store-doublelist.o doublelist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-doublelist.o -MD -MP -MF .deps/iit_store-doublelist.Tpo -c -o iit_store-doublelist.o doublelist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit-write-univ.o -MD -MP -MF .deps/iit_store-iit-write-univ.Tpo -c -o iit_store-iit-write-univ.o iit-write-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-iit-write-univ.o -MD -MP -MF .deps/iit_store-iit-write-univ.Tpo -c -o iit_store-iit-write-univ.o iit-write-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-tableint.o -MD -MP -MF .deps/iit_store-tableint.Tpo -c -o iit_store-tableint.o tableint.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-tableint.o -MD -MP -MF .deps/iit_store-tableint.Tpo -c -o iit_store-tableint.o tableint.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o chrnum.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o chrnum.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-mem.o -MD -MP -MF .deps/iit_store-mem.Tpo -c -o iit_store-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-mem.o -MD -MP -MF .deps/iit_store-mem.Tpo -c -o iit_store-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-parserange.o -MD -MP -MF .deps/gmapindex-parserange.Tpo -c -o gmapindex-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-parserange.o -MD -MP -MF .deps/gmapindex-parserange.Tpo -c -o gmapindex-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-access.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-access.Tpo -c -o gmapindex-epu16-bitpack64-access.o epu16-bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-access.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-access.Tpo -c -o gmapindex-epu16-bitpack64-access.o epu16-bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-bigendian.o -MD -MP -MF .deps/iit_store-bigendian.Tpo -c -o iit_store-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-bigendian.o -MD -MP -MF .deps/iit_store-bigendian.Tpo -c -o iit_store-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-getline.o -MD -MP -MF .deps/get_genome-getline.Tpo -c -o get_genome-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-getline.o -MD -MP -MF .deps/get_genome-getline.Tpo -c -o get_genome-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-univinterval.o -MD -MP -MF .deps/iit_store-univinterval.Tpo -c -o iit_store-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-univinterval.o -MD -MP -MF .deps/iit_store-univinterval.Tpo -c -o iit_store-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getline.o -MD -MP -MF .deps/iit_store-getline.Tpo -c -o iit_store-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-getline.o -MD -MP -MF .deps/iit_store-getline.Tpo -c -o iit_store-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-except.o -MD -MP -MF .deps/iit_store-except.Tpo -c -o iit_store-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-except.o -MD -MP -MF .deps/iit_store-except.Tpo -c -o iit_store-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-getline.o -MD -MP -MF .deps/gmapindex-getline.Tpo -c -o gmapindex-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-getline.o -MD -MP -MF .deps/gmapindex-getline.Tpo -c -o gmapindex-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o compress-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o compress-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-semaphore.o -MD -MP -MF .deps/iit_store-semaphore.Tpo -c -o iit_store-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-semaphore.o -MD -MP -MF .deps/iit_store-semaphore.Tpo -c -o iit_store-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-intlist.o -MD -MP -MF .deps/iit_store-intlist.Tpo -c -o iit_store-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-intlist.o -MD -MP -MF .deps/iit_store-intlist.Tpo -c -o iit_store-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit_store.o -MD -MP -MF .deps/iit_store-iit_store.Tpo -c -o iit_store-iit_store.o iit_store.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-iit_store.o -MD -MP -MF .deps/iit_store-iit_store.Tpo -c -o iit_store-iit_store.o iit_store.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-stopwatch.o -MD -MP -MF .deps/iit_store-stopwatch.Tpo -c -o iit_store-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-stopwatch.o -MD -MP -MF .deps/iit_store-stopwatch.Tpo -c -o iit_store-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-table.o -MD -MP -MF .deps/iit_store-table.Tpo -c -o iit_store-table.o table.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-table.o -MD -MP -MF .deps/iit_store-table.Tpo -c -o iit_store-table.o table.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-list.o -MD -MP -MF .deps/iit_store-list.Tpo -c -o iit_store-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-list.o -MD -MP -MF .deps/iit_store-list.Tpo -c -o iit_store-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-assert.o -MD -MP -MF .deps/iit_store-assert.Tpo -c -o iit_store-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-assert.o -MD -MP -MF .deps/iit_store-assert.Tpo -c -o iit_store-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-littleendian.o -MD -MP -MF .deps/iit_get-littleendian.Tpo -c -o iit_get-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-littleendian.o -MD -MP -MF .deps/iit_get-littleendian.Tpo -c -o iit_get-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-iit-write.o -MD -MP -MF .deps/iit_store-iit-write.Tpo -c -o iit_store-iit-write.o iit-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-iit-write.o -MD -MP -MF .deps/iit_store-iit-write.Tpo -c -o iit_store-iit-write.o iit-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-interval.o -MD -MP -MF .deps/iit_get-interval.Tpo -c -o iit_get-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-interval.o -MD -MP -MF .deps/iit_get-interval.Tpo -c -o iit_get-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-interval.o -MD -MP -MF .deps/iit_store-interval.Tpo -c -o iit_store-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-interval.o -MD -MP -MF .deps/iit_store-interval.Tpo -c -o iit_store-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-chrom.o -MD -MP -MF .deps/iit_store-chrom.Tpo -c -o iit_store-chrom.o chrom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-chrom.o -MD -MP -MF .deps/iit_store-chrom.Tpo -c -o iit_store-chrom.o chrom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-fopen.o -MD -MP -MF .deps/get_genome-fopen.Tpo -c -o get_genome-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-fopen.o -MD -MP -MF .deps/get_genome-fopen.Tpo -c -o get_genome-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-littleendian.o -MD -MP -MF .deps/iit_store-littleendian.Tpo -c -o iit_store-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-littleendian.o -MD -MP -MF .deps/iit_store-littleendian.Tpo -c -o iit_store-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-mem.o -MD -MP -MF .deps/iit_get-mem.Tpo -c -o iit_get-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-mem.o -MD -MP -MF .deps/iit_get-mem.Tpo -c -o iit_get-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-segmentpos.o -MD -MP -MF .deps/gmapindex-segmentpos.Tpo -c -o gmapindex-segmentpos.o segmentpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-segmentpos.o -MD -MP -MF .deps/gmapindex-segmentpos.Tpo -c -o gmapindex-segmentpos.o segmentpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getline.o -MD -MP -MF .deps/iit_get-getline.Tpo -c -o iit_get-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-getline.o -MD -MP -MF .deps/iit_get-getline.Tpo -c -o iit_get-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-list.o -MD -MP -MF .deps/iit_get-list.Tpo -c -o iit_get-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-list.o -MD -MP -MF .deps/iit_get-list.Tpo -c -o iit_get-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-bitpack64-incr.Tpo -c -o gmapindex-bitpack64-incr.o bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-bitpack64-incr.Tpo -c -o gmapindex-bitpack64-incr.o bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-assert.o -MD -MP -MF .deps/iit_get-assert.Tpo -c -o iit_get-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-assert.o -MD -MP -MF .deps/iit_get-assert.Tpo -c -o iit_get-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getopt.o -MD -MP -MF .deps/iit_store-getopt.Tpo -c -o iit_store-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-getopt.o -MD -MP -MF .deps/iit_store-getopt.Tpo -c -o iit_store-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-uintlist.o -MD -MP -MF .deps/iit_store-uintlist.Tpo -c -o iit_store-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-uintlist.o -MD -MP -MF .deps/iit_store-uintlist.Tpo -c -o iit_store-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableint.o -MD -MP -MF .deps/gmapindex-tableint.Tpo -c -o gmapindex-tableint.o tableint.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-tableint.o -MD -MP -MF .deps/gmapindex-tableint.Tpo -c -o gmapindex-tableint.o tableint.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-write.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-write.Tpo -c -o gmapindex-epu16-bitpack64-write.o epu16-bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-write.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-write.Tpo -c -o gmapindex-epu16-bitpack64-write.o epu16-bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableuint8.o -MD -MP -MF .deps/gmapindex-tableuint8.Tpo -c -o gmapindex-tableuint8.o tableuint8.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-tableuint8.o -MD -MP -MF .deps/gmapindex-tableuint8.Tpo -c -o gmapindex-tableuint8.o tableuint8.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o popcount.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o popcount.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-stopwatch.o -MD -MP -MF .deps/iit_get-stopwatch.Tpo -c -o iit_get-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-stopwatch.o -MD -MP -MF .deps/iit_get-stopwatch.Tpo -c -o iit_get-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-uint8list.o -MD -MP -MF .deps/gmapindex-uint8list.Tpo -c -o gmapindex-uint8list.o uint8list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-uint8list.o -MD -MP -MF .deps/gmapindex-uint8list.Tpo -c -o gmapindex-uint8list.o uint8list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o genome128_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o genome128_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-uintlist.o -MD -MP -MF .deps/iit_get-uintlist.Tpo -c -o iit_get-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-uintlist.o -MD -MP -MF .deps/iit_get-uintlist.Tpo -c -o iit_get-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-indexdb-write.o -MD -MP -MF .deps/gmapindex-indexdb-write.Tpo -c -o gmapindex-indexdb-write.o indexdb-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-indexdb-write.o -MD -MP -MF .deps/gmapindex-indexdb-write.Tpo -c -o gmapindex-indexdb-write.o indexdb-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-incr.Tpo -c -o gmapindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-epu16-bitpack64-incr.Tpo -c -o gmapindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-except.o -MD -MP -MF .deps/iit_get-except.Tpo -c -o iit_get-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-except.o -MD -MP -MF .deps/iit_get-except.Tpo -c -o iit_get-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-gmapindex.o -MD -MP -MF .deps/gmapindex-gmapindex.Tpo -c -o gmapindex-gmapindex.o gmapindex.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-gmapindex.o -MD -MP -MF .deps/gmapindex-gmapindex.Tpo -c -o gmapindex-gmapindex.o gmapindex.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-parserange.o -MD -MP -MF .deps/iit_get-parserange.Tpo -c -o iit_get-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-parserange.o -MD -MP -MF .deps/iit_get-parserange.Tpo -c -o iit_get-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-getopt1.o -MD -MP -MF .deps/iit_store-getopt1.Tpo -c -o iit_store-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-getopt1.o -MD -MP -MF .deps/iit_store-getopt1.Tpo -c -o iit_store-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit-read.o -MD -MP -MF .deps/iit_get-iit-read.Tpo -c -o iit_get-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-iit-read.o -MD -MP -MF .deps/iit_get-iit-read.Tpo -c -o iit_get-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-intlist.o -MD -MP -MF .deps/iit_get-intlist.Tpo -c -o iit_get-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-intlist.o -MD -MP -MF .deps/iit_get-intlist.Tpo -c -o iit_get-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-table.o -MD -MP -MF .deps/gmapindex-table.Tpo -c -o gmapindex-table.o table.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-table.o -MD -MP -MF .deps/gmapindex-table.Tpo -c -o gmapindex-table.o table.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o get-genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o get-genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit-read-univ.o -MD -MP -MF .deps/iit_get-iit-read-univ.Tpo -c -o iit_get-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-iit-read-univ.o -MD -MP -MF .deps/iit_get-iit-read-univ.Tpo -c -o iit_get-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getopt.o -MD -MP -MF .deps/iit_get-getopt.Tpo -c -o iit_get-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-getopt.o -MD -MP -MF .deps/iit_get-getopt.Tpo -c -o iit_get-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-iit_get.o -MD -MP -MF .deps/iit_get-iit_get.Tpo -c -o iit_get-iit_get.o iit_get.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-iit_get.o -MD -MP -MF .deps/iit_get-iit_get.Tpo -c -o iit_get-iit_get.o iit_get.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-tableuint.o -MD -MP -MF .deps/gmapindex-tableuint.Tpo -c -o gmapindex-tableuint.o tableuint.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-tableuint.o -MD -MP -MF .deps/gmapindex-tableuint.Tpo -c -o gmapindex-tableuint.o tableuint.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-intlist.o -MD -MP -MF .deps/iit_dump-intlist.Tpo -c -o iit_dump-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-intlist.o -MD -MP -MF .deps/iit_dump-intlist.Tpo -c -o iit_dump-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-filestring.o -MD -MP -MF .deps/iit_get-filestring.Tpo -c -o iit_get-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-filestring.o -MD -MP -MF .deps/iit_get-filestring.Tpo -c -o iit_get-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-bigendian.o -MD -MP -MF .deps/iit_dump-bigendian.Tpo -c -o iit_dump-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-bigendian.o -MD -MP -MF .deps/iit_dump-bigendian.Tpo -c -o iit_dump-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-access.o -MD -MP -MF .deps/iit_dump-access.Tpo -c -o iit_dump-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-access.o -MD -MP -MF .deps/iit_dump-access.Tpo -c -o iit_dump-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-semaphore.o -MD -MP -MF .deps/iit_get-semaphore.Tpo -c -o iit_get-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-semaphore.o -MD -MP -MF .deps/iit_get-semaphore.Tpo -c -o iit_get-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_store-access.o -MD -MP -MF .deps/iit_store-access.Tpo -c -o iit_store-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_store-access.o -MD -MP -MF .deps/iit_store-access.Tpo -c -o iit_store-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-filestring.o -MD -MP -MF .deps/iit_dump-filestring.Tpo -c -o iit_dump-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-filestring.o -MD -MP -MF .deps/iit_dump-filestring.Tpo -c -o iit_dump-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-stopwatch.o -MD -MP -MF .deps/iit_dump-stopwatch.Tpo -c -o iit_dump-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-stopwatch.o -MD -MP -MF .deps/iit_dump-stopwatch.Tpo -c -o iit_dump-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-univinterval.o -MD -MP -MF .deps/iit_get-univinterval.Tpo -c -o iit_get-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-univinterval.o -MD -MP -MF .deps/iit_get-univinterval.Tpo -c -o iit_get-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-access.o -MD -MP -MF .deps/iit_get-access.Tpo -c -o iit_get-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-access.o -MD -MP -MF .deps/iit_get-access.Tpo -c -o iit_get-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-uintlist.o -MD -MP -MF .deps/iit_dump-uintlist.Tpo -c -o iit_dump-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-uintlist.o -MD -MP -MF .deps/iit_dump-uintlist.Tpo -c -o iit_dump-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-littleendian.o -MD -MP -MF .deps/iit_dump-littleendian.Tpo -c -o iit_dump-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-littleendian.o -MD -MP -MF .deps/iit_dump-littleendian.Tpo -c -o iit_dump-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-chrom.o -MD -MP -MF .deps/gmapindex-chrom.Tpo -c -o gmapindex-chrom.o chrom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-chrom.o -MD -MP -MF .deps/gmapindex-chrom.Tpo -c -o gmapindex-chrom.o chrom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-bigendian.o -MD -MP -MF .deps/iit_get-bigendian.Tpo -c -o iit_get-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-bigendian.o -MD -MP -MF .deps/iit_get-bigendian.Tpo -c -o iit_get-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-list.o -MD -MP -MF .deps/iit_dump-list.Tpo -c -o iit_dump-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-list.o -MD -MP -MF .deps/iit_dump-list.Tpo -c -o iit_dump-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-indexdb.o -MD -MP -MF .deps/gmapindex-indexdb.Tpo -c -o gmapindex-indexdb.o indexdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-indexdb.o -MD -MP -MF .deps/gmapindex-indexdb.Tpo -c -o gmapindex-indexdb.o indexdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT gmapindex-genome128_consec.o -MD -MP -MF .deps/gmapindex-genome128_consec.Tpo -c -o gmapindex-genome128_consec.o genome128_consec.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT gmapindex-genome128_consec.o -MD -MP -MF .deps/gmapindex-genome128_consec.Tpo -c -o gmapindex-genome128_consec.o genome128_consec.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit-read-univ.o -MD -MP -MF .deps/iit_dump-iit-read-univ.Tpo -c -o iit_dump-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-iit-read-univ.o -MD -MP -MF .deps/iit_dump-iit-read-univ.Tpo -c -o iit_dump-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-except.o -MD -MP -MF .deps/iit_dump-except.Tpo -c -o iit_dump-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-except.o -MD -MP -MF .deps/iit_dump-except.Tpo -c -o iit_dump-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-semaphore.o -MD -MP -MF .deps/iit_dump-semaphore.Tpo -c -o iit_dump-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-semaphore.o -MD -MP -MF .deps/iit_dump-semaphore.Tpo -c -o iit_dump-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-univinterval.o -MD -MP -MF .deps/iit_dump-univinterval.Tpo -c -o iit_dump-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-univinterval.o -MD -MP -MF .deps/iit_dump-univinterval.Tpo -c -o iit_dump-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_get-getopt1.o -MD -MP -MF .deps/iit_get-getopt1.Tpo -c -o iit_get-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_get-getopt1.o -MD -MP -MF .deps/iit_get-getopt1.Tpo -c -o iit_get-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-assert.o -MD -MP -MF .deps/iit_dump-assert.Tpo -c -o iit_dump-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-assert.o -MD -MP -MF .deps/iit_dump-assert.Tpo -c -o iit_dump-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-mem.o -MD -MP -MF .deps/iit_dump-mem.Tpo -c -o iit_dump-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-mem.o -MD -MP -MF .deps/iit_dump-mem.Tpo -c -o iit_dump-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-interval.o -MD -MP -MF .deps/iit_dump-interval.Tpo -c -o iit_dump-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-interval.o -MD -MP -MF .deps/iit_dump-interval.Tpo -c -o iit_dump-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit-read.o -MD -MP -MF .deps/iit_dump-iit-read.Tpo -c -o iit_dump-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-iit-read.o -MD -MP -MF .deps/iit_dump-iit-read.Tpo -c -o iit_dump-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-getopt.o -MD -MP -MF .deps/iit_dump-getopt.Tpo -c -o iit_dump-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-getopt.o -MD -MP -MF .deps/iit_dump-getopt.Tpo -c -o iit_dump-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-getopt1.o -MD -MP -MF .deps/iit_dump-getopt1.Tpo -c -o iit_dump-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-getopt1.o -MD -MP -MF .deps/iit_dump-getopt1.Tpo -c -o iit_dump-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-iit_dump.o -MD -MP -MF .deps/iit_dump-iit_dump.Tpo -c -o iit_dump-iit_dump.o iit_dump.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-iit_dump.o -MD -MP -MF .deps/iit_dump-iit_dump.Tpo -c -o iit_dump-iit_dump.o iit_dump.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -O3 -fomit-frame-pointer -MT iit_dump-parserange.o -MD -MP -MF .deps/iit_dump-parserange.Tpo -c -o iit_dump-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -fomit-frame-pointer -MT iit_dump-parserange.o -MD -MP -MF .deps/iit_dump-parserange.Tpo -c -o iit_dump-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnap-cpuid.o -MD -MP -MF .deps/gsnap-cpuid.Tpo -c -o gsnap-cpuid.o cpuid.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gsnap-cpuid.o -MD -MP -MF .deps/gsnap-cpuid.Tpo -c -o gsnap-cpuid.o cpuid.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnapl-gsnapl_select.o -MD -MP -MF .deps/gsnapl-gsnapl_select.Tpo -c -o gsnapl-gsnapl_select.o gsnapl_select.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gsnapl-gsnapl_select.o -MD -MP -MF .deps/gsnapl-gsnapl_select.Tpo -c -o gsnapl-gsnapl_select.o gsnapl_select.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnap-gsnap_select.o -MD -MP -MF .deps/gsnap-gsnap_select.Tpo -c -o gsnap-gsnap_select.o gsnap_select.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gsnap-gsnap_select.o -MD -MP -MF .deps/gsnap-gsnap_select.Tpo -c -o gsnap-gsnap_select.o gsnap_select.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -MT gsnapl-cpuid.o -MD -MP -MF .deps/gsnapl-cpuid.Tpo -c -o gsnapl-cpuid.o cpuid.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -fomit-frame-pointer -MT gsnapl-cpuid.o -MD -MP -MF .deps/gsnapl-cpuid.Tpo -c -o gsnapl-cpuid.o cpuid.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-stopwatch.o -MD -MP -MF .deps/snpindex-stopwatch.Tpo -c -o snpindex-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-stopwatch.o -MD -MP -MF .deps/snpindex-stopwatch.Tpo -c -o snpindex-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-except.o -MD -MP -MF .deps/snpindex-except.Tpo -c -o snpindex-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-except.o -MD -MP -MF .deps/snpindex-except.Tpo -c -o snpindex-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bigendian.o -MD -MP -MF .deps/snpindex-bigendian.Tpo -c -o snpindex-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bigendian.o -MD -MP -MF .deps/snpindex-bigendian.Tpo -c -o snpindex-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-univinterval.o -MD -MP -MF .deps/snpindex-univinterval.Tpo -c -o snpindex-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-univinterval.o -MD -MP -MF .deps/snpindex-univinterval.Tpo -c -o snpindex-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-intlist.o -MD -MP -MF .deps/snpindex-intlist.Tpo -c -o snpindex-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-intlist.o -MD -MP -MF .deps/snpindex-intlist.Tpo -c -o snpindex-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-littleendian.o -MD -MP -MF .deps/snpindex-littleendian.Tpo -c -o snpindex-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-littleendian.o -MD -MP -MF .deps/snpindex-littleendian.Tpo -c -o snpindex-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-list.o -MD -MP -MF .deps/snpindex-list.Tpo -c -o snpindex-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-list.o -MD -MP -MF .deps/snpindex-list.Tpo -c -o snpindex-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-mem.o -MD -MP -MF .deps/snpindex-mem.Tpo -c -o snpindex-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-mem.o -MD -MP -MF .deps/snpindex-mem.Tpo -c -o snpindex-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-uintlist.o -MD -MP -MF .deps/snpindex-uintlist.Tpo -c -o snpindex-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-uintlist.o -MD -MP -MF .deps/snpindex-uintlist.Tpo -c -o snpindex-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-assert.o -MD -MP -MF .deps/snpindex-assert.Tpo -c -o snpindex-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-assert.o -MD -MP -MF .deps/snpindex-assert.Tpo -c -o snpindex-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-interval.o -MD -MP -MF .deps/snpindex-interval.Tpo -c -o snpindex-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-interval.o -MD -MP -MF .deps/snpindex-interval.Tpo -c -o snpindex-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-semaphore.o -MD -MP -MF .deps/snpindex-semaphore.Tpo -c -o snpindex-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-semaphore.o -MD -MP -MF .deps/snpindex-semaphore.Tpo -c -o snpindex-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-access.o -MD -MP -MF .deps/snpindex-access.Tpo -c -o snpindex-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-access.o -MD -MP -MF .deps/snpindex-access.Tpo -c -o snpindex-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-filestring.o -MD -MP -MF .deps/snpindex-filestring.Tpo -c -o snpindex-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-filestring.o -MD -MP -MF .deps/snpindex-filestring.Tpo -c -o snpindex-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-iit-read.o -MD -MP -MF .deps/snpindex-iit-read.Tpo -c -o snpindex-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-iit-read.o -MD -MP -MF .deps/snpindex-iit-read.Tpo -c -o snpindex-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-iit-read-univ.o -MD -MP -MF .deps/snpindex-iit-read-univ.Tpo -c -o snpindex-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-iit-read-univ.o -MD -MP -MF .deps/snpindex-iit-read-univ.Tpo -c -o snpindex-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-popcount.o -MD -MP -MF .deps/snpindex-popcount.Tpo -c -o snpindex-popcount.o popcount.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-popcount.o -MD -MP -MF .deps/snpindex-popcount.Tpo -c -o snpindex-popcount.o popcount.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-compress.o -MD -MP -MF .deps/snpindex-compress.Tpo -c -o snpindex-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-compress.o -MD -MP -MF .deps/snpindex-compress.Tpo -c -o snpindex-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome128_hr.o -MD -MP -MF .deps/snpindex-genome128_hr.Tpo -c -o snpindex-genome128_hr.o genome128_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-genome128_hr.o -MD -MP -MF .deps/snpindex-genome128_hr.Tpo -c -o snpindex-genome128_hr.o genome128_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genomicpos.o -MD -MP -MF .deps/snpindex-genomicpos.Tpo -c -o snpindex-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-genomicpos.o -MD -MP -MF .deps/snpindex-genomicpos.Tpo -c -o snpindex-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-compress-write.o -MD -MP -MF .deps/snpindex-compress-write.Tpo -c -o snpindex-compress-write.o compress-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-compress-write.o -MD -MP -MF .deps/snpindex-compress-write.Tpo -c -o snpindex-compress-write.o compress-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome128_consec.o -MD -MP -MF .deps/snpindex-genome128_consec.Tpo -c -o snpindex-genome128_consec.o genome128_consec.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-genome128_consec.o -MD -MP -MF .deps/snpindex-genome128_consec.Tpo -c -o snpindex-genome128_consec.o genome128_consec.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-read.o -MD -MP -MF .deps/snpindex-bitpack64-read.Tpo -c -o snpindex-bitpack64-read.o bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bitpack64-read.o -MD -MP -MF .deps/snpindex-bitpack64-read.Tpo -c -o snpindex-bitpack64-read.o bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-access.o -MD -MP -MF .deps/snpindex-bitpack64-access.Tpo -c -o snpindex-bitpack64-access.o bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bitpack64-access.o -MD -MP -MF .deps/snpindex-bitpack64-access.Tpo -c -o snpindex-bitpack64-access.o bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-indexdb.o -MD -MP -MF .deps/snpindex-indexdb.Tpo -c -o snpindex-indexdb.o indexdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-indexdb.o -MD -MP -MF .deps/snpindex-indexdb.Tpo -c -o snpindex-indexdb.o indexdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-readtwo.o -MD -MP -MF .deps/snpindex-bitpack64-readtwo.Tpo -c -o snpindex-bitpack64-readtwo.o bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bitpack64-readtwo.o -MD -MP -MF .deps/snpindex-bitpack64-readtwo.Tpo -c -o snpindex-bitpack64-readtwo.o bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-incr.o -MD -MP -MF .deps/snpindex-bitpack64-incr.Tpo -c -o snpindex-bitpack64-incr.o bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bitpack64-incr.o -MD -MP -MF .deps/snpindex-bitpack64-incr.Tpo -c -o snpindex-bitpack64-incr.o bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bzip2.o -MD -MP -MF .deps/snpindex-bzip2.Tpo -c -o snpindex-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bzip2.o -MD -MP -MF .deps/snpindex-bzip2.Tpo -c -o snpindex-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getopt1.o -MD -MP -MF .deps/snpindex-getopt1.Tpo -c -o snpindex-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-getopt1.o -MD -MP -MF .deps/snpindex-getopt1.Tpo -c -o snpindex-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-bitpack64-write.o -MD -MP -MF .deps/snpindex-bitpack64-write.Tpo -c -o snpindex-bitpack64-write.o bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-bitpack64-write.o -MD -MP -MF .deps/snpindex-bitpack64-write.Tpo -c -o snpindex-bitpack64-write.o bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-except.o -MD -MP -MF .deps/cmetindex-except.Tpo -c -o cmetindex-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-except.o -MD -MP -MF .deps/cmetindex-except.Tpo -c -o cmetindex-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-md5.o -MD -MP -MF .deps/snpindex-md5.Tpo -c -o snpindex-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-md5.o -MD -MP -MF .deps/snpindex-md5.Tpo -c -o snpindex-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-parserange.o -MD -MP -MF .deps/snpindex-parserange.Tpo -c -o snpindex-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-parserange.o -MD -MP -MF .deps/snpindex-parserange.Tpo -c -o snpindex-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getline.o -MD -MP -MF .deps/snpindex-getline.Tpo -c -o snpindex-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-getline.o -MD -MP -MF .deps/snpindex-getline.Tpo -c -o snpindex-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-fopen.o -MD -MP -MF .deps/snpindex-fopen.Tpo -c -o snpindex-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-fopen.o -MD -MP -MF .deps/snpindex-fopen.Tpo -c -o snpindex-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-genome.o -MD -MP -MF .deps/snpindex-genome.Tpo -c -o snpindex-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-genome.o -MD -MP -MF .deps/snpindex-genome.Tpo -c -o snpindex-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-chrom.o -MD -MP -MF .deps/snpindex-chrom.Tpo -c -o snpindex-chrom.o chrom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-chrom.o -MD -MP -MF .deps/snpindex-chrom.Tpo -c -o snpindex-chrom.o chrom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-datadir.o -MD -MP -MF .deps/snpindex-datadir.Tpo -c -o snpindex-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-datadir.o -MD -MP -MF .deps/snpindex-datadir.Tpo -c -o snpindex-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-snpindex.o -MD -MP -MF .deps/snpindex-snpindex.Tpo -c -o snpindex-snpindex.o snpindex.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-snpindex.o -MD -MP -MF .deps/snpindex-snpindex.Tpo -c -o snpindex-snpindex.o snpindex.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-getopt.o -MD -MP -MF .deps/snpindex-getopt.Tpo -c -o snpindex-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-getopt.o -MD -MP -MF .deps/snpindex-getopt.Tpo -c -o snpindex-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-sequence.o -MD -MP -MF .deps/snpindex-sequence.Tpo -c -o snpindex-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-sequence.o -MD -MP -MF .deps/snpindex-sequence.Tpo -c -o snpindex-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT snpindex-indexdb-write.o -MD -MP -MF .deps/snpindex-indexdb-write.Tpo -c -o snpindex-indexdb-write.o indexdb-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT snpindex-indexdb-write.o -MD -MP -MF .deps/snpindex-indexdb-write.Tpo -c -o snpindex-indexdb-write.o indexdb-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bigendian.o -MD -MP -MF .deps/cmetindex-bigendian.Tpo -c -o cmetindex-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bigendian.o -MD -MP -MF .deps/cmetindex-bigendian.Tpo -c -o cmetindex-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-littleendian.o -MD -MP -MF .deps/cmetindex-littleendian.Tpo -c -o cmetindex-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-littleendian.o -MD -MP -MF .deps/cmetindex-littleendian.Tpo -c -o cmetindex-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-assert.o -MD -MP -MF .deps/cmetindex-assert.Tpo -c -o cmetindex-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-assert.o -MD -MP -MF .deps/cmetindex-assert.Tpo -c -o cmetindex-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-mem.o -MD -MP -MF .deps/cmetindex-mem.Tpo -c -o cmetindex-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-mem.o -MD -MP -MF .deps/cmetindex-mem.Tpo -c -o cmetindex-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-univinterval.o -MD -MP -MF .deps/cmetindex-univinterval.Tpo -c -o cmetindex-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-univinterval.o -MD -MP -MF .deps/cmetindex-univinterval.Tpo -c -o cmetindex-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-semaphore.o -MD -MP -MF .deps/cmetindex-semaphore.Tpo -c -o cmetindex-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-semaphore.o -MD -MP -MF .deps/cmetindex-semaphore.Tpo -c -o cmetindex-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-access.o -MD -MP -MF .deps/cmetindex-access.Tpo -c -o cmetindex-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-access.o -MD -MP -MF .deps/cmetindex-access.Tpo -c -o cmetindex-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-compress-write.o -MD -MP -MF .deps/cmetindex-compress-write.Tpo -c -o cmetindex-compress-write.o compress-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-compress-write.o -MD -MP -MF .deps/cmetindex-compress-write.Tpo -c -o cmetindex-compress-write.o compress-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-filestring.o -MD -MP -MF .deps/cmetindex-filestring.Tpo -c -o cmetindex-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-filestring.o -MD -MP -MF .deps/cmetindex-filestring.Tpo -c -o cmetindex-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-iit-read.o -MD -MP -MF .deps/cmetindex-iit-read.Tpo -c -o cmetindex-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-iit-read.o -MD -MP -MF .deps/cmetindex-iit-read.Tpo -c -o cmetindex-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genomicpos.o -MD -MP -MF .deps/cmetindex-genomicpos.Tpo -c -o cmetindex-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-genomicpos.o -MD -MP -MF .deps/cmetindex-genomicpos.Tpo -c -o cmetindex-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-stopwatch.o -MD -MP -MF .deps/cmetindex-stopwatch.Tpo -c -o cmetindex-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-stopwatch.o -MD -MP -MF .deps/cmetindex-stopwatch.Tpo -c -o cmetindex-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-compress.o -MD -MP -MF .deps/cmetindex-compress.Tpo -c -o cmetindex-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-compress.o -MD -MP -MF .deps/cmetindex-compress.Tpo -c -o cmetindex-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome128_hr.o -MD -MP -MF .deps/cmetindex-genome128_hr.Tpo -c -o cmetindex-genome128_hr.o genome128_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-genome128_hr.o -MD -MP -MF .deps/cmetindex-genome128_hr.Tpo -c -o cmetindex-genome128_hr.o genome128_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-iit-read-univ.o -MD -MP -MF .deps/cmetindex-iit-read-univ.Tpo -c -o cmetindex-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-iit-read-univ.o -MD -MP -MF .deps/cmetindex-iit-read-univ.Tpo -c -o cmetindex-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-interval.o -MD -MP -MF .deps/cmetindex-interval.Tpo -c -o cmetindex-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-interval.o -MD -MP -MF .deps/cmetindex-interval.Tpo -c -o cmetindex-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-write.o -MD -MP -MF .deps/cmetindex-bitpack64-write.Tpo -c -o cmetindex-bitpack64-write.o bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bitpack64-write.o -MD -MP -MF .deps/cmetindex-bitpack64-write.Tpo -c -o cmetindex-bitpack64-write.o bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-popcount.o -MD -MP -MF .deps/cmetindex-popcount.Tpo -c -o cmetindex-popcount.o popcount.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-popcount.o -MD -MP -MF .deps/cmetindex-popcount.Tpo -c -o cmetindex-popcount.o popcount.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-readtwo.o -MD -MP -MF .deps/cmetindex-bitpack64-readtwo.Tpo -c -o cmetindex-bitpack64-readtwo.o bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bitpack64-readtwo.o -MD -MP -MF .deps/cmetindex-bitpack64-readtwo.Tpo -c -o cmetindex-bitpack64-readtwo.o bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-read.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-read.Tpo -c -o cmetindex-epu16-bitpack64-read.o epu16-bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-read.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-read.Tpo -c -o cmetindex-epu16-bitpack64-read.o epu16-bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-bitpack64-incr.Tpo -c -o cmetindex-bitpack64-incr.o bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-bitpack64-incr.Tpo -c -o cmetindex-bitpack64-incr.o bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome128_consec.o -MD -MP -MF .deps/cmetindex-genome128_consec.Tpo -c -o cmetindex-genome128_consec.o genome128_consec.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-genome128_consec.o -MD -MP -MF .deps/cmetindex-genome128_consec.Tpo -c -o cmetindex-genome128_consec.o genome128_consec.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-access.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-access.Tpo -c -o cmetindex-epu16-bitpack64-access.o epu16-bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-access.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-access.Tpo -c -o cmetindex-epu16-bitpack64-access.o epu16-bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-incr.Tpo -c -o cmetindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-incr.Tpo -c -o cmetindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-localdb.o -MD -MP -MF .deps/cmetindex-localdb.Tpo -c -o cmetindex-localdb.o localdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-localdb.o -MD -MP -MF .deps/cmetindex-localdb.Tpo -c -o cmetindex-localdb.o localdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-write.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-write.Tpo -c -o cmetindex-epu16-bitpack64-write.o epu16-bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-epu16-bitpack64-write.o -MD -MP -MF .deps/cmetindex-epu16-bitpack64-write.Tpo -c -o cmetindex-epu16-bitpack64-write.o epu16-bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-indexdb-write.o -MD -MP -MF .deps/cmetindex-indexdb-write.Tpo -c -o cmetindex-indexdb-write.o indexdb-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-indexdb-write.o -MD -MP -MF .deps/cmetindex-indexdb-write.Tpo -c -o cmetindex-indexdb-write.o indexdb-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-access.o -MD -MP -MF .deps/cmetindex-bitpack64-access.Tpo -c -o cmetindex-bitpack64-access.o bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bitpack64-access.o -MD -MP -MF .deps/cmetindex-bitpack64-access.Tpo -c -o cmetindex-bitpack64-access.o bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-fopen.o -MD -MP -MF .deps/cmetindex-fopen.Tpo -c -o cmetindex-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-fopen.o -MD -MP -MF .deps/cmetindex-fopen.Tpo -c -o cmetindex-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-indexdb.o -MD -MP -MF .deps/cmetindex-indexdb.Tpo -c -o cmetindex-indexdb.o indexdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-indexdb.o -MD -MP -MF .deps/cmetindex-indexdb.Tpo -c -o cmetindex-indexdb.o indexdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bitpack64-read.o -MD -MP -MF .deps/cmetindex-bitpack64-read.Tpo -c -o cmetindex-bitpack64-read.o bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bitpack64-read.o -MD -MP -MF .deps/cmetindex-bitpack64-read.Tpo -c -o cmetindex-bitpack64-read.o bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-cmet.o -MD -MP -MF .deps/cmetindex-cmet.Tpo -c -o cmetindex-cmet.o cmet.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-cmet.o -MD -MP -MF .deps/cmetindex-cmet.Tpo -c -o cmetindex-cmet.o cmet.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-md5.o -MD -MP -MF .deps/cmetindex-md5.Tpo -c -o cmetindex-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-md5.o -MD -MP -MF .deps/cmetindex-md5.Tpo -c -o cmetindex-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-bzip2.o -MD -MP -MF .deps/cmetindex-bzip2.Tpo -c -o cmetindex-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-bzip2.o -MD -MP -MF .deps/cmetindex-bzip2.Tpo -c -o cmetindex-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getline.o -MD -MP -MF .deps/cmetindex-getline.Tpo -c -o cmetindex-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-getline.o -MD -MP -MF .deps/cmetindex-getline.Tpo -c -o cmetindex-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-datadir.o -MD -MP -MF .deps/cmetindex-datadir.Tpo -c -o cmetindex-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-datadir.o -MD -MP -MF .deps/cmetindex-datadir.Tpo -c -o cmetindex-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-uint8list.o -MD -MP -MF .deps/cmetindex-uint8list.Tpo -c -o cmetindex-uint8list.o uint8list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-uint8list.o -MD -MP -MF .deps/cmetindex-uint8list.Tpo -c -o cmetindex-uint8list.o uint8list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-genome.o -MD -MP -MF .deps/cmetindex-genome.Tpo -c -o cmetindex-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-genome.o -MD -MP -MF .deps/cmetindex-genome.Tpo -c -o cmetindex-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-sequence.o -MD -MP -MF .deps/cmetindex-sequence.Tpo -c -o cmetindex-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-sequence.o -MD -MP -MF .deps/cmetindex-sequence.Tpo -c -o cmetindex-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-parserange.o -MD -MP -MF .deps/cmetindex-parserange.Tpo -c -o cmetindex-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-parserange.o -MD -MP -MF .deps/cmetindex-parserange.Tpo -c -o cmetindex-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-list.o -MD -MP -MF .deps/cmetindex-list.Tpo -c -o cmetindex-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-list.o -MD -MP -MF .deps/cmetindex-list.Tpo -c -o cmetindex-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-intlist.o -MD -MP -MF .deps/cmetindex-intlist.Tpo -c -o cmetindex-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-intlist.o -MD -MP -MF .deps/cmetindex-intlist.Tpo -c -o cmetindex-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-uintlist.o -MD -MP -MF .deps/cmetindex-uintlist.Tpo -c -o cmetindex-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-uintlist.o -MD -MP -MF .deps/cmetindex-uintlist.Tpo -c -o cmetindex-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-assert.o -MD -MP -MF .deps/atoiindex-assert.Tpo -c -o atoiindex-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-assert.o -MD -MP -MF .deps/atoiindex-assert.Tpo -c -o atoiindex-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getopt1.o -MD -MP -MF .deps/cmetindex-getopt1.Tpo -c -o cmetindex-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-getopt1.o -MD -MP -MF .deps/cmetindex-getopt1.Tpo -c -o cmetindex-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-getopt.o -MD -MP -MF .deps/cmetindex-getopt.Tpo -c -o cmetindex-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-getopt.o -MD -MP -MF .deps/cmetindex-getopt.Tpo -c -o cmetindex-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT cmetindex-cmetindex.o -MD -MP -MF .deps/cmetindex-cmetindex.Tpo -c -o cmetindex-cmetindex.o cmetindex.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT cmetindex-cmetindex.o -MD -MP -MF .deps/cmetindex-cmetindex.Tpo -c -o cmetindex-cmetindex.o cmetindex.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-except.o -MD -MP -MF .deps/atoiindex-except.Tpo -c -o atoiindex-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-except.o -MD -MP -MF .deps/atoiindex-except.Tpo -c -o atoiindex-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-mem.o -MD -MP -MF .deps/atoiindex-mem.Tpo -c -o atoiindex-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-mem.o -MD -MP -MF .deps/atoiindex-mem.Tpo -c -o atoiindex-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-littleendian.o -MD -MP -MF .deps/atoiindex-littleendian.Tpo -c -o atoiindex-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-littleendian.o -MD -MP -MF .deps/atoiindex-littleendian.Tpo -c -o atoiindex-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bigendian.o -MD -MP -MF .deps/atoiindex-bigendian.Tpo -c -o atoiindex-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bigendian.o -MD -MP -MF .deps/atoiindex-bigendian.Tpo -c -o atoiindex-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genomicpos.o -MD -MP -MF .deps/atoiindex-genomicpos.Tpo -c -o atoiindex-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-genomicpos.o -MD -MP -MF .deps/atoiindex-genomicpos.Tpo -c -o atoiindex-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-stopwatch.o -MD -MP -MF .deps/atoiindex-stopwatch.Tpo -c -o atoiindex-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-stopwatch.o -MD -MP -MF .deps/atoiindex-stopwatch.Tpo -c -o atoiindex-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-semaphore.o -MD -MP -MF .deps/atoiindex-semaphore.Tpo -c -o atoiindex-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-semaphore.o -MD -MP -MF .deps/atoiindex-semaphore.Tpo -c -o atoiindex-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-access.o -MD -MP -MF .deps/atoiindex-access.Tpo -c -o atoiindex-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-access.o -MD -MP -MF .deps/atoiindex-access.Tpo -c -o atoiindex-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-interval.o -MD -MP -MF .deps/atoiindex-interval.Tpo -c -o atoiindex-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-interval.o -MD -MP -MF .deps/atoiindex-interval.Tpo -c -o atoiindex-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-univinterval.o -MD -MP -MF .deps/atoiindex-univinterval.Tpo -c -o atoiindex-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-univinterval.o -MD -MP -MF .deps/atoiindex-univinterval.Tpo -c -o atoiindex-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-iit-read-univ.o -MD -MP -MF .deps/atoiindex-iit-read-univ.Tpo -c -o atoiindex-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-iit-read-univ.o -MD -MP -MF .deps/atoiindex-iit-read-univ.Tpo -c -o atoiindex-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-filestring.o -MD -MP -MF .deps/atoiindex-filestring.Tpo -c -o atoiindex-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-filestring.o -MD -MP -MF .deps/atoiindex-filestring.Tpo -c -o atoiindex-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-compress-write.o -MD -MP -MF .deps/atoiindex-compress-write.Tpo -c -o atoiindex-compress-write.o compress-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-compress-write.o -MD -MP -MF .deps/atoiindex-compress-write.Tpo -c -o atoiindex-compress-write.o compress-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-iit-read.o -MD -MP -MF .deps/atoiindex-iit-read.Tpo -c -o atoiindex-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-iit-read.o -MD -MP -MF .deps/atoiindex-iit-read.Tpo -c -o atoiindex-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-popcount.o -MD -MP -MF .deps/atoiindex-popcount.Tpo -c -o atoiindex-popcount.o popcount.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-popcount.o -MD -MP -MF .deps/atoiindex-popcount.Tpo -c -o atoiindex-popcount.o popcount.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-compress.o -MD -MP -MF .deps/atoiindex-compress.Tpo -c -o atoiindex-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-compress.o -MD -MP -MF .deps/atoiindex-compress.Tpo -c -o atoiindex-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome128_hr.o -MD -MP -MF .deps/atoiindex-genome128_hr.Tpo -c -o atoiindex-genome128_hr.o genome128_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-genome128_hr.o -MD -MP -MF .deps/atoiindex-genome128_hr.Tpo -c -o atoiindex-genome128_hr.o genome128_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome128_consec.o -MD -MP -MF .deps/atoiindex-genome128_consec.Tpo -c -o atoiindex-genome128_consec.o genome128_consec.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-genome128_consec.o -MD -MP -MF .deps/atoiindex-genome128_consec.Tpo -c -o atoiindex-genome128_consec.o genome128_consec.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-read.o -MD -MP -MF .deps/atoiindex-bitpack64-read.Tpo -c -o atoiindex-bitpack64-read.o bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bitpack64-read.o -MD -MP -MF .deps/atoiindex-bitpack64-read.Tpo -c -o atoiindex-bitpack64-read.o bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-readtwo.o -MD -MP -MF .deps/atoiindex-bitpack64-readtwo.Tpo -c -o atoiindex-bitpack64-readtwo.o bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bitpack64-readtwo.o -MD -MP -MF .deps/atoiindex-bitpack64-readtwo.Tpo -c -o atoiindex-bitpack64-readtwo.o bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-access.o -MD -MP -MF .deps/atoiindex-bitpack64-access.Tpo -c -o atoiindex-bitpack64-access.o bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bitpack64-access.o -MD -MP -MF .deps/atoiindex-bitpack64-access.Tpo -c -o atoiindex-bitpack64-access.o bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-bitpack64-incr.Tpo -c -o atoiindex-bitpack64-incr.o bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-bitpack64-incr.Tpo -c -o atoiindex-bitpack64-incr.o bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-read.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-read.Tpo -c -o atoiindex-epu16-bitpack64-read.o epu16-bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-read.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-read.Tpo -c -o atoiindex-epu16-bitpack64-read.o epu16-bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-write.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-write.Tpo -c -o atoiindex-epu16-bitpack64-write.o epu16-bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-write.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-write.Tpo -c -o atoiindex-epu16-bitpack64-write.o epu16-bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bitpack64-write.o -MD -MP -MF .deps/atoiindex-bitpack64-write.Tpo -c -o atoiindex-bitpack64-write.o bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bitpack64-write.o -MD -MP -MF .deps/atoiindex-bitpack64-write.Tpo -c -o atoiindex-bitpack64-write.o bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-incr.Tpo -c -o atoiindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-incr.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-incr.Tpo -c -o atoiindex-epu16-bitpack64-incr.o epu16-bitpack64-incr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-indexdb.o -MD -MP -MF .deps/atoiindex-indexdb.Tpo -c -o atoiindex-indexdb.o indexdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-indexdb.o -MD -MP -MF .deps/atoiindex-indexdb.Tpo -c -o atoiindex-indexdb.o indexdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-access.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-access.Tpo -c -o atoiindex-epu16-bitpack64-access.o epu16-bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-epu16-bitpack64-access.o -MD -MP -MF .deps/atoiindex-epu16-bitpack64-access.Tpo -c -o atoiindex-epu16-bitpack64-access.o epu16-bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-indexdb-write.o -MD -MP -MF .deps/atoiindex-indexdb-write.Tpo -c -o atoiindex-indexdb-write.o indexdb-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-indexdb-write.o -MD -MP -MF .deps/atoiindex-indexdb-write.Tpo -c -o atoiindex-indexdb-write.o indexdb-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-localdb.o -MD -MP -MF .deps/atoiindex-localdb.Tpo -c -o atoiindex-localdb.o localdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-localdb.o -MD -MP -MF .deps/atoiindex-localdb.Tpo -c -o atoiindex-localdb.o localdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-atoi.o -MD -MP -MF .deps/atoiindex-atoi.Tpo -c -o atoiindex-atoi.o atoi.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-atoi.o -MD -MP -MF .deps/atoiindex-atoi.Tpo -c -o atoiindex-atoi.o atoi.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-md5.o -MD -MP -MF .deps/atoiindex-md5.Tpo -c -o atoiindex-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-md5.o -MD -MP -MF .deps/atoiindex-md5.Tpo -c -o atoiindex-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-bzip2.o -MD -MP -MF .deps/atoiindex-bzip2.Tpo -c -o atoiindex-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-bzip2.o -MD -MP -MF .deps/atoiindex-bzip2.Tpo -c -o atoiindex-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-fopen.o -MD -MP -MF .deps/atoiindex-fopen.Tpo -c -o atoiindex-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-fopen.o -MD -MP -MF .deps/atoiindex-fopen.Tpo -c -o atoiindex-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-sequence.o -MD -MP -MF .deps/atoiindex-sequence.Tpo -c -o atoiindex-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-sequence.o -MD -MP -MF .deps/atoiindex-sequence.Tpo -c -o atoiindex-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-genome.o -MD -MP -MF .deps/atoiindex-genome.Tpo -c -o atoiindex-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-genome.o -MD -MP -MF .deps/atoiindex-genome.Tpo -c -o atoiindex-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-uintlist.o -MD -MP -MF .deps/atoiindex-uintlist.Tpo -c -o atoiindex-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-uintlist.o -MD -MP -MF .deps/atoiindex-uintlist.Tpo -c -o atoiindex-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-intlist.o -MD -MP -MF .deps/atoiindex-intlist.Tpo -c -o atoiindex-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-intlist.o -MD -MP -MF .deps/atoiindex-intlist.Tpo -c -o atoiindex-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-uint8list.o -MD -MP -MF .deps/atoiindex-uint8list.Tpo -c -o atoiindex-uint8list.o uint8list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-uint8list.o -MD -MP -MF .deps/atoiindex-uint8list.Tpo -c -o atoiindex-uint8list.o uint8list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-parserange.o -MD -MP -MF .deps/atoiindex-parserange.Tpo -c -o atoiindex-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-parserange.o -MD -MP -MF .deps/atoiindex-parserange.Tpo -c -o atoiindex-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getopt.o -MD -MP -MF .deps/atoiindex-getopt.Tpo -c -o atoiindex-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-getopt.o -MD -MP -MF .deps/atoiindex-getopt.Tpo -c -o atoiindex-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-list.o -MD -MP -MF .deps/atoiindex-list.Tpo -c -o atoiindex-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-list.o -MD -MP -MF .deps/atoiindex-list.Tpo -c -o atoiindex-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getline.o -MD -MP -MF .deps/atoiindex-getline.Tpo -c -o atoiindex-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-getline.o -MD -MP -MF .deps/atoiindex-getline.Tpo -c -o atoiindex-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-getopt1.o -MD -MP -MF .deps/atoiindex-getopt1.Tpo -c -o atoiindex-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-getopt1.o -MD -MP -MF .deps/atoiindex-getopt1.Tpo -c -o atoiindex-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-atoiindex.o -MD -MP -MF .deps/atoiindex-atoiindex.Tpo -c -o atoiindex-atoiindex.o atoiindex.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-atoiindex.o -MD -MP -MF .deps/atoiindex-atoiindex.Tpo -c -o atoiindex-atoiindex.o atoiindex.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT atoiindex-datadir.o -MD -MP -MF .deps/atoiindex-datadir.Tpo -c -o atoiindex-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT atoiindex-datadir.o -MD -MP -MF .deps/atoiindex-datadir.Tpo -c -o atoiindex-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-except.o -MD -MP -MF .deps/trindex-except.Tpo -c -o trindex-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-except.o -MD -MP -MF .deps/trindex-except.Tpo -c -o trindex-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-assert.o -MD -MP -MF .deps/trindex-assert.Tpo -c -o trindex-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-assert.o -MD -MP -MF .deps/trindex-assert.Tpo -c -o trindex-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-mem.o -MD -MP -MF .deps/trindex-mem.Tpo -c -o trindex-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-mem.o -MD -MP -MF .deps/trindex-mem.Tpo -c -o trindex-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-littleendian.o -MD -MP -MF .deps/trindex-littleendian.Tpo -c -o trindex-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-littleendian.o -MD -MP -MF .deps/trindex-littleendian.Tpo -c -o trindex-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bigendian.o -MD -MP -MF .deps/trindex-bigendian.Tpo -c -o trindex-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-bigendian.o -MD -MP -MF .deps/trindex-bigendian.Tpo -c -o trindex-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-genomicpos.o -MD -MP -MF .deps/trindex-genomicpos.Tpo -c -o trindex-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-genomicpos.o -MD -MP -MF .deps/trindex-genomicpos.Tpo -c -o trindex-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-stopwatch.o -MD -MP -MF .deps/trindex-stopwatch.Tpo -c -o trindex-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-stopwatch.o -MD -MP -MF .deps/trindex-stopwatch.Tpo -c -o trindex-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-semaphore.o -MD -MP -MF .deps/trindex-semaphore.Tpo -c -o trindex-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-semaphore.o -MD -MP -MF .deps/trindex-semaphore.Tpo -c -o trindex-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-access.o -MD -MP -MF .deps/trindex-access.Tpo -c -o trindex-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-access.o -MD -MP -MF .deps/trindex-access.Tpo -c -o trindex-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-filestring.o -MD -MP -MF .deps/trindex-filestring.Tpo -c -o trindex-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-filestring.o -MD -MP -MF .deps/trindex-filestring.Tpo -c -o trindex-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-iit-read.o -MD -MP -MF .deps/trindex-iit-read.Tpo -c -o trindex-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-iit-read.o -MD -MP -MF .deps/trindex-iit-read.Tpo -c -o trindex-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bitpack64-access.o -MD -MP -MF .deps/trindex-bitpack64-access.Tpo -c -o trindex-bitpack64-access.o bitpack64-access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-bitpack64-access.o -MD -MP -MF .deps/trindex-bitpack64-access.Tpo -c -o trindex-bitpack64-access.o bitpack64-access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-interval.o -MD -MP -MF .deps/trindex-interval.Tpo -c -o trindex-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-interval.o -MD -MP -MF .deps/trindex-interval.Tpo -c -o trindex-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-bitpack64-write.o -MD -MP -MF .deps/trindex-bitpack64-write.Tpo -c -o trindex-bitpack64-write.o bitpack64-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-bitpack64-write.o -MD -MP -MF .deps/trindex-bitpack64-write.Tpo -c -o trindex-bitpack64-write.o bitpack64-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-uintlist.o -MD -MP -MF .deps/trindex-uintlist.Tpo -c -o trindex-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-uintlist.o -MD -MP -MF .deps/trindex-uintlist.Tpo -c -o trindex-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-intlist.o -MD -MP -MF .deps/trindex-intlist.Tpo -c -o trindex-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-intlist.o -MD -MP -MF .deps/trindex-intlist.Tpo -c -o trindex-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getopt1.o -MD -MP -MF .deps/trindex-getopt1.Tpo -c -o trindex-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-getopt1.o -MD -MP -MF .deps/trindex-getopt1.Tpo -c -o trindex-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-list.o -MD -MP -MF .deps/trindex-list.Tpo -c -o trindex-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-list.o -MD -MP -MF .deps/trindex-list.Tpo -c -o trindex-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-datadir.o -MD -MP -MF .deps/trindex-datadir.Tpo -c -o trindex-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-datadir.o -MD -MP -MF .deps/trindex-datadir.Tpo -c -o trindex-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getopt.o -MD -MP -MF .deps/trindex-getopt.Tpo -c -o trindex-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-getopt.o -MD -MP -MF .deps/trindex-getopt.Tpo -c -o trindex-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-getline.o -MD -MP -MF .deps/trindex-getline.Tpo -c -o trindex-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-getline.o -MD -MP -MF .deps/trindex-getline.Tpo -c -o trindex-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT trindex-trindex.o -MD -MP -MF .deps/trindex-trindex.Tpo -c -o trindex-trindex.o trindex.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT trindex-trindex.o -MD -MP -MF .deps/trindex-trindex.Tpo -c -o trindex-trindex.o trindex.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-assert.o -MD -MP -MF .deps/sam_sort-assert.Tpo -c -o sam_sort-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-assert.o -MD -MP -MF .deps/sam_sort-assert.Tpo -c -o sam_sort-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-mem.o -MD -MP -MF .deps/sam_sort-mem.Tpo -c -o sam_sort-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-mem.o -MD -MP -MF .deps/sam_sort-mem.Tpo -c -o sam_sort-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-except.o -MD -MP -MF .deps/sam_sort-except.Tpo -c -o sam_sort-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-except.o -MD -MP -MF .deps/sam_sort-except.Tpo -c -o sam_sort-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-littleendian.o -MD -MP -MF .deps/sam_sort-littleendian.Tpo -c -o sam_sort-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-littleendian.o -MD -MP -MF .deps/sam_sort-littleendian.Tpo -c -o sam_sort-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-bigendian.o -MD -MP -MF .deps/sam_sort-bigendian.Tpo -c -o sam_sort-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-bigendian.o -MD -MP -MF .deps/sam_sort-bigendian.Tpo -c -o sam_sort-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-list.o -MD -MP -MF .deps/sam_sort-list.Tpo -c -o sam_sort-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-list.o -MD -MP -MF .deps/sam_sort-list.Tpo -c -o sam_sort-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-intlist.o -MD -MP -MF .deps/sam_sort-intlist.Tpo -c -o sam_sort-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-intlist.o -MD -MP -MF .deps/sam_sort-intlist.Tpo -c -o sam_sort-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-stopwatch.o -MD -MP -MF .deps/sam_sort-stopwatch.Tpo -c -o sam_sort-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-stopwatch.o -MD -MP -MF .deps/sam_sort-stopwatch.Tpo -c -o sam_sort-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-semaphore.o -MD -MP -MF .deps/sam_sort-semaphore.Tpo -c -o sam_sort-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-semaphore.o -MD -MP -MF .deps/sam_sort-semaphore.Tpo -c -o sam_sort-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-uintlist.o -MD -MP -MF .deps/sam_sort-uintlist.Tpo -c -o sam_sort-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-uintlist.o -MD -MP -MF .deps/sam_sort-uintlist.Tpo -c -o sam_sort-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-univinterval.o -MD -MP -MF .deps/sam_sort-univinterval.Tpo -c -o sam_sort-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-univinterval.o -MD -MP -MF .deps/sam_sort-univinterval.Tpo -c -o sam_sort-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-access.o -MD -MP -MF .deps/sam_sort-access.Tpo -c -o sam_sort-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-access.o -MD -MP -MF .deps/sam_sort-access.Tpo -c -o sam_sort-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-interval.o -MD -MP -MF .deps/sam_sort-interval.Tpo -c -o sam_sort-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-interval.o -MD -MP -MF .deps/sam_sort-interval.Tpo -c -o sam_sort-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-filestring.o -MD -MP -MF .deps/sam_sort-filestring.Tpo -c -o sam_sort-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-filestring.o -MD -MP -MF .deps/sam_sort-filestring.Tpo -c -o sam_sort-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-iit-read.o -MD -MP -MF .deps/sam_sort-iit-read.Tpo -c -o sam_sort-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-iit-read.o -MD -MP -MF .deps/sam_sort-iit-read.Tpo -c -o sam_sort-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-iit-read-univ.o -MD -MP -MF .deps/sam_sort-iit-read-univ.Tpo -c -o sam_sort-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-iit-read-univ.o -MD -MP -MF .deps/sam_sort-iit-read-univ.Tpo -c -o sam_sort-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-parserange.o -MD -MP -MF .deps/sam_sort-parserange.Tpo -c -o sam_sort-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-parserange.o -MD -MP -MF .deps/sam_sort-parserange.Tpo -c -o sam_sort-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-samheader.o -MD -MP -MF .deps/sam_sort-samheader.Tpo -c -o sam_sort-samheader.o samheader.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-samheader.o -MD -MP -MF .deps/sam_sort-samheader.Tpo -c -o sam_sort-samheader.o samheader.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-samread.o -MD -MP -MF .deps/sam_sort-samread.Tpo -c -o sam_sort-samread.o samread.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-samread.o -MD -MP -MF .deps/sam_sort-samread.Tpo -c -o sam_sort-samread.o samread.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getline.o -MD -MP -MF .deps/sam_sort-getline.Tpo -c -o sam_sort-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-getline.o -MD -MP -MF .deps/sam_sort-getline.Tpo -c -o sam_sort-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-datadir.o -MD -MP -MF .deps/sam_sort-datadir.Tpo -c -o sam_sort-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-datadir.o -MD -MP -MF .deps/sam_sort-datadir.Tpo -c -o sam_sort-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getopt1.o -MD -MP -MF .deps/sam_sort-getopt1.Tpo -c -o sam_sort-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-getopt1.o -MD -MP -MF .deps/sam_sort-getopt1.Tpo -c -o sam_sort-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-getopt.o -MD -MP -MF .deps/sam_sort-getopt.Tpo -c -o sam_sort-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-getopt.o -MD -MP -MF .deps/sam_sort-getopt.Tpo -c -o sam_sort-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-assert.o -MD -MP -MF .deps/gmap_avx512-assert.Tpo -c -o gmap_avx512-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-assert.o -MD -MP -MF .deps/gmap_avx512-assert.Tpo -c -o gmap_avx512-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -O3 -fomit-frame-pointer -MT sam_sort-sam_sort.o -MD -MP -MF .deps/sam_sort-sam_sort.Tpo -c -o sam_sort-sam_sort.o sam_sort.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DUTILITYP=1 -fomit-frame-pointer -MT sam_sort-sam_sort.o -MD -MP -MF .deps/sam_sort-sam_sort.Tpo -c -o sam_sort-sam_sort.o sam_sort.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-intlist.o -MD -MP -MF .deps/gmap_avx512-intlist.Tpo -c -o gmap_avx512-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-intlist.o -MD -MP -MF .deps/gmap_avx512-intlist.Tpo -c -o gmap_avx512-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-except.o -MD -MP -MF .deps/gmap_avx512-except.Tpo -c -o gmap_avx512-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-except.o -MD -MP -MF .deps/gmap_avx512-except.Tpo -c -o gmap_avx512-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-mem.o -MD -MP -MF .deps/gmap_avx512-mem.Tpo -c -o gmap_avx512-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-mem.o -MD -MP -MF .deps/gmap_avx512-mem.Tpo -c -o gmap_avx512-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-univinterval.o -MD -MP -MF .deps/gmap_avx512-univinterval.Tpo -c -o gmap_avx512-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-univinterval.o -MD -MP -MF .deps/gmap_avx512-univinterval.Tpo -c -o gmap_avx512-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bigendian.o -MD -MP -MF .deps/gmap_avx512-bigendian.Tpo -c -o gmap_avx512-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-bigendian.o -MD -MP -MF .deps/gmap_avx512-bigendian.Tpo -c -o gmap_avx512-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-semaphore.o -MD -MP -MF .deps/gmap_avx512-semaphore.Tpo -c -o gmap_avx512-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-semaphore.o -MD -MP -MF .deps/gmap_avx512-semaphore.Tpo -c -o gmap_avx512-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-uintlist.o -MD -MP -MF .deps/gmap_avx512-uintlist.Tpo -c -o gmap_avx512-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-uintlist.o -MD -MP -MF .deps/gmap_avx512-uintlist.Tpo -c -o gmap_avx512-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-littleendian.o -MD -MP -MF .deps/gmap_avx512-littleendian.Tpo -c -o gmap_avx512-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-littleendian.o -MD -MP -MF .deps/gmap_avx512-littleendian.Tpo -c -o gmap_avx512-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stopwatch.o -MD -MP -MF .deps/gmap_avx512-stopwatch.Tpo -c -o gmap_avx512-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-stopwatch.o -MD -MP -MF .deps/gmap_avx512-stopwatch.Tpo -c -o gmap_avx512-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-interval.o -MD -MP -MF .deps/gmap_avx512-interval.Tpo -c -o gmap_avx512-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-interval.o -MD -MP -MF .deps/gmap_avx512-interval.Tpo -c -o gmap_avx512-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-list.o -MD -MP -MF .deps/gmap_avx512-list.Tpo -c -o gmap_avx512-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-list.o -MD -MP -MF .deps/gmap_avx512-list.Tpo -c -o gmap_avx512-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-access.o -MD -MP -MF .deps/gmap_avx512-access.Tpo -c -o gmap_avx512-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-access.o -MD -MP -MF .deps/gmap_avx512-access.Tpo -c -o gmap_avx512-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-filestring.o -MD -MP -MF .deps/gmap_avx512-filestring.Tpo -c -o gmap_avx512-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-filestring.o -MD -MP -MF .deps/gmap_avx512-filestring.Tpo -c -o gmap_avx512-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-iit-read.o -MD -MP -MF .deps/gmap_avx512-iit-read.Tpo -c -o gmap_avx512-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-iit-read.o -MD -MP -MF .deps/gmap_avx512-iit-read.Tpo -c -o gmap_avx512-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-md5.o -MD -MP -MF .deps/gmap_avx512-md5.Tpo -c -o gmap_avx512-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-md5.o -MD -MP -MF .deps/gmap_avx512-md5.Tpo -c -o gmap_avx512-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bzip2.o -MD -MP -MF .deps/gmap_avx512-bzip2.Tpo -c -o gmap_avx512-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-bzip2.o -MD -MP -MF .deps/gmap_avx512-bzip2.Tpo -c -o gmap_avx512-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-iit-read-univ.o -MD -MP -MF .deps/gmap_avx512-iit-read-univ.Tpo -c -o gmap_avx512-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-iit-read-univ.o -MD -MP -MF .deps/gmap_avx512-iit-read-univ.Tpo -c -o gmap_avx512-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-fopen.o -MD -MP -MF .deps/gmap_avx512-fopen.Tpo -c -o gmap_avx512-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-fopen.o -MD -MP -MF .deps/gmap_avx512-fopen.Tpo -c -o gmap_avx512-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-reader.o -MD -MP -MF .deps/gmap_avx512-reader.Tpo -c -o gmap_avx512-reader.o reader.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-reader.o -MD -MP -MF .deps/gmap_avx512-reader.Tpo -c -o gmap_avx512-reader.o reader.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genomicpos.o -MD -MP -MF .deps/gmap_avx512-genomicpos.Tpo -c -o gmap_avx512-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-genomicpos.o -MD -MP -MF .deps/gmap_avx512-genomicpos.Tpo -c -o gmap_avx512-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-sequence.o -MD -MP -MF .deps/gmap_avx512-sequence.Tpo -c -o gmap_avx512-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-sequence.o -MD -MP -MF .deps/gmap_avx512-sequence.Tpo -c -o gmap_avx512-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-compress-write.o -MD -MP -MF .deps/gmap_avx512-compress-write.Tpo -c -o gmap_avx512-compress-write.o compress-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-compress-write.o -MD -MP -MF .deps/gmap_avx512-compress-write.Tpo -c -o gmap_avx512-compress-write.o compress-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-compress.o -MD -MP -MF .deps/gmap_avx512-compress.Tpo -c -o gmap_avx512-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-compress.o -MD -MP -MF .deps/gmap_avx512-compress.Tpo -c -o gmap_avx512-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gbuffer.o -MD -MP -MF .deps/gmap_avx512-gbuffer.Tpo -c -o gmap_avx512-gbuffer.o gbuffer.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-gbuffer.o -MD -MP -MF .deps/gmap_avx512-gbuffer.Tpo -c -o gmap_avx512-gbuffer.o gbuffer.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-popcount.o -MD -MP -MF .deps/gmap_avx512-popcount.Tpo -c -o gmap_avx512-popcount.o popcount.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-popcount.o -MD -MP -MF .deps/gmap_avx512-popcount.Tpo -c -o gmap_avx512-popcount.o popcount.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome.o -MD -MP -MF .deps/gmap_avx512-genome.Tpo -c -o gmap_avx512-genome.o genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-genome.o -MD -MP -MF .deps/gmap_avx512-genome.Tpo -c -o gmap_avx512-genome.o genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome128_hr.o -MD -MP -MF .deps/gmap_avx512-genome128_hr.Tpo -c -o gmap_avx512-genome128_hr.o genome128_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-genome128_hr.o -MD -MP -MF .deps/gmap_avx512-genome128_hr.Tpo -c -o gmap_avx512-genome128_hr.o genome128_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-indexdb.o -MD -MP -MF .deps/gmap_avx512-indexdb.Tpo -c -o gmap_avx512-indexdb.o indexdb.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-indexdb.o -MD -MP -MF .deps/gmap_avx512-indexdb.Tpo -c -o gmap_avx512-indexdb.o indexdb.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome_sites.o -MD -MP -MF .deps/gmap_avx512-genome_sites.Tpo -c -o gmap_avx512-genome_sites.o genome_sites.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-genome_sites.o -MD -MP -MF .deps/gmap_avx512-genome_sites.Tpo -c -o gmap_avx512-genome_sites.o genome_sites.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-bitpack64-readtwo.Tpo -c -o gmap_avx512-bitpack64-readtwo.o bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-bitpack64-readtwo.Tpo -c -o gmap_avx512-bitpack64-readtwo.o bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-genome-write.o -MD -MP -MF .deps/gmap_avx512-genome-write.Tpo -c -o gmap_avx512-genome-write.o genome-write.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-genome-write.o -MD -MP -MF .deps/gmap_avx512-genome-write.Tpo -c -o gmap_avx512-genome-write.o genome-write.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-bitpack64-read.Tpo -c -o gmap_avx512-bitpack64-read.o bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-bitpack64-read.Tpo -c -o gmap_avx512-bitpack64-read.o bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-readtwo.Tpo -c -o gmap_avx512-epu16-bitpack64-readtwo.o epu16-bitpack64-readtwo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-readtwo.Tpo -c -o gmap_avx512-epu16-bitpack64-readtwo.o epu16-bitpack64-readtwo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-read.Tpo -c -o gmap_avx512-epu16-bitpack64-read.o epu16-bitpack64-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-epu16-bitpack64-read.o -MD -MP -MF .deps/gmap_avx512-epu16-bitpack64-read.Tpo -c -o gmap_avx512-epu16-bitpack64-read.o epu16-bitpack64-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-oligo.o -MD -MP -MF .deps/gmap_avx512-oligo.Tpo -c -o gmap_avx512-oligo.o oligo.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-oligo.o -MD -MP -MF .deps/gmap_avx512-oligo.Tpo -c -o gmap_avx512-oligo.o oligo.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chrom.o -MD -MP -MF .deps/gmap_avx512-chrom.Tpo -c -o gmap_avx512-chrom.o chrom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-chrom.o -MD -MP -MF .deps/gmap_avx512-chrom.Tpo -c -o gmap_avx512-chrom.o chrom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-block.o -MD -MP -MF .deps/gmap_avx512-block.Tpo -c -o gmap_avx512-block.o block.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-block.o -MD -MP -MF .deps/gmap_avx512-block.Tpo -c -o gmap_avx512-block.o block.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-segmentpos.o -MD -MP -MF .deps/gmap_avx512-segmentpos.Tpo -c -o gmap_avx512-segmentpos.o segmentpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-segmentpos.o -MD -MP -MF .deps/gmap_avx512-segmentpos.Tpo -c -o gmap_avx512-segmentpos.o segmentpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-match.o -MD -MP -MF .deps/gmap_avx512-match.Tpo -c -o gmap_avx512-match.o match.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-match.o -MD -MP -MF .deps/gmap_avx512-match.Tpo -c -o gmap_avx512-match.o match.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diagnostic.o -MD -MP -MF .deps/gmap_avx512-diagnostic.Tpo -c -o gmap_avx512-diagnostic.o diagnostic.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-diagnostic.o -MD -MP -MF .deps/gmap_avx512-diagnostic.Tpo -c -o gmap_avx512-diagnostic.o diagnostic.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage1.o -MD -MP -MF .deps/gmap_avx512-stage1.Tpo -c -o gmap_avx512-stage1.o stage1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-stage1.o -MD -MP -MF .deps/gmap_avx512-stage1.Tpo -c -o gmap_avx512-stage1.o stage1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chrnum.o -MD -MP -MF .deps/gmap_avx512-chrnum.Tpo -c -o gmap_avx512-chrnum.o chrnum.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-chrnum.o -MD -MP -MF .deps/gmap_avx512-chrnum.Tpo -c -o gmap_avx512-chrnum.o chrnum.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-uinttable_rh.o -MD -MP -MF .deps/gmap_avx512-uinttable_rh.Tpo -c -o gmap_avx512-uinttable_rh.o uinttable_rh.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-uinttable_rh.o -MD -MP -MF .deps/gmap_avx512-uinttable_rh.Tpo -c -o gmap_avx512-uinttable_rh.o uinttable_rh.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gregion.o -MD -MP -MF .deps/gmap_avx512-gregion.Tpo -c -o gmap_avx512-gregion.o gregion.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-gregion.o -MD -MP -MF .deps/gmap_avx512-gregion.Tpo -c -o gmap_avx512-gregion.o gregion.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-cmet.o -MD -MP -MF .deps/gmap_avx512-cmet.Tpo -c -o gmap_avx512-cmet.o cmet.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-cmet.o -MD -MP -MF .deps/gmap_avx512-cmet.Tpo -c -o gmap_avx512-cmet.o cmet.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-matchpool.o -MD -MP -MF .deps/gmap_avx512-matchpool.Tpo -c -o gmap_avx512-matchpool.o matchpool.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-matchpool.o -MD -MP -MF .deps/gmap_avx512-matchpool.Tpo -c -o gmap_avx512-matchpool.o matchpool.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diagpool.o -MD -MP -MF .deps/gmap_avx512-diagpool.Tpo -c -o gmap_avx512-diagpool.o diagpool.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-diagpool.o -MD -MP -MF .deps/gmap_avx512-diagpool.Tpo -c -o gmap_avx512-diagpool.o diagpool.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-atoi.o -MD -MP -MF .deps/gmap_avx512-atoi.Tpo -c -o gmap_avx512-atoi.o atoi.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-atoi.o -MD -MP -MF .deps/gmap_avx512-atoi.Tpo -c -o gmap_avx512-atoi.o atoi.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-diag.o -MD -MP -MF .deps/gmap_avx512-diag.Tpo -c -o gmap_avx512-diag.o diag.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-diag.o -MD -MP -MF .deps/gmap_avx512-diag.Tpo -c -o gmap_avx512-diag.o diag.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-oligoindex_hr.o -MD -MP -MF .deps/gmap_avx512-oligoindex_hr.Tpo -c -o gmap_avx512-oligoindex_hr.o oligoindex_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-oligoindex_hr.o -MD -MP -MF .deps/gmap_avx512-oligoindex_hr.Tpo -c -o gmap_avx512-oligoindex_hr.o oligoindex_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-intron.o -MD -MP -MF .deps/gmap_avx512-intron.Tpo -c -o gmap_avx512-intron.o intron.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-intron.o -MD -MP -MF .deps/gmap_avx512-intron.Tpo -c -o gmap_avx512-intron.o intron.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-orderstat.o -MD -MP -MF .deps/gmap_avx512-orderstat.Tpo -c -o gmap_avx512-orderstat.o orderstat.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-orderstat.o -MD -MP -MF .deps/gmap_avx512-orderstat.Tpo -c -o gmap_avx512-orderstat.o orderstat.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-transcript.o -MD -MP -MF .deps/gmap_avx512-transcript.Tpo -c -o gmap_avx512-transcript.o transcript.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-transcript.o -MD -MP -MF .deps/gmap_avx512-transcript.Tpo -c -o gmap_avx512-transcript.o transcript.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-maxent.o -MD -MP -MF .deps/gmap_avx512-maxent.Tpo -c -o gmap_avx512-maxent.o maxent.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-maxent.o -MD -MP -MF .deps/gmap_avx512-maxent.Tpo -c -o gmap_avx512-maxent.o maxent.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-maxent_hr.o -MD -MP -MF .deps/gmap_avx512-maxent_hr.Tpo -c -o gmap_avx512-maxent_hr.o maxent_hr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-maxent_hr.o -MD -MP -MF .deps/gmap_avx512-maxent_hr.Tpo -c -o gmap_avx512-maxent_hr.o maxent_hr.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pair.o -MD -MP -MF .deps/gmap_avx512-pair.Tpo -c -o gmap_avx512-pair.o pair.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-pair.o -MD -MP -MF .deps/gmap_avx512-pair.Tpo -c -o gmap_avx512-pair.o pair.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pairpool.o -MD -MP -MF .deps/gmap_avx512-pairpool.Tpo -c -o gmap_avx512-pairpool.o pairpool.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-pairpool.o -MD -MP -MF .deps/gmap_avx512-pairpool.Tpo -c -o gmap_avx512-pairpool.o pairpool.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage2.o -MD -MP -MF .deps/gmap_avx512-stage2.Tpo -c -o gmap_avx512-stage2.o stage2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-stage2.o -MD -MP -MF .deps/gmap_avx512-stage2.Tpo -c -o gmap_avx512-stage2.o stage2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-cellpool.o -MD -MP -MF .deps/gmap_avx512-cellpool.Tpo -c -o gmap_avx512-cellpool.o cellpool.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-cellpool.o -MD -MP -MF .deps/gmap_avx512-cellpool.Tpo -c -o gmap_avx512-cellpool.o cellpool.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-doublelist.o -MD -MP -MF .deps/gmap_avx512-doublelist.Tpo -c -o gmap_avx512-doublelist.o doublelist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-doublelist.o -MD -MP -MF .deps/gmap_avx512-doublelist.Tpo -c -o gmap_avx512-doublelist.o doublelist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-smooth.o -MD -MP -MF .deps/gmap_avx512-smooth.Tpo -c -o gmap_avx512-smooth.o smooth.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-smooth.o -MD -MP -MF .deps/gmap_avx512-smooth.Tpo -c -o gmap_avx512-smooth.o smooth.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicestringpool.o -MD -MP -MF .deps/gmap_avx512-splicestringpool.Tpo -c -o gmap_avx512-splicestringpool.o splicestringpool.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-splicestringpool.o -MD -MP -MF .deps/gmap_avx512-splicestringpool.Tpo -c -o gmap_avx512-splicestringpool.o splicestringpool.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicetrie_build.o -MD -MP -MF .deps/gmap_avx512-splicetrie_build.Tpo -c -o gmap_avx512-splicetrie_build.o splicetrie_build.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-splicetrie_build.o -MD -MP -MF .deps/gmap_avx512-splicetrie_build.Tpo -c -o gmap_avx512-splicetrie_build.o splicetrie_build.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-boyer-moore.o -MD -MP -MF .deps/gmap_avx512-boyer-moore.Tpo -c -o gmap_avx512-boyer-moore.o boyer-moore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-boyer-moore.o -MD -MP -MF .deps/gmap_avx512-boyer-moore.Tpo -c -o gmap_avx512-boyer-moore.o boyer-moore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog.o -MD -MP -MF .deps/gmap_avx512-dynprog.Tpo -c -o gmap_avx512-dynprog.o dynprog.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog.o -MD -MP -MF .deps/gmap_avx512-dynprog.Tpo -c -o gmap_avx512-dynprog.o dynprog.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-splicetrie.o -MD -MP -MF .deps/gmap_avx512-splicetrie.Tpo -c -o gmap_avx512-splicetrie.o splicetrie.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-splicetrie.o -MD -MP -MF .deps/gmap_avx512-splicetrie.Tpo -c -o gmap_avx512-splicetrie.o splicetrie.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_simd.o -MD -MP -MF .deps/gmap_avx512-dynprog_simd.Tpo -c -o gmap_avx512-dynprog_simd.o dynprog_simd.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog_simd.o -MD -MP -MF .deps/gmap_avx512-dynprog_simd.Tpo -c -o gmap_avx512-dynprog_simd.o dynprog_simd.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_single.o -MD -MP -MF .deps/gmap_avx512-dynprog_single.Tpo -c -o gmap_avx512-dynprog_single.o dynprog_single.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog_single.o -MD -MP -MF .deps/gmap_avx512-dynprog_single.Tpo -c -o gmap_avx512-dynprog_single.o dynprog_single.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_genome.o -MD -MP -MF .deps/gmap_avx512-dynprog_genome.Tpo -c -o gmap_avx512-dynprog_genome.o dynprog_genome.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog_genome.o -MD -MP -MF .deps/gmap_avx512-dynprog_genome.Tpo -c -o gmap_avx512-dynprog_genome.o dynprog_genome.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_cdna.o -MD -MP -MF .deps/gmap_avx512-dynprog_cdna.Tpo -c -o gmap_avx512-dynprog_cdna.o dynprog_cdna.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog_cdna.o -MD -MP -MF .deps/gmap_avx512-dynprog_cdna.Tpo -c -o gmap_avx512-dynprog_cdna.o dynprog_cdna.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-dynprog_end.o -MD -MP -MF .deps/gmap_avx512-dynprog_end.Tpo -c -o gmap_avx512-dynprog_end.o dynprog_end.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-dynprog_end.o -MD -MP -MF .deps/gmap_avx512-dynprog_end.Tpo -c -o gmap_avx512-dynprog_end.o dynprog_end.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-translation.o -MD -MP -MF .deps/gmap_avx512-translation.Tpo -c -o gmap_avx512-translation.o translation.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-translation.o -MD -MP -MF .deps/gmap_avx512-translation.Tpo -c -o gmap_avx512-translation.o translation.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-changepoint.o -MD -MP -MF .deps/gmap_avx512-changepoint.Tpo -c -o gmap_avx512-changepoint.o changepoint.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-changepoint.o -MD -MP -MF .deps/gmap_avx512-changepoint.Tpo -c -o gmap_avx512-changepoint.o changepoint.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-pbinom.o -MD -MP -MF .deps/gmap_avx512-pbinom.Tpo -c -o gmap_avx512-pbinom.o pbinom.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-pbinom.o -MD -MP -MF .deps/gmap_avx512-pbinom.Tpo -c -o gmap_avx512-pbinom.o pbinom.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-stage3.o -MD -MP -MF .deps/gmap_avx512-stage3.Tpo -c -o gmap_avx512-stage3.o stage3.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-stage3.o -MD -MP -MF .deps/gmap_avx512-stage3.Tpo -c -o gmap_avx512-stage3.o stage3.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-request.o -MD -MP -MF .deps/gmap_avx512-request.Tpo -c -o gmap_avx512-request.o request.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-request.o -MD -MP -MF .deps/gmap_avx512-request.Tpo -c -o gmap_avx512-request.o request.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-result.o -MD -MP -MF .deps/gmap_avx512-result.Tpo -c -o gmap_avx512-result.o result.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-result.o -MD -MP -MF .deps/gmap_avx512-result.Tpo -c -o gmap_avx512-result.o result.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-output.o -MD -MP -MF .deps/gmap_avx512-output.Tpo -c -o gmap_avx512-output.o output.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-output.o -MD -MP -MF .deps/gmap_avx512-output.Tpo -c -o gmap_avx512-output.o output.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-inbuffer.o -MD -MP -MF .deps/gmap_avx512-inbuffer.Tpo -c -o gmap_avx512-inbuffer.o inbuffer.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-inbuffer.o -MD -MP -MF .deps/gmap_avx512-inbuffer.Tpo -c -o gmap_avx512-inbuffer.o inbuffer.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-samheader.o -MD -MP -MF .deps/gmap_avx512-samheader.Tpo -c -o gmap_avx512-samheader.o samheader.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-samheader.o -MD -MP -MF .deps/gmap_avx512-samheader.Tpo -c -o gmap_avx512-samheader.o samheader.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-outbuffer.o -MD -MP -MF .deps/gmap_avx512-outbuffer.Tpo -c -o gmap_avx512-outbuffer.o outbuffer.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-outbuffer.o -MD -MP -MF .deps/gmap_avx512-outbuffer.Tpo -c -o gmap_avx512-outbuffer.o outbuffer.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-datadir.o -MD -MP -MF .deps/gmap_avx512-datadir.Tpo -c -o gmap_avx512-datadir.o datadir.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-datadir.o -MD -MP -MF .deps/gmap_avx512-datadir.Tpo -c -o gmap_avx512-datadir.o datadir.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-chimera.o -MD -MP -MF .deps/gmap_avx512-chimera.Tpo -c -o gmap_avx512-chimera.o chimera.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-chimera.o -MD -MP -MF .deps/gmap_avx512-chimera.Tpo -c -o gmap_avx512-chimera.o chimera.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-parserange.o -MD -MP -MF .deps/gmap_avx512-parserange.Tpo -c -o gmap_avx512-parserange.o parserange.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-parserange.o -MD -MP -MF .deps/gmap_avx512-parserange.Tpo -c -o gmap_avx512-parserange.o parserange.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getopt1.o -MD -MP -MF .deps/gmap_avx512-getopt1.Tpo -c -o gmap_avx512-getopt1.o getopt1.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-getopt1.o -MD -MP -MF .deps/gmap_avx512-getopt1.Tpo -c -o gmap_avx512-getopt1.o getopt1.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getline.o -MD -MP -MF .deps/gmap_avx512-getline.Tpo -c -o gmap_avx512-getline.o getline.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-getline.o -MD -MP -MF .deps/gmap_avx512-getline.Tpo -c -o gmap_avx512-getline.o getline.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-getopt.o -MD -MP -MF .deps/gmap_avx512-getopt.Tpo -c -o gmap_avx512-getopt.o getopt.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-getopt.o -MD -MP -MF .deps/gmap_avx512-getopt.Tpo -c -o gmap_avx512-getopt.o getopt.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmap_avx512-gmap.o -MD -MP -MF .deps/gmap_avx512-gmap.Tpo -c -o gmap_avx512-gmap.o gmap.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmap_avx512-gmap.o -MD -MP -MF .deps/gmap_avx512-gmap.Tpo -c -o gmap_avx512-gmap.o gmap.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-except.o -MD -MP -MF .deps/gmapl_avx512-except.Tpo -c -o gmapl_avx512-except.o except.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-except.o -MD -MP -MF .deps/gmapl_avx512-except.Tpo -c -o gmapl_avx512-except.o except.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-assert.o -MD -MP -MF .deps/gmapl_avx512-assert.Tpo -c -o gmapl_avx512-assert.o assert.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-assert.o -MD -MP -MF .deps/gmapl_avx512-assert.Tpo -c -o gmapl_avx512-assert.o assert.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-mem.o -MD -MP -MF .deps/gmapl_avx512-mem.Tpo -c -o gmapl_avx512-mem.o mem.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-mem.o -MD -MP -MF .deps/gmapl_avx512-mem.Tpo -c -o gmapl_avx512-mem.o mem.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-intlist.o -MD -MP -MF .deps/gmapl_avx512-intlist.Tpo -c -o gmapl_avx512-intlist.o intlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-intlist.o -MD -MP -MF .deps/gmapl_avx512-intlist.Tpo -c -o gmapl_avx512-intlist.o intlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-uintlist.o -MD -MP -MF .deps/gmapl_avx512-uintlist.Tpo -c -o gmapl_avx512-uintlist.o uintlist.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-uintlist.o -MD -MP -MF .deps/gmapl_avx512-uintlist.Tpo -c -o gmapl_avx512-uintlist.o uintlist.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-uint8list.o -MD -MP -MF .deps/gmapl_avx512-uint8list.Tpo -c -o gmapl_avx512-uint8list.o uint8list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-uint8list.o -MD -MP -MF .deps/gmapl_avx512-uint8list.Tpo -c -o gmapl_avx512-uint8list.o uint8list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-list.o -MD -MP -MF .deps/gmapl_avx512-list.Tpo -c -o gmapl_avx512-list.o list.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-list.o -MD -MP -MF .deps/gmapl_avx512-list.Tpo -c -o gmapl_avx512-list.o list.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bigendian.o -MD -MP -MF .deps/gmapl_avx512-bigendian.Tpo -c -o gmapl_avx512-bigendian.o bigendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-bigendian.o -MD -MP -MF .deps/gmapl_avx512-bigendian.Tpo -c -o gmapl_avx512-bigendian.o bigendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-littleendian.o -MD -MP -MF .deps/gmapl_avx512-littleendian.Tpo -c -o gmapl_avx512-littleendian.o littleendian.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-littleendian.o -MD -MP -MF .deps/gmapl_avx512-littleendian.Tpo -c -o gmapl_avx512-littleendian.o littleendian.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-univinterval.o -MD -MP -MF .deps/gmapl_avx512-univinterval.Tpo -c -o gmapl_avx512-univinterval.o univinterval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-univinterval.o -MD -MP -MF .deps/gmapl_avx512-univinterval.Tpo -c -o gmapl_avx512-univinterval.o univinterval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-stopwatch.o -MD -MP -MF .deps/gmapl_avx512-stopwatch.Tpo -c -o gmapl_avx512-stopwatch.o stopwatch.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-stopwatch.o -MD -MP -MF .deps/gmapl_avx512-stopwatch.Tpo -c -o gmapl_avx512-stopwatch.o stopwatch.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-interval.o -MD -MP -MF .deps/gmapl_avx512-interval.Tpo -c -o gmapl_avx512-interval.o interval.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-interval.o -MD -MP -MF .deps/gmapl_avx512-interval.Tpo -c -o gmapl_avx512-interval.o interval.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-semaphore.o -MD -MP -MF .deps/gmapl_avx512-semaphore.Tpo -c -o gmapl_avx512-semaphore.o semaphore.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-semaphore.o -MD -MP -MF .deps/gmapl_avx512-semaphore.Tpo -c -o gmapl_avx512-semaphore.o semaphore.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-access.o -MD -MP -MF .deps/gmapl_avx512-access.Tpo -c -o gmapl_avx512-access.o access.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-access.o -MD -MP -MF .deps/gmapl_avx512-access.Tpo -c -o gmapl_avx512-access.o access.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-iit-read.o -MD -MP -MF .deps/gmapl_avx512-iit-read.Tpo -c -o gmapl_avx512-iit-read.o iit-read.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-iit-read.o -MD -MP -MF .deps/gmapl_avx512-iit-read.Tpo -c -o gmapl_avx512-iit-read.o iit-read.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-filestring.o -MD -MP -MF .deps/gmapl_avx512-filestring.Tpo -c -o gmapl_avx512-filestring.o filestring.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-filestring.o -MD -MP -MF .deps/gmapl_avx512-filestring.Tpo -c -o gmapl_avx512-filestring.o filestring.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-iit-read-univ.o -MD -MP -MF .deps/gmapl_avx512-iit-read-univ.Tpo -c -o gmapl_avx512-iit-read-univ.o iit-read-univ.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-iit-read-univ.o -MD -MP -MF .deps/gmapl_avx512-iit-read-univ.Tpo -c -o gmapl_avx512-iit-read-univ.o iit-read-univ.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-md5.o -MD -MP -MF .deps/gmapl_avx512-md5.Tpo -c -o gmapl_avx512-md5.o md5.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-md5.o -MD -MP -MF .deps/gmapl_avx512-md5.Tpo -c -o gmapl_avx512-md5.o md5.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-bzip2.o -MD -MP -MF .deps/gmapl_avx512-bzip2.Tpo -c -o gmapl_avx512-bzip2.o bzip2.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-bzip2.o -MD -MP -MF .deps/gmapl_avx512-bzip2.Tpo -c -o gmapl_avx512-bzip2.o bzip2.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-fopen.o -MD -MP -MF .deps/gmapl_avx512-fopen.Tpo -c -o gmapl_avx512-fopen.o fopen.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-fopen.o -MD -MP -MF .deps/gmapl_avx512-fopen.Tpo -c -o gmapl_avx512-fopen.o fopen.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-sequence.o -MD -MP -MF .deps/gmapl_avx512-sequence.Tpo -c -o gmapl_avx512-sequence.o sequence.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-sequence.o -MD -MP -MF .deps/gmapl_avx512-sequence.Tpo -c -o gmapl_avx512-sequence.o sequence.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-reader.o -MD -MP -MF .deps/gmapl_avx512-reader.Tpo -c -o gmapl_avx512-reader.o reader.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-reader.o -MD -MP -MF .deps/gmapl_avx512-reader.Tpo -c -o gmapl_avx512-reader.o reader.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-compress.o -MD -MP -MF .deps/gmapl_avx512-compress.Tpo -c -o gmapl_avx512-compress.o compress.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-compress.o -MD -MP -MF .deps/gmapl_avx512-compress.Tpo -c -o gmapl_avx512-compress.o compress.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-genomicpos.o -MD -MP -MF .deps/gmapl_avx512-genomicpos.Tpo -c -o gmapl_avx512-genomicpos.o genomicpos.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -O2 -march=native -isystem/projects/btl_scratch/sjackman/brew/include | |
| superenv executed: gcc-5 -pipe -w -O2 -march=native -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -fomit-frame-pointer -MT gmapl_avx512-genomicpos.o -MD -MP -MF .deps/gmapl_avx512-genomicpos.Tpo -c -o gmapl_avx512-genomicpos.o genomicpos.c -isystem/projects/btl_scratch/sjackman/brew/include | |
| gcc-5 called with: -DHAVE_CONFIG_H -I. -pthread -DTARGET="x86_64-unknown-linux-gnu" -DGMAPDB="/projects/btl_scratch/sjackman/brew/Cellar/gmap-gsnap/2019-03-15/share" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -mavx512f -mavx512cd -O3 -fomit-frame-pointer -MT gmapl_avx512-gbuffer.o -MD -MP -MF .deps/gmapl_avx512-gbuffer.Tpo -c -o gmapl_avx512-gbuffer.o gbuffer. |
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