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| docker run -it --rm \ | |
| -v "$(pwd)/geotagged-images:/code/images" \ | |
| -v "$(pwd)/odm_orthophoto:/code/odm_orthophoto" \ | |
| -v "$(pwd)/settings.yaml:/code/settings.yaml" \ | |
| -v "$(pwd)/odm_texturing:/code/odm_texturing" \ | |
| opendronemap/odm --fast-orthophoto | tee 2019-09-01-take8.log | |
| =================== | |
| [INFO] Fast orthophoto is turned on, automatically setting --skip-3dmodel | |
| [INFO] Initializing OpenDroneMap app - Sun Sep 01 17:56:43 2019 | |
| [INFO] ============== | |
| [INFO] build_overviews: False | |
| [INFO] cameras: {} | |
| [INFO] crop: 3 | |
| [INFO] debug: False | |
| [INFO] dem_decimation: 1 | |
| [INFO] dem_euclidean_map: False | |
| [INFO] dem_gapfill_steps: 3 | |
| [INFO] dem_resolution: 5 | |
| [INFO] depthmap_resolution: 640 | |
| [INFO] dsm: False | |
| [INFO] dtm: False | |
| [INFO] end_with: odm_orthophoto | |
| [INFO] fast_orthophoto: True | |
| [INFO] force_gps: False | |
| [INFO] gcp: None | |
| [INFO] ignore_gsd: False | |
| [INFO] matcher_distance: 0 | |
| [INFO] matcher_neighbors: 8 | |
| [INFO] max_concurrency: 6 | |
| [INFO] merge: all | |
| [INFO] mesh_octree_depth: 11 | |
| [INFO] mesh_point_weight: 4 | |
| [INFO] mesh_samples: 1.0 | |
| [INFO] mesh_size: 598765 | |
| [INFO] min_num_features: 8000 | |
| [INFO] mve_confidence: 0.6 | |
| [INFO] name: code | |
| [INFO] opensfm_depthmap_method: PATCH_MATCH | |
| [INFO] opensfm_depthmap_min_consistent_views: 3 | |
| [INFO] opensfm_depthmap_min_patch_sd: 1 | |
| [INFO] orthophoto_bigtiff: IF_SAFER | |
| [INFO] orthophoto_compression: DEFLATE | |
| [INFO] orthophoto_cutline: False | |
| [INFO] orthophoto_no_tiled: False | |
| [INFO] orthophoto_resolution: 5 | |
| [INFO] pc_classify: False | |
| [INFO] pc_csv: False | |
| [INFO] pc_ept: False | |
| [INFO] pc_filter: 2.5 | |
| [INFO] pc_las: False | |
| [INFO] project_path: / | |
| [INFO] rerun: None | |
| [INFO] rerun_all: False | |
| [INFO] rerun_from: None | |
| [INFO] resize_to: 2048 | |
| [INFO] skip_3dmodel: True | |
| [INFO] sm_cluster: None | |
| [INFO] smrf_scalar: 1.25 | |
| [INFO] smrf_slope: 0.15 | |
| [INFO] smrf_threshold: 0.5 | |
| [INFO] smrf_window: 18.0 | |
| [INFO] split: 999999 | |
| [INFO] split_overlap: 150 | |
| [INFO] texturing_data_term: gmi | |
| [INFO] texturing_keep_unseen_faces: False | |
| [INFO] texturing_nadir_weight: 30 | |
| [INFO] texturing_outlier_removal_type: gauss_clamping | |
| [INFO] texturing_skip_global_seam_leveling: False | |
| [INFO] texturing_skip_hole_filling: False | |
| [INFO] texturing_skip_local_seam_leveling: False | |
| [INFO] texturing_skip_visibility_test: False | |
| [INFO] texturing_tone_mapping: none | |
| [INFO] time: False | |
| [INFO] use_3dmesh: False | |
| [INFO] use_exif: False | |
| [INFO] use_fixed_camera_params: False | |
| [INFO] use_hybrid_bundle_adjustment: False | |
| [INFO] use_opensfm_dense: False | |
| [INFO] verbose: True | |
| [INFO] ============== | |
| [INFO] Running dataset stage | |
| [INFO] Loading dataset from: /code/images | |
| [INFO] Loading 2 images | |
| [INFO] Wrote images database: /code/images.json | |
| [INFO] Found 2 usable images | |
| [INFO] Parsing SRS header: WGS84 UTM 17N | |
| [INFO] Finished dataset stage | |
| [INFO] Running split stage | |
| [INFO] Normal dataset, will process all at once. | |
| [INFO] Finished split stage | |
| [INFO] Running merge stage | |
| [INFO] Normal dataset, nothing to merge. | |
| [INFO] Finished merge stage | |
| [INFO] Running opensfm stage | |
| [INFO] Altitude data detected, enabling it for GPS alignment | |
| [INFO] ['use_exif_size: no', 'feature_process_size: 2048', 'feature_min_frames: 8000', 'processes: 6', 'matching_gps_neighbors: 8', 'matching_gps_distance: 0', 'depthmap_method: PATCH_MATCH', 'depthmap_resolution: 640', 'depthmap_min_patch_sd: 1', 'depthmap_min_consistent_views: 3', 'optimize_camera_parameters: yes', 'undistorted_image_format: png', 'bundle_outlier_filtering_type: AUTO', 'use_altitude_tag: yes', 'align_method: naive'] | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm extract_metadata "/code/opensfm" | |
| 2019-09-01 17:56:44,534 INFO: Extracting EXIF for 14124.jpg | |
| 2019-09-01 17:56:44,598 INFO: Extracting EXIF for 14125.jpg | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm detect_features "/code/opensfm" | |
| 2019-09-01 17:56:45,852 INFO: Extracting ROOT_HAHOG features for image 14124.jpg | |
| 2019-09-01 17:56:46,472 INFO: Extracting ROOT_HAHOG features for image 14125.jpg | |
| 2019-09-01 17:56:53,375 DEBUG: Found 11104 points in 5.2177271843s | |
| 2019-09-01 17:56:53,693 DEBUG: Found 11328 points in 5.53047299385s | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm match_features "/code/opensfm" | |
| 2019-09-01 17:56:55,381 INFO: Matching 1 image pairs | |
| 2019-09-01 17:56:55,928 INFO: Matching 14124.jpg - 1 / 2 | |
| 2019-09-01 17:56:56,408 INFO: Matching 14125.jpg - 2 / 2 | |
| 2019-09-01 17:56:59,254 DEBUG: 14124.jpg - 14125.jpg has 1367 candidate matches | |
| 2019-09-01 17:56:59,261 DEBUG: Robust matching time : 0.00729084014893s | |
| 2019-09-01 17:56:59,261 DEBUG: Full matching 1330 / 1367, time: 3.33336091042s | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm create_tracks "/code/opensfm" | |
| 2019-09-01 17:57:00,032 INFO: reading features | |
| 2019-09-01 17:57:00,081 DEBUG: Merging features onto tracks | |
| 2019-09-01 17:57:00,094 DEBUG: Good tracks: 1330 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm reconstruct "/code/opensfm" | |
| 2019-09-01 17:57:00,868 INFO: Starting incremental reconstruction | |
| 2019-09-01 17:57:00,883 INFO: Starting reconstruction with 14124.jpg and 14125.jpg | |
| 2019-09-01 17:57:01,004 INFO: Two-view reconstruction inliers: 1330 / 1330 | |
| 2019-09-01 17:57:01,146 INFO: Triangulated: 1330 | |
| 2019-09-01 17:57:01,185 DEBUG: Ceres Solver Report: Iterations: 3, Initial cost: 7.331754e+02, Final cost: 7.310280e+02, Termination: CONVERGENCE | |
| 2019-09-01 17:57:01,336 DEBUG: Ceres Solver Report: Iterations: 3, Initial cost: 7.314140e+02, Final cost: 7.301887e+02, Termination: CONVERGENCE | |
| 2019-09-01 17:57:02,576 DEBUG: Ceres Solver Report: Iterations: 51, Initial cost: 1.462780e+03, Final cost: 1.456044e+03, Termination: NO_CONVERGENCE | |
| 2019-09-01 17:57:02,632 INFO: Removed outliers: 76 | |
| 2019-09-01 17:57:02,713 INFO: ------------------------------------------------------- | |
| 2019-09-01 17:57:03,993 DEBUG: Ceres Solver Report: Iterations: 18, Initial cost: 1.607093e+01, Final cost: 7.843811e+00, Termination: CONVERGENCE | |
| 2019-09-01 17:57:04,024 INFO: Removed outliers: 13 | |
| 2019-09-01 17:57:04,081 INFO: {'average_track_length': 2.0, 'points_count': 1274, 'observations_count': 2548, 'cameras_count': 2, 'average_track_length_notwo': -1} | |
| 2019-09-01 17:57:04,082 INFO: Reconstruction 0: 2 images, 1274 points | |
| 2019-09-01 17:57:04,082 INFO: 1 partial reconstructions in total. | |
| [INFO] Updating /code/opensfm/config.yaml | |
| [INFO] undistorted_image_max_size: 5467 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm undistort "/code/opensfm" | |
| 2019-09-01 17:57:05,360 DEBUG: Undistorting the reconstruction | |
| 2019-09-01 17:57:06,091 DEBUG: Undistorting image 14124.jpg | |
| 2019-09-01 17:57:06,623 DEBUG: Undistorting image 14125.jpg | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_visualsfm --undistorted "/code/opensfm" | |
| 2019-09-01 17:57:12,017 DEBUG: STREAM 'IHDR' 16 13 | |
| 2019-09-01 17:57:12,017 DEBUG: STREAM 'IDAT' 41 8192 | |
| 2019-09-01 17:57:12,019 DEBUG: STREAM 'IHDR' 16 13 | |
| 2019-09-01 17:57:12,019 DEBUG: STREAM 'IDAT' 41 8192 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_ply --no-cameras "/code/opensfm" | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/export_bundler "/code/opensfm" | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_geocoords --transformation --proj '+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs +type=crs' "/code/opensfm" | |
| [INFO] Finished opensfm stage | |
| [INFO] Running odm_filterpoints stage | |
| [INFO] Filtering point cloud (statistical, meanK 16, standard deviation 2.5) | |
| [INFO] running /code/build/bin/odm_filterpoints -inputFile /code/opensfm/reconstruction.ply -outputFile /code/odm_filterpoints/point_cloud.ply -sd 2.5 -meank 16 -verbose | |
| Running with parameters: | |
| --inputFile /code/opensfm/reconstruction.ply | |
| --outputFile /code/odm_filterpoints/point_cloud.ply | |
| --sd 2.500000 | |
| --meank 16.000000 | |
| --verbose | |
| Filtering point cloud... | |
| Done! | |
| [INFO] Finished odm_filterpoints stage | |
| [INFO] Running odm_meshing stage | |
| [INFO] Writing ODM 2.5D Mesh file in: /code/odm_meshing/odm_25dmesh.ply | |
| [93m[WARNING] Cannot calculate GSD, using requested resolution of 5.0 | |
| [INFO] ODM 2.5D DSM resolution: 0.2 | |
| [INFO] Created temporary directory: /code/odm_meshing/tmp | |
| [INFO] Creating DSM for 2.5D mesh | |
| [INFO] running pdal info /code/odm_filterpoints/point_cloud.ply > /tmp/tmpSYcbRn.json | |
| [INFO] Point cloud bounds are [minx: -997.1917114, maxx: 751.9190674] [miny: -1371.436523, maxy: 1403.452271] | |
| [INFO] DEM resolution is (8746, 13875), max tile size is 4096, will split DEM generation into 9 tiles | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y0.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y1.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y2.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y1.tif (max, radius: 0.565685424949, resolution: 0.2)[INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y0.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Pipeline file: /tmp/tmpLCci99.json | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y2.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Pipeline file: /tmp/tmpnxJIhM.json | |
| [INFO] running pdal pipeline -i /tmp/tmpnxJIhM.json | |
| [INFO] running pdal pipeline -i /tmp/tmpLCci99.json | |
| [INFO] Pipeline file: /tmp/tmpJN91NL.json | |
| [INFO] running pdal pipeline -i /tmp/tmpJN91NL.json | |
| [INFO] Pipeline file: /tmp/tmpi90Yet.json | |
| [INFO] Pipeline file: /tmp/tmp28WWZe.json | |
| [INFO] Pipeline file: /tmp/tmpMY6yN7.json | |
| [INFO] running pdal pipeline -i /tmp/tmpMY6yN7.json | |
| [INFO] running pdal pipeline -i /tmp/tmp28WWZe.json | |
| [INFO] running pdal pipeline -i /tmp/tmpi90Yet.json | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y0.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Pipeline file: /tmp/tmpAKsRuG.json | |
| [INFO] running pdal pipeline -i /tmp/tmpAKsRuG.json | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y1.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Pipeline file: /tmp/tmpNJNFpx.json | |
| [INFO] running pdal pipeline -i /tmp/tmpNJNFpx.json | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y2.tif (max, radius: 0.565685424949, resolution: 0.2) | |
| [INFO] Pipeline file: /tmp/tmp3cFZ95.json | |
| [INFO] running pdal pipeline -i /tmp/tmp3cFZ95.json | |
| [INFO] running gdalbuildvrt "/code/odm_meshing/tmp/tiles.vrt" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y0.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y1.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x0_y2.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y0.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y1.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x1_y2.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y0.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y1.tif" "/code/odm_meshing/tmp/mesh_dsm_r0.565685424949_x2_y2.tif" | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% /code/odm_meshing/tmp/tiles.vrt /code/odm_meshing/tmp/tiles.tmp.tif | |
| Input file size is 8746, 13875 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% -outsize 10% 0 /code/odm_meshing/tmp/tiles.tmp.tif /code/odm_meshing/tmp/tiles.small.tif | |
| Input file size is 8746, 13875 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_fillnodata.py -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% -b 1 -of GTiff /code/odm_meshing/tmp/tiles.small.tif /code/odm_meshing/tmp/tiles.small_filled.tif | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdalbuildvrt -resolution highest -r bilinear "/code/odm_meshing/tmp/merged.vrt" "/code/odm_meshing/tmp/tiles.small_filled.tif" "/code/odm_meshing/tmp/tiles.tmp.tif" | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% /code/odm_meshing/tmp/merged.vrt /code/odm_meshing/tmp/tiles.tif | |
| Input file size is 8746, 13875 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] Completed mesh_dsm.tif in 0:00:14.065527 | |
| [INFO] Sampling points from DSM: /code/odm_meshing/tmp/mesh_dsm.tif | |
| [INFO] running /code/SuperBuild/src/dem2points/dem2points -inputFile /code/odm_meshing/tmp/mesh_dsm.tif -outputFile /code/odm_meshing/tmp/dsm_points.ply -skirtHeightThreshold 1.5 -skirtIncrements 0.2 -skirtHeightCap 100 -verbose | |
| Running with parameters: | |
| --inputFile /code/odm_meshing/tmp/mesh_dsm.tif | |
| --outputFile /code/odm_meshing/tmp/dsm_points.ply | |
| --skirtHeightThreshold 1.500000 | |
| --skirtIncrements 0.200000 | |
| --skirtHeightCap 100.000000 | |
| --verbose | |
| Raster Size is 8746x13875 | |
| Extent is (-997.191711, 752.008289), (-1371.510660, 1403.489340) | |
| Read nodata value: -9999 | |
| Calculating skirts and vertex count... 299965 skirt points will be added | |
| Total vertices: 110833945 | |
| Sampling and writing to file... done! | |
| [INFO] running /code/SuperBuild/src/PoissonRecon/Bin/Linux/PoissonRecon --in /code/odm_meshing/tmp/dsm_points.ply --out /code/odm_meshing/odm_25dmesh.dirty.ply --depth 11 --pointWeight 4 --samplesPerNode 1.0 --threads 5 --linearFit --verbose | |
| ************************************************************* | |
| ************************************************************* | |
| ** Running Screened Poisson Reconstruction (Version 12.00) ** | |
| ************************************************************* | |
| ************************************************************* | |
| --in /code/odm_meshing/tmp/dsm_points.ply | |
| --depth 11 | |
| --out /code/odm_meshing/odm_25dmesh.dirty.ply | |
| --verbose | |
| --samplesPerNode 1.000000 | |
| --pointWeight 4.000000 | |
| --threads 5 | |
| --linearFit | |
| Input Points / Samples: 110833945 / 2136596 | |
| # Read input into tree: 92.4 (s), 262.8 (MB) / 262.8 (MB) / 0.0 (MB) | |
| # Got kernel density: 0.8 (s), 332.0 (MB) / 332.0 (MB) / 0.5 (MB) | |
| # Got normal field: 4.5 (s), 753.2 (MB) / 753.2 (MB) / 0.0 (MB) | |
| Point weight / Estimated Area: 4.71665e-09 / 0.522765 | |
| # Finalized tree: 4.2 (s), 1214.2 (MB) / 1214.2 (MB) / 0.0 (MB) | |
| # Set FEM constraints: 8.3 (s), 987.5 (MB) / 1214.2 (MB) / 0.0 (MB) | |
| #Set point constraints: 1.7 (s), 987.5 (MB) / 1214.2 (MB) / 0.5 (MB) | |
| Leaf Nodes / Active Nodes / Ghost Nodes: 12491935 / 14275776 / 721 | |
| Memory Usage: 987.457 MB | |
| Cycle[0] Depth[ 0/11]: Updated constraints / Got system / Solved in: 0.002 / 0.001 / 0.000 (1058.688 MB) Nodes: 8 | |
| Cycle[0] Depth[ 1/11]: Updated constraints / Got system / Solved in: 0.001 / 0.000 / 0.000 (1058.688 MB) Nodes: 27 | |
| Cycle[0] Depth[ 2/11]: Updated constraints / Got system / Solved in: 0.001 / 0.001 / 0.000 (1059.387 MB) Nodes: 125 | |
| Cycle[0] Depth[ 3/11]: Updated constraints / Got system / Solved in: 0.001 / 0.005 / 0.001 (1059.699 MB) Nodes: 729 | |
| Cycle[0] Depth[ 4/11]: Updated constraints / Got system / Solved in: 0.002 / 0.010 / 0.003 (1060.211 MB) Nodes: 4913 | |
| Cycle[0] Depth[ 5/11]: Updated constraints / Got system / Solved in: 0.003 / 0.028 / 0.017 (1062.527 MB) Nodes: 35937 | |
| Cycle[0] Depth[ 6/11]: Updated constraints / Got system / Solved in: 0.004 / 0.012 / 0.009 (1065.102 MB) Nodes: 31336 | |
| Cycle[0] Depth[ 7/11]: Updated constraints / Got system / Solved in: 0.007 / 0.037 / 0.028 (1078.234 MB) Nodes: 100768 | |
| Cycle[0] Depth[ 8/11]: Updated constraints / Got system / Solved in: 0.022 / 0.116 / 0.100 (1124.820 MB) Nodes: 348112 | |
| Cycle[0] Depth[ 9/11]: Updated constraints / Got system / Solved in: 0.060 / 0.370 / 0.379 (1255.215 MB) Nodes: 1208688 | |
| Cycle[0] Depth[10/11]: Updated constraints / Got system / Solved in: 0.215 / 1.371 / 1.344 (1562.227 MB) Nodes: 3858736 | |
| Cycle[0] Depth[11/11]: Updated constraints / Got system / Solved in: 0.223 / 3.060 / 2.889 (1796.172 MB) Nodes: 8659048 | |
| # Linear system solved: 12.7 (s), 1796.2 (MB) / 1796.2 (MB) / 0.0 (MB) | |
| Got average: 0.6 (s), 913.6 (MB) / 1796.2 (MB) / 0.1 (MB) | |
| Iso-Value: 4.986182e-01 = 5.52638e+07 / 1.10834e+08 | |
| Vertices / Polygons: 2269794 / 4538706 | |
| Corners / Vertices / Edges / Surface / Set Table / Copy Finer: 1.8 / 2.0 / 3.4 / 3.3 / 4.4 / 0.5 (s) | |
| # Got triangles: 23.5 (s), 1814.0 (MB) / 1814.0 (MB) / 0.0 (MB) | |
| # Total Solve: 151.4 (s), 1814.0 (MB) | |
| [INFO] running /code/build/bin/odm_cleanmesh -inputFile /code/odm_meshing/odm_25dmesh.dirty.ply -outputFile /code/odm_meshing/odm_25dmesh.ply -removeIslands -decimateMesh 598765 -verbose | |
| Running with parameters: | |
| --inputFile /code/odm_meshing/odm_25dmesh.dirty.ply | |
| --outputFile /code/odm_meshing/odm_25dmesh.ply | |
| --decimateMesh 598765 | |
| --removeIslands | |
| --verbose | |
| Removing islands | |
| Decimating mesh | |
| Current vertex count: 2269794 | |
| Wanted vertex count: 598765 | |
| Target reduction set to 0.736203 | |
| Saving cleaned mesh to file... | |
| OK | |
| [INFO] Finished odm_meshing stage | |
| [INFO] Running mvs_texturing stage | |
| [INFO] Writing MVS Textured file in: /code/odm_texturing_25d/odm_textured_model.obj | |
| [INFO] running /code/SuperBuild/install/bin/texrecon /code/opensfm/reconstruction.nvm /code/odm_meshing/odm_25dmesh.ply /code/odm_texturing_25d/odm_textured_model -d gmi -o gauss_clamping -t none --nadir_mode -n 1073741823 | |
| /code/SuperBuild/install/bin/texrecon (built on Aug 13 2019, 21:43:57) | |
| Load and prepare mesh: | |
| PLY Loader: comment VTK generated PLY File | |
| Reading PLY: 598404 verts... 1196604 faces... done. | |
| Warning: Zero-length normals detected: 8 face normals, 0 vertex normals | |
| Generating texture views: | |
| NVM: Loading file... | |
| NVM: Number of views: 2 | |
| NVM: Number of features: 0 | |
| Loading 100%... done. (Took 4.193s) | |
| Building adjacency graph: | |
| Adding edges 100%... done. (Took 3.119s) | |
| 1794810 total edges. | |
| View selection: | |
| Building BVH from 1196604 faces... done. (Took: 1717 ms) | |
| Calculating face qualities 100%... done. (Took 2.172s) | |
| Postprocessing face infos 100%... done. (Took 0.129s) | |
| Maximum quality of a face within an image: 229.875 | |
| Clamping qualities to 194.54 within normalization. | |
| Writing data cost file... done. | |
| Optimizing: | |
| Time[s] Energy | |
| 1 1173745 | |
| 5 1173745 | |
| 6 1173732 | |
| 7 1173728 | |
| 8 1173727 | |
| 9 1173727 | |
| 9 1173727 | |
| 10 1173727 | |
| 11 1173727 | |
| 12 1173727 | |
| 1170192 faces have not been seen | |
| Took: 18.612s | |
| Generating texture patches: | |
| Running... done. (Took 3.909s) | |
| 969 texture patches. | |
| Running global seam leveling: | |
| Create matrices for optimization... done. | |
| Lhs dimensionality: 21280 x 21280 | |
| Calculating adjustments: | |
| Color channel 0: CG took 79 iterations. Residual is 9.04314e-05 | |
| Color channel 2: CG took 79 iterations. Residual is 9.04314e-05 | |
| Color channel 1: CG took 79 iterations. Residual is 9.04314e-05 | |
| Took 0.05 seconds | |
| Adjusting texture patches 100%... done. (Took 0.11s) | |
| Running local seam leveling: | |
| Blending texture patches 100%... done. (Took 1.52s) | |
| Generating texture atlases: | |
| Sorting texture patches... done. | |
| Working on atlas 1 100%... done. | |
| Finalizing texture atlases... done. (Took: 6.31s) | |
| Building objmodel: | |
| Saving model... done. | |
| Whole texturing procedure took: 45.182s | |
| [INFO] Finished mvs_texturing stage | |
| [INFO] Running odm_georeferencing stage | |
| [INFO] Running georeferencing with OpenSfM transformation matrix | |
| [INFO] running /code/build/bin/odm_georef -bundleFile /code/opensfm/bundle_r000.out -inputTransformFile /code/opensfm/geocoords_transformation.txt -inputCoordFile /code/odm_georeferencing/coords.txt -inputFile /code/odm_texturing_25d/odm_textured_model.obj -outputFile /code/odm_texturing_25d/odm_textured_model_geo.obj -inputPointCloudFile /code/odm_filterpoints/point_cloud.ply -outputPointCloudFile /code/odm_georeferencing/odm_georeferenced_model.laz -outputPointCloudSrs '+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs +type=crs' -verbose -logFile /code/odm_25dgeoreferencing/odm_georeferencing_log.txt -outputTransformFile /code/odm_25dgeoreferencing/odm_georeferencing_transform.txt -georefFileOutputPath /code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt | |
| Log file path was set to: /code/odm_25dgeoreferencing/odm_georeferencing_log.txt | |
| Transform file path was set to: /code/odm_25dgeoreferencing/odm_georeferencing_transform.txt | |
| Georef file output path is set to: /code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt | |
| Missing input in order to use GCP for georeferencing. Using EXIF data instead. | |
| Reading mesh file... | |
| .. mesh file read. | |
| Applying transform to mesh... | |
| .. mesh transformed. | |
| Successfully saved model. | |
| Saving final transform file to '/code/odm_25dgeoreferencing/odm_georeferencing_transform.txt'... | |
| ... final transform saved. | |
| Transforming point cloud... | |
| Point cloud file saved. | |
| Saving georeference system file to '/code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt'... | |
| ... georeference system saved. | |
| [INFO] Calculating cropping area and generating bounds shapefile from point cloud | |
| [INFO] running pdal translate -i "/code/odm_georeferencing/odm_georeferenced_model.laz" -o "/code/odm_georeferencing/odm_georeferenced_model.decimated.las" decimation --filters.decimation.step=40 | |
| [INFO] running pdal info --boundary --filters.hexbin.edge_size=1 --filters.hexbin.threshold=0 /code/odm_georeferencing/odm_georeferenced_model.decimated.las > /code/odm_georeferencing/odm_georeferenced_model.boundary.json | |
| [INFO] running pdal info --summary /code/odm_georeferencing/odm_georeferenced_model.laz > /code/odm_georeferencing/odm_georeferenced_model.summary.json | |
| [INFO] running ogr2ogr -overwrite -f GPKG -a_srs "+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs" /code/odm_georeferencing/odm_georeferenced_model.bounds.gpkg /code/odm_georeferencing/odm_georeferenced_model.bounds.geojson | |
| [INFO] Finished odm_georeferencing stage | |
| [INFO] Running odm_dem stage | |
| [INFO] Classify: False | |
| [INFO] Create DSM: False | |
| [INFO] Create DTM: False | |
| [INFO] DEM input file /code/odm_georeferencing/odm_georeferenced_model.laz found: True | |
| [93m[WARNING] DEM will not be generated | |
| [INFO] Finished odm_dem stage | |
| [INFO] Running odm_orthophoto stage | |
| [93m[WARNING] Cannot calculate GSD, using requested resolution of 5.0 | |
| [INFO] running /code/build/bin/odm_orthophoto -inputFile /code/odm_texturing_25d/odm_textured_model_geo.obj -logFile /code/odm_orthophoto/odm_orthophoto_log.txt -outputFile /code/odm_orthophoto/odm_orthophoto.png -resolution 20.0 -verbose -outputCornerFile /code/odm_orthophoto/odm_orthophoto_corners.txt | |
| Writing corners to: /code/odm_orthophoto/odm_orthophoto_corners.txt | |
| Reading mesh file... | |
| .. mesh file read. | |
| Set boundary to contain entire model. | |
| Local boundary points: | |
| Point 1: -1127.62 -1403.25 | |
| Point 2: -1127.62 1452.93 | |
| Point 3: 921.954 1452.93 | |
| Point 4: 921.954 -1403.25 | |
| Ortho photo bounds x : -1127.62 -> 921.954 | |
| Ortho photo bounds y : -1403.25 -> 1452.93 | |
| Ortho photo area : 5.85394e+06m2 | |
| Ortho photo resolution, width x height : 40992x57124 | |
| New ortho photo resolution, width x height : 40992x57124 | |
| OpenCV Error: Insufficient memory (Failed to allocate 9366508036 bytes) in OutOfMemoryError, file /code/SuperBuild/src/opencv/modules/core/src/alloc.cpp, line 52 | |
| Couldn't allocate enough memory to render the orthophoto (40992x57124 cells = 9366508032 bytes). Try to reduce the -resolution parameter or add more RAM. | |
| Traceback (most recent call last): | |
| File "/code/run.py", line 56, in <module> | |
| app.execute() | |
| File "/code/stages/odm_app.py", line 92, in execute | |
| self.first_stage.run() | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 373, in run | |
| self.next_stage.run(outputs) | |
| File "/code/opendm/types.py", line 354, in run | |
| self.process(self.args, outputs) | |
| File "/code/stages/odm_orthophoto.py", line 65, in process | |
| '-outputCornerFile {corners}'.format(**kwargs)) | |
| File "/code/opendm/system.py", line 76, in run | |
| raise Exception("Child returned {}".format(retcode)) | |
| Exception: Child returned 1 |
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| docker run -it --rm \ | |
| -v "$(pwd)/geotagged-images:/code/images" \ | |
| -v "$(pwd)/odm_orthophoto:/code/odm_orthophoto" \ | |
| -v "$(pwd)/settings.yaml:/code/settings.yaml" \ | |
| -v "$(pwd)/odm_texturing:/code/odm_texturing" \ | |
| opendronemap/odm --fast-orthophoto --orthophoto-resolution 20 | tee 2019-09-01-take9.log | |
| ================== | |
| [INFO] Fast orthophoto is turned on, automatically setting --skip-3dmodel | |
| [INFO] Initializing OpenDroneMap app - Sun Sep 01 18:28:07 2019 | |
| [INFO] ============== | |
| [INFO] build_overviews: False | |
| [INFO] cameras: {} | |
| [INFO] crop: 3 | |
| [INFO] debug: False | |
| [INFO] dem_decimation: 1 | |
| [INFO] dem_euclidean_map: False | |
| [INFO] dem_gapfill_steps: 3 | |
| [INFO] dem_resolution: 5 | |
| [INFO] depthmap_resolution: 640 | |
| [INFO] dsm: False | |
| [INFO] dtm: False | |
| [INFO] end_with: odm_orthophoto | |
| [INFO] fast_orthophoto: True | |
| [INFO] force_gps: False | |
| [INFO] gcp: None | |
| [INFO] ignore_gsd: False | |
| [INFO] matcher_distance: 0 | |
| [INFO] matcher_neighbors: 8 | |
| [INFO] max_concurrency: 6 | |
| [INFO] merge: all | |
| [INFO] mesh_octree_depth: 11 | |
| [INFO] mesh_point_weight: 4 | |
| [INFO] mesh_samples: 1.0 | |
| [INFO] mesh_size: 598765 | |
| [INFO] min_num_features: 8000 | |
| [INFO] mve_confidence: 0.6 | |
| [INFO] name: code | |
| [INFO] opensfm_depthmap_method: PATCH_MATCH | |
| [INFO] opensfm_depthmap_min_consistent_views: 3 | |
| [INFO] opensfm_depthmap_min_patch_sd: 1 | |
| [INFO] orthophoto_bigtiff: IF_SAFER | |
| [INFO] orthophoto_compression: DEFLATE | |
| [INFO] orthophoto_cutline: False | |
| [INFO] orthophoto_no_tiled: False | |
| [INFO] orthophoto_resolution: 20.0 | |
| [INFO] pc_classify: False | |
| [INFO] pc_csv: False | |
| [INFO] pc_ept: False | |
| [INFO] pc_filter: 2.5 | |
| [INFO] pc_las: False | |
| [INFO] project_path: / | |
| [INFO] rerun: None | |
| [INFO] rerun_all: False | |
| [INFO] rerun_from: None | |
| [INFO] resize_to: 2048 | |
| [INFO] skip_3dmodel: True | |
| [INFO] sm_cluster: None | |
| [INFO] smrf_scalar: 1.25 | |
| [INFO] smrf_slope: 0.15 | |
| [INFO] smrf_threshold: 0.5 | |
| [INFO] smrf_window: 18.0 | |
| [INFO] split: 999999 | |
| [INFO] split_overlap: 150 | |
| [INFO] texturing_data_term: gmi | |
| [INFO] texturing_keep_unseen_faces: False | |
| [INFO] texturing_nadir_weight: 30 | |
| [INFO] texturing_outlier_removal_type: gauss_clamping | |
| [INFO] texturing_skip_global_seam_leveling: False | |
| [INFO] texturing_skip_hole_filling: False | |
| [INFO] texturing_skip_local_seam_leveling: False | |
| [INFO] texturing_skip_visibility_test: False | |
| [INFO] texturing_tone_mapping: none | |
| [INFO] time: False | |
| [INFO] use_3dmesh: False | |
| [INFO] use_exif: False | |
| [INFO] use_fixed_camera_params: False | |
| [INFO] use_hybrid_bundle_adjustment: False | |
| [INFO] use_opensfm_dense: False | |
| [INFO] verbose: True | |
| [INFO] ============== | |
| [INFO] Running dataset stage | |
| [INFO] Loading dataset from: /code/images | |
| [INFO] Loading 2 images | |
| [INFO] Wrote images database: /code/images.json | |
| [INFO] Found 2 usable images | |
| [INFO] Parsing SRS header: WGS84 UTM 17N | |
| [INFO] Finished dataset stage | |
| [INFO] Running split stage | |
| [INFO] Normal dataset, will process all at once. | |
| [INFO] Finished split stage | |
| [INFO] Running merge stage | |
| [INFO] Normal dataset, nothing to merge. | |
| [INFO] Finished merge stage | |
| [INFO] Running opensfm stage | |
| [INFO] Altitude data detected, enabling it for GPS alignment | |
| [INFO] ['use_exif_size: no', 'feature_process_size: 2048', 'feature_min_frames: 8000', 'processes: 6', 'matching_gps_neighbors: 8', 'matching_gps_distance: 0', 'depthmap_method: PATCH_MATCH', 'depthmap_resolution: 640', 'depthmap_min_patch_sd: 1', 'depthmap_min_consistent_views: 3', 'optimize_camera_parameters: yes', 'undistorted_image_format: png', 'bundle_outlier_filtering_type: AUTO', 'use_altitude_tag: yes', 'align_method: naive'] | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm extract_metadata "/code/opensfm" | |
| 2019-09-01 18:28:07,688 INFO: Extracting EXIF for 14124.jpg | |
| 2019-09-01 18:28:07,704 INFO: Extracting EXIF for 14125.jpg | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm detect_features "/code/opensfm" | |
| 2019-09-01 18:28:08,767 INFO: Extracting ROOT_HAHOG features for image 14124.jpg | |
| 2019-09-01 18:28:09,186 INFO: Extracting ROOT_HAHOG features for image 14125.jpg | |
| 2019-09-01 18:28:14,453 DEBUG: Found 11328 points in 4.3309071064s | |
| 2019-09-01 18:28:14,750 DEBUG: Found 11104 points in 4.61381816864s | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm match_features "/code/opensfm" | |
| 2019-09-01 18:28:16,330 INFO: Matching 1 image pairs | |
| 2019-09-01 18:28:16,783 INFO: Matching 14124.jpg - 1 / 2 | |
| 2019-09-01 18:28:17,159 INFO: Matching 14125.jpg - 2 / 2 | |
| 2019-09-01 18:28:19,849 DEBUG: 14124.jpg - 14125.jpg has 1367 candidate matches | |
| 2019-09-01 18:28:19,850 DEBUG: Robust matching time : 0.000653982162476s | |
| 2019-09-01 18:28:19,850 DEBUG: Full matching 1330 / 1367, time: 3.06679916382s | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm create_tracks "/code/opensfm" | |
| 2019-09-01 18:28:20,540 INFO: reading features | |
| 2019-09-01 18:28:20,589 DEBUG: Merging features onto tracks | |
| 2019-09-01 18:28:20,601 DEBUG: Good tracks: 1330 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm reconstruct "/code/opensfm" | |
| 2019-09-01 18:28:21,217 INFO: Starting incremental reconstruction | |
| 2019-09-01 18:28:21,231 INFO: Starting reconstruction with 14124.jpg and 14125.jpg | |
| 2019-09-01 18:28:21,360 INFO: Two-view reconstruction inliers: 1330 / 1330 | |
| 2019-09-01 18:28:21,468 INFO: Triangulated: 1330 | |
| 2019-09-01 18:28:21,507 DEBUG: Ceres Solver Report: Iterations: 3, Initial cost: 7.331754e+02, Final cost: 7.310280e+02, Termination: CONVERGENCE | |
| 2019-09-01 18:28:21,624 DEBUG: Ceres Solver Report: Iterations: 3, Initial cost: 7.314140e+02, Final cost: 7.301887e+02, Termination: CONVERGENCE | |
| 2019-09-01 18:28:22,057 DEBUG: Ceres Solver Report: Iterations: 51, Initial cost: 1.462780e+03, Final cost: 1.456044e+03, Termination: NO_CONVERGENCE | |
| 2019-09-01 18:28:22,075 INFO: Removed outliers: 76 | |
| 2019-09-01 18:28:22,082 INFO: ------------------------------------------------------- | |
| 2019-09-01 18:28:22,295 DEBUG: Ceres Solver Report: Iterations: 18, Initial cost: 1.607093e+01, Final cost: 7.843811e+00, Termination: CONVERGENCE | |
| 2019-09-01 18:28:22,324 INFO: Removed outliers: 13 | |
| 2019-09-01 18:28:22,345 INFO: {'average_track_length': 2.0, 'points_count': 1274, 'observations_count': 2548, 'cameras_count': 2, 'average_track_length_notwo': -1} | |
| 2019-09-01 18:28:22,345 INFO: Reconstruction 0: 2 images, 1274 points | |
| 2019-09-01 18:28:22,346 INFO: 1 partial reconstructions in total. | |
| [INFO] Updating /code/opensfm/config.yaml | |
| [INFO] undistorted_image_max_size: 5467 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm undistort "/code/opensfm" | |
| 2019-09-01 18:28:23,060 DEBUG: Undistorting the reconstruction | |
| 2019-09-01 18:28:23,635 DEBUG: Undistorting image 14124.jpg | |
| 2019-09-01 18:28:24,059 DEBUG: Undistorting image 14125.jpg | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_visualsfm --undistorted "/code/opensfm" | |
| 2019-09-01 18:28:28,338 DEBUG: STREAM 'IHDR' 16 13 | |
| 2019-09-01 18:28:28,338 DEBUG: STREAM 'IDAT' 41 8192 | |
| 2019-09-01 18:28:28,339 DEBUG: STREAM 'IHDR' 16 13 | |
| 2019-09-01 18:28:28,339 DEBUG: STREAM 'IDAT' 41 8192 | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_ply --no-cameras "/code/opensfm" | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/export_bundler "/code/opensfm" | |
| [INFO] running /code/SuperBuild/src/opensfm/bin/opensfm export_geocoords --transformation --proj '+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs +type=crs' "/code/opensfm" | |
| [INFO] Finished opensfm stage | |
| [INFO] Running odm_filterpoints stage | |
| [INFO] Filtering point cloud (statistical, meanK 16, standard deviation 2.5) | |
| [INFO] running /code/build/bin/odm_filterpoints -inputFile /code/opensfm/reconstruction.ply -outputFile /code/odm_filterpoints/point_cloud.ply -sd 2.5 -meank 16 -verbose | |
| Running with parameters: | |
| --inputFile /code/opensfm/reconstruction.ply | |
| --outputFile /code/odm_filterpoints/point_cloud.ply | |
| --sd 2.500000 | |
| --meank 16.000000 | |
| --verbose | |
| Filtering point cloud... | |
| Done! | |
| [INFO] Finished odm_filterpoints stage | |
| [INFO] Running odm_meshing stage | |
| [INFO] Writing ODM 2.5D Mesh file in: /code/odm_meshing/odm_25dmesh.ply | |
| [93m[WARNING] Cannot calculate GSD, using requested resolution of 20.0 | |
| [INFO] ODM 2.5D DSM resolution: 0.8 | |
| [INFO] Created temporary directory: /code/odm_meshing/tmp | |
| [INFO] Creating DSM for 2.5D mesh | |
| [INFO] running pdal info /code/odm_filterpoints/point_cloud.ply > /tmp/tmpa_Og6E.json | |
| [INFO] Point cloud bounds are [minx: -997.1917114, maxx: 751.9190674] [miny: -1371.436523, maxy: 1403.452271] | |
| [INFO] DEM resolution is (2187, 3469), max tile size is 4096, will split DEM generation into 1 tiles | |
| [INFO] Generating /code/odm_meshing/tmp/mesh_dsm_r2.2627416998_x0_y0.tif (max, radius: 2.2627416998, resolution: 0.8) | |
| [INFO] Pipeline file: /tmp/tmpogpln7.json | |
| [INFO] running pdal pipeline -i /tmp/tmpogpln7.json | |
| [INFO] running gdalbuildvrt "/code/odm_meshing/tmp/tiles.vrt" "/code/odm_meshing/tmp/mesh_dsm_r2.2627416998_x0_y0.tif" | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% /code/odm_meshing/tmp/tiles.vrt /code/odm_meshing/tmp/tiles.tmp.tif | |
| Input file size is 2187, 3469 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% -outsize 10% 0 /code/odm_meshing/tmp/tiles.tmp.tif /code/odm_meshing/tmp/tiles.small.tif | |
| Input file size is 2187, 3469 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_fillnodata.py -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% -b 1 -of GTiff /code/odm_meshing/tmp/tiles.small.tif /code/odm_meshing/tmp/tiles.small_filled.tif | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdalbuildvrt -resolution highest -r bilinear "/code/odm_meshing/tmp/merged.vrt" "/code/odm_meshing/tmp/tiles.small_filled.tif" "/code/odm_meshing/tmp/tiles.tmp.tif" | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] running gdal_translate -co NUM_THREADS=6 --config GDAL_CACHEMAX 48.15% /code/odm_meshing/tmp/merged.vrt /code/odm_meshing/tmp/tiles.tif | |
| Input file size is 2187, 3469 | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] Completed mesh_dsm.tif in 0:00:01.489223 | |
| [INFO] Sampling points from DSM: /code/odm_meshing/tmp/mesh_dsm.tif | |
| [INFO] running /code/SuperBuild/src/dem2points/dem2points -inputFile /code/odm_meshing/tmp/mesh_dsm.tif -outputFile /code/odm_meshing/tmp/dsm_points.ply -skirtHeightThreshold 1.5 -skirtIncrements 0.2 -skirtHeightCap 100 -verbose | |
| Running with parameters: | |
| --inputFile /code/odm_meshing/tmp/mesh_dsm.tif | |
| --outputFile /code/odm_meshing/tmp/dsm_points.ply | |
| --skirtHeightThreshold 1.500000 | |
| --skirtIncrements 0.200000 | |
| --skirtHeightCap 100.000000 | |
| --verbose | |
| Raster Size is 2187x3469 | |
| Extent is (-997.191711, 752.408289), (-1371.436523, 1403.763477) | |
| Read nodata value: -9999 | |
| Calculating skirts and vertex count... 257725 skirt points will be added | |
| Total vertices: 7821820 | |
| Sampling and writing to file... done! | |
| [INFO] running /code/SuperBuild/src/PoissonRecon/Bin/Linux/PoissonRecon --in /code/odm_meshing/tmp/dsm_points.ply --out /code/odm_meshing/odm_25dmesh.dirty.ply --depth 11 --pointWeight 4 --samplesPerNode 1.0 --threads 5 --linearFit --verbose | |
| ************************************************************* | |
| ************************************************************* | |
| ** Running Screened Poisson Reconstruction (Version 12.00) ** | |
| ************************************************************* | |
| ************************************************************* | |
| --in /code/odm_meshing/tmp/dsm_points.ply | |
| --depth 11 | |
| --out /code/odm_meshing/odm_25dmesh.dirty.ply | |
| --verbose | |
| --samplesPerNode 1.000000 | |
| --pointWeight 4.000000 | |
| --threads 5 | |
| --linearFit | |
| Input Points / Samples: 7821820 / 2276083 | |
| # Read input into tree: 6.0 (s), 282.5 (MB) / 282.5 (MB) / 0.0 (MB) | |
| # Got kernel density: 0.8 (s), 357.1 (MB) / 357.1 (MB) / 0.5 (MB) | |
| # Got normal field: 4.1 (s), 814.4 (MB) / 814.4 (MB) / 0.0 (MB) | |
| Point weight / Estimated Area: 7.22992e-08 / 0.565512 | |
| # Finalized tree: 3.9 (s), 1308.3 (MB) / 1308.3 (MB) / 0.0 (MB) | |
| # Set FEM constraints: 7.4 (s), 1064.6 (MB) / 1308.3 (MB) / 0.0 (MB) | |
| #Set point constraints: 1.4 (s), 1064.6 (MB) / 1308.3 (MB) / 0.2 (MB) | |
| Leaf Nodes / Active Nodes / Ghost Nodes: 13443501 / 15363600 / 401 | |
| Memory Usage: 1064.617 MB | |
| Cycle[0] Depth[ 0/11]: Updated constraints / Got system / Solved in: 0.000 / 0.000 / 0.000 (1140.207 MB) Nodes: 8 | |
| Cycle[0] Depth[ 1/11]: Updated constraints / Got system / Solved in: 0.001 / 0.000 / 0.000 (1140.918 MB) Nodes: 27 | |
| Cycle[0] Depth[ 2/11]: Updated constraints / Got system / Solved in: 0.001 / 0.001 / 0.000 (1141.176 MB) Nodes: 125 | |
| Cycle[0] Depth[ 3/11]: Updated constraints / Got system / Solved in: 0.001 / 0.003 / 0.000 (1141.176 MB) Nodes: 729 | |
| Cycle[0] Depth[ 4/11]: Updated constraints / Got system / Solved in: 0.002 / 0.010 / 0.003 (1141.434 MB) Nodes: 4913 | |
| Cycle[0] Depth[ 5/11]: Updated constraints / Got system / Solved in: 0.003 / 0.023 / 0.014 (1143.492 MB) Nodes: 35937 | |
| Cycle[0] Depth[ 6/11]: Updated constraints / Got system / Solved in: 0.003 / 0.009 / 0.008 (1147.359 MB) Nodes: 33096 | |
| Cycle[0] Depth[ 7/11]: Updated constraints / Got system / Solved in: 0.008 / 0.031 / 0.026 (1160.504 MB) Nodes: 106904 | |
| Cycle[0] Depth[ 8/11]: Updated constraints / Got system / Solved in: 0.018 / 0.083 / 0.081 (1210.227 MB) Nodes: 374040 | |
| Cycle[0] Depth[ 9/11]: Updated constraints / Got system / Solved in: 0.059 / 0.296 / 0.345 (1369.250 MB) Nodes: 1291928 | |
| Cycle[0] Depth[10/11]: Updated constraints / Got system / Solved in: 0.207 / 1.006 / 1.382 (1684.070 MB) Nodes: 4115048 | |
| Cycle[0] Depth[11/11]: Updated constraints / Got system / Solved in: 0.207 / 2.238 / 2.682 (1977.891 MB) Nodes: 9373136 | |
| # Linear system solved: 11.1 (s), 1977.9 (MB) / 1977.9 (MB) / 0.0 (MB) | |
| Got average: 0.5 (s), 1030.7 (MB) / 1977.9 (MB) / 0.4 (MB) | |
| Iso-Value: 4.979821e-01 = 3.89513e+06 / 7.82182e+06 | |
| Vertices / Polygons: 2416027 / 4831649 | |
| Corners / Vertices / Edges / Surface / Set Table / Copy Finer: 1.5 / 1.8 / 2.5 / 3.2 / 4.0 / 0.4 (s) | |
| # Got triangles: 21.1 (s), 2088.1 (MB) / 2088.1 (MB) / -nan (MB) | |
| # Total Solve: 59.1 (s), 2088.1 (MB) | |
| [INFO] running /code/build/bin/odm_cleanmesh -inputFile /code/odm_meshing/odm_25dmesh.dirty.ply -outputFile /code/odm_meshing/odm_25dmesh.ply -removeIslands -decimateMesh 598765 -verbose | |
| Running with parameters: | |
| --inputFile /code/odm_meshing/odm_25dmesh.dirty.ply | |
| --outputFile /code/odm_meshing/odm_25dmesh.ply | |
| --decimateMesh 598765 | |
| --removeIslands | |
| --verbose | |
| Removing islands | |
| Decimating mesh | |
| Current vertex count: 2416027 | |
| Wanted vertex count: 598765 | |
| Target reduction set to 0.752170 | |
| Saving cleaned mesh to file... | |
| OK | |
| [INFO] Finished odm_meshing stage | |
| [INFO] Running mvs_texturing stage | |
| [INFO] Writing MVS Textured file in: /code/odm_texturing_25d/odm_textured_model.obj | |
| [INFO] running /code/SuperBuild/install/bin/texrecon /code/opensfm/reconstruction.nvm /code/odm_meshing/odm_25dmesh.ply /code/odm_texturing_25d/odm_textured_model -d gmi -o gauss_clamping -t none --nadir_mode -n 1073741823 | |
| /code/SuperBuild/install/bin/texrecon (built on Aug 13 2019, 21:43:57) | |
| Load and prepare mesh: | |
| PLY Loader: comment VTK generated PLY File | |
| Reading PLY: 598693 verts... 1197229 faces... done. | |
| Warning: Zero-length normals detected: 16 face normals, 0 vertex normals | |
| Generating texture views: | |
| NVM: Loading file... | |
| NVM: Number of views: 2 | |
| NVM: Number of features: 0 | |
| Loading 100%... done. (Took 3.915s) | |
| Building adjacency graph: | |
| Adding edges 100%... done. (Took 3.141s) | |
| 1795742 total edges. | |
| View selection: | |
| Building BVH from 1197229 faces... done. (Took: 1626 ms) | |
| Calculating face qualities 100%... done. (Took 2.028s) | |
| Postprocessing face infos 100%... done. (Took 0.106s) | |
| Maximum quality of a face within an image: 223.09 | |
| Clamping qualities to 192.613 within normalization. | |
| Writing data cost file... done. | |
| Optimizing: | |
| Time[s] Energy | |
| 0 1174630 | |
| 4 1174630 | |
| 5 1174595 | |
| 6 1174584 | |
| 7 1174580 | |
| 8 1174579 | |
| 8 1174579 | |
| 9 1174579 | |
| 10 1174579 | |
| 11 1174579 | |
| 1170586 faces have not been seen | |
| Took: 17.023s | |
| Generating texture patches: | |
| Running... done. (Took 3.339s) | |
| 1624 texture patches. | |
| Running global seam leveling: | |
| Create matrices for optimization... done. | |
| Lhs dimensionality: 20751 x 20751 | |
| Calculating adjustments: | |
| Color channel 0: CG took 75 iterations. Residual is 8.91236e-05 | |
| Color channel 1: CG took 75 iterations. Residual is 8.91236e-05 | |
| Color channel 2: CG took 75 iterations. Residual is 8.91236e-05 | |
| Took 0.045 seconds | |
| Adjusting texture patches 100%... done. (Took 0.088s) | |
| Running local seam leveling: | |
| Blending texture patches 100%... done. (Took 1.176s) | |
| Generating texture atlases: | |
| Sorting texture patches... done. | |
| Working on atlas 1 100%... done. | |
| Finalizing texture atlases... done. (Took: 7.253s) | |
| Building objmodel: | |
| Saving model... done. | |
| Whole texturing procedure took: 42.826s | |
| [INFO] Finished mvs_texturing stage | |
| [INFO] Running odm_georeferencing stage | |
| [INFO] Running georeferencing with OpenSfM transformation matrix | |
| [INFO] running /code/build/bin/odm_georef -bundleFile /code/opensfm/bundle_r000.out -inputTransformFile /code/opensfm/geocoords_transformation.txt -inputCoordFile /code/odm_georeferencing/coords.txt -inputFile /code/odm_texturing_25d/odm_textured_model.obj -outputFile /code/odm_texturing_25d/odm_textured_model_geo.obj -inputPointCloudFile /code/odm_filterpoints/point_cloud.ply -outputPointCloudFile /code/odm_georeferencing/odm_georeferenced_model.laz -outputPointCloudSrs '+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs +type=crs' -verbose -logFile /code/odm_25dgeoreferencing/odm_georeferencing_log.txt -outputTransformFile /code/odm_25dgeoreferencing/odm_georeferencing_transform.txt -georefFileOutputPath /code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt | |
| Log file path was set to: /code/odm_25dgeoreferencing/odm_georeferencing_log.txt | |
| Transform file path was set to: /code/odm_25dgeoreferencing/odm_georeferencing_transform.txt | |
| Georef file output path is set to: /code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt | |
| Missing input in order to use GCP for georeferencing. Using EXIF data instead. | |
| Reading mesh file... | |
| .. mesh file read. | |
| Applying transform to mesh... | |
| .. mesh transformed. | |
| Successfully saved model. | |
| Saving final transform file to '/code/odm_25dgeoreferencing/odm_georeferencing_transform.txt'... | |
| ... final transform saved. | |
| Transforming point cloud... | |
| Point cloud file saved. | |
| Saving georeference system file to '/code/odm_25dgeoreferencing/odm_georeferencing_model_geo.txt'... | |
| ... georeference system saved. | |
| [INFO] Calculating cropping area and generating bounds shapefile from point cloud | |
| [INFO] running pdal translate -i "/code/odm_georeferencing/odm_georeferenced_model.laz" -o "/code/odm_georeferencing/odm_georeferenced_model.decimated.las" decimation --filters.decimation.step=40 | |
| [INFO] running pdal info --boundary --filters.hexbin.edge_size=1 --filters.hexbin.threshold=0 /code/odm_georeferencing/odm_georeferenced_model.decimated.las > /code/odm_georeferencing/odm_georeferenced_model.boundary.json | |
| [INFO] running pdal info --summary /code/odm_georeferencing/odm_georeferenced_model.laz > /code/odm_georeferencing/odm_georeferenced_model.summary.json | |
| [INFO] running ogr2ogr -overwrite -f GPKG -a_srs "+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs" /code/odm_georeferencing/odm_georeferenced_model.bounds.gpkg /code/odm_georeferencing/odm_georeferenced_model.bounds.geojson | |
| [INFO] Finished odm_georeferencing stage | |
| [INFO] Running odm_dem stage | |
| [INFO] Classify: False | |
| [INFO] Create DSM: False | |
| [INFO] Create DTM: False | |
| [INFO] DEM input file /code/odm_georeferencing/odm_georeferenced_model.laz found: True | |
| [93m[WARNING] DEM will not be generated | |
| [INFO] Finished odm_dem stage | |
| [INFO] Running odm_orthophoto stage | |
| [93m[WARNING] Cannot calculate GSD, using requested resolution of 20.0 | |
| [INFO] running /code/build/bin/odm_orthophoto -inputFile /code/odm_texturing_25d/odm_textured_model_geo.obj -logFile /code/odm_orthophoto/odm_orthophoto_log.txt -outputFile /code/odm_orthophoto/odm_orthophoto.png -resolution 5.0 -verbose -outputCornerFile /code/odm_orthophoto/odm_orthophoto_corners.txt | |
| Writing corners to: /code/odm_orthophoto/odm_orthophoto_corners.txt | |
| Reading mesh file... | |
| .. mesh file read. | |
| Set boundary to contain entire model. | |
| Local boundary points: | |
| Point 1: -1155.38 -1411.55 | |
| Point 2: -1155.38 1452 | |
| Point 3: 920.439 1452 | |
| Point 4: 920.439 -1411.55 | |
| Ortho photo bounds x : -1155.38 -> 920.439 | |
| Ortho photo bounds y : -1411.55 -> 1452 | |
| Ortho photo area : 5.94422e+06m2 | |
| Ortho photo resolution, width x height : 10380x14318 | |
| Translating and scaling mesh... | |
| .. mesh translated and scaled. | |
| Rendering the ortho photo... | |
| Material 0 rendered. | |
| ...ortho photo rendered | |
| Writing ortho photo to /code/odm_orthophoto/odm_orthophoto.png | |
| Writing corner coordinates to /code/odm_orthophoto/odm_orthophoto_corners.txt | |
| Orthophoto generation done. | |
| [INFO] Creating GeoTIFF | |
| [INFO] running gdal_translate -a_ullr 448100.548069 4596683.23499 450176.370762 4593819.68592 -co NUM_THREADS=6 -co BIGTIFF=IF_SAFER -co BLOCKYSIZE=512 -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co TILED=YES -co PREDICTOR=2 -a_srs "+proj=utm +zone=17 +datum=WGS84 +units=m +no_defs +type=crs" --config GDAL_CACHEMAX 48.15% /code/odm_orthophoto/odm_orthophoto.png /code/odm_orthophoto/odm_orthophoto.tif > /code/odm_orthophoto/gdal_translate_log.txt | |
| [INFO] Cropping /code/odm_orthophoto/odm_orthophoto.tif | |
| [INFO] running gdalwarp -cutline /code/odm_georeferencing/odm_georeferenced_model.bounds.gpkg -crop_to_cutline -co NUM_THREADS=6 -co BIGTIFF=IF_SAFER -co BLOCKYSIZE=512 -co COMPRESS=DEFLATE -co BLOCKXSIZE=512 -co TILED=YES -co PREDICTOR=2 /code/odm_orthophoto/odm_orthophoto.original.tif /code/odm_orthophoto/odm_orthophoto.tif --config GDAL_CACHEMAX 48.15% | |
| Using band 4 of source image as alpha. | |
| Creating output file that is 7640P x 12912L. | |
| Processing input file /code/odm_orthophoto/odm_orthophoto.original.tif. | |
| 0...10...20...30...40...50...60...70...80...90...100 - done. | |
| [INFO] Finished odm_orthophoto stage | |
| [INFO] No more stages to run | |
| [INFO] MMMMMMMMMMMNNNMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMNNNMMMMMMMMMMM | |
| [INFO] MMMMMMdo:..---../sNMMMMMMMMMMMMMMMMMMMMMMMMMMNs/..---..:odMMMMMM | |
| [INFO] MMMMy-.odNMMMMMNy/`/mMMMMMMMMMMMMMMMMMMMMMMm/`/hNMMMMMNdo.-yMMMM | |
| [INFO] MMN/`sMMMMMMMMMNNMm/`yMMMMMMMMMMMMMMMMMMMMy`/mMNNMMMMMMMMNs`/MMM | |
| [INFO] MM/ hMMMMMMMMNs.+MMM/ dMMMMMMMMMMMMMMMMMMh +MMM+.sNMMMMMMMMh +MM | |
| [INFO] MN /MMMMMMNo/./mMMMMN :MMMMMMMMMMMMMMMMMM: NMMMMm/./oNMMMMMM: NM | |
| [INFO] Mm +MMMMMN+ `/MMMMMMM`-MMMMMMMMMMMMMMMMMM-`MMMMMMM:` oNMMMMM+ mM | |
| [INFO] MM..NMMNs./mNMMMMMMMy sMMMMMMMMMMMMMMMMMMo hMMMMMMMNm/.sNMMN`-MM | |
| [INFO] MMd`:mMNomMMMMMMMMMy`:MMMMMMMNmmmmNMMMMMMN:`hMMMMMMMMMdoNMm-`dMM | |
| [INFO] MMMm:.omMMMMMMMMNh/ sdmmho/.`..`-``-/sddh+ /hNMMMMMMMMdo.:mMMM | |
| [INFO] MMMMMd+--/osss+:-:/` ```:- .ym+ hmo``:-` `+:-:ossso/-:+dMMMMM | |
| [INFO] MMMMMMMNmhysosydmNMo /ds`/NMM+ hMMd..dh. sMNmdysosyhmNMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMMMs .:-:``hmmN+ yNmds -:.:`-NMMMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMMN.-mNm- //:::. -:://: +mMd`-NMMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMM+ dMMN -MMNNN+ yNNNMN :MMMs sMMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMM`.mmmy /mmmmm/ smmmmm``mmmh :MMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMM``:::- ./////. -:::::` :::: -MMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMM:`mNNd /NNNNN+ hNNNNN .NNNy +MMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMMd`/MMM.`ys+//. -/+oso +MMN.`mMMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMMMMMy /o:- `oyhd/ shys+ `-:s-`hMMMMMMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMNmdhhhdmNMMM` +d+ sMMM+ hMMN:`hh- sMMNmdhhhdmNMMMMMMMM | |
| [INFO] MMMMMms:::/++//::+ho .+- /dM+ hNh- +/` -h+:://++/::/smMMMMM | |
| [INFO] MMMN+./hmMMMMMMNds- ./oso:.``:. :-``.:os+- -sdNMMMMMMmy:.oNMMM | |
| [INFO] MMm-.hMNhNMMMMMMMMNo`/MMMMMNdhyyyyhhdNMMMM+`oNMMMMMMMMNhNMh.-mMM | |
| [INFO] MM:`mMMN/-sNNMMMMMMMo yMMMMMMMMMMMMMMMMMMy sMMMMMMMNNs-/NMMm`:MM | |
| [INFO] Mm /MMMMMd/.-oMMMMMMN :MMMMMMMMMMMMMMMMMM-`MMMMMMMo-./dMMMMM/ NM | |
| [INFO] Mm /MMMMMMm:-`sNMMMMN :MMMMMMMMMMMMMMMMMM-`MMMMMNs`-/NMMMMMM/ NM | |
| [INFO] MM:`mMMMMMMMMd/-sMMMo yMMMMMMMMMMMMMMMMMMy sMMMs-/dMMMMMMMMd`:MM | |
| [INFO] MMm-.hMMMMMMMMMdhMNo`+MMMMMMMMMMMMMMMMMMMM+`oNMhdMMMMMMMMMh.-mMM | |
| [INFO] MMMNo./hmNMMMMMNms--yMMMMMMMMMMMMMMMMMMMMMMy--smNMMMMMNmy/.oNMMM | |
| [INFO] MMMMMms:-:/+++/:-+hMMMMMMMMMMMMMMMMMMMMMMMMMNh+-:/+++/:-:smMMMMM | |
| [INFO] MMMMMMMMNdhhyhdmMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMmdhyhhmNMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMNNNNNMMMMMMNNNNNNMMMMMMMMNNMMMMMMMNNMMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMh/-...-+dMMMm......:+hMMMMs../MMMMMo..sMMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMM/ /yhy- sMMm -hhy/ :NMM+ oMMMy /MMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMy /MMMMN` NMm /MMMMo +MM: .` yMd``` :MMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMM+ sMMMMM: hMm /MMMMd -MM- /s `h.`d- -MMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMs +MMMMM. mMm /MMMMy /MM. +M/ yM: `MMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMN- smNm/ +MMm :NNdo` .mMM` oMM+/yMM/ MMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMNo- `:yMMMm `:sNMMM` sMMMMMMM+ NMMMMMMMMMMM | |
| [INFO] MMMMMMMMMMMMMMMNmmNMMMMMMMNmmmmNMMMMMMMNNMMMMMMMMMNNMMMMMMMMMMMM | |
| [INFO] OpenDroneMap app finished - Sun Sep 01 18:31:57 2019 |
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