Created
March 16, 2013 17:34
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SPARQL query for HeatMap
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PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#> | |
PREFIX xsd:<http://www.w3.org/2001/XMLSchema#> | |
PREFIX owl:<http://www.w3.org/2002/07/owl#> | |
PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#> | |
PREFIX property:<http://neurolex.org/wiki/Special:URIResolver/Property-3A> | |
########################################################################## | |
## Get me all neurons and print out "true" if a property a neuron should have | |
## is filled in. Print out "false" if that property is not filled in. | |
########################################################################### | |
select DISTINCT (str(?name) as ?names) (bound(?def) as ?defs) | |
(bound(?syn) as ?syns) | |
(bound(?role) as ?roles) (bound(?abbrev) as ?abbrevs) | |
(bound(?cat) as ?cats) (bound(?dc) as ?dcs) | |
(bound(?id) as ?ids) (bound(?pmid) as ?pmids) (bound(?org) as ?orgs) | |
(bound(?cssh) as ?csshs) (bound(?cssi) as ?csshi) (bound(?loc) as ?locs) | |
(bound(?dl) as ?dls) (bound(?sdod) as ?sdods) (bound(?bt) as ?bts) | |
(bound(?am) as ?ams) (bound(?apl) as ?apls) (bound(?lodaa) as ?lodaas) | |
(bound(?lolaa) as ?lolaas) | |
(bound(?oa) as ?oas) (bound(?nt) as ?nts) (bound(?ntr) as ?ntrs) | |
(bound(?mc) as ?mcs) (bound(?fp) as ?fps) (bound(?sfr) as ?sfrs) | |
(bound(?sfp) as ?sfps) | |
where { | |
?x property:Id "sao1417703748"^^xsd:string . #x is a node w/ id matching our class | |
?y rdfs:subClassOf* ?x . #y are all transitive subclasses of x | |
?y property:Label ?name . #put all the names of all y in name | |
OPTIONAL { | |
?y property:Definition ?def}. | |
OPTIONAL { | |
?y property:Synonym ?syn } . | |
OPTIONAL { | |
?y property:Has_role ?role } . | |
OPTIONAL { | |
?y property:Abbrev ?abbrev } . | |
OPTIONAL { | |
?y rdfs:subClassOf ?cat } . | |
OPTIONAL { | |
?y property:DefiningCitation ?dc } . | |
OPTIONAL { | |
?y property:Id ?id } . | |
OPTIONAL { | |
?y property:PMID ?pmid } . | |
OPTIONAL { | |
?y property:Species ?org } . | |
OPTIONAL { | |
?y property:CellSomaShape ?cssh } . | |
OPTIONAL { | |
?y property:CellSomaSize ?cssi } . | |
OPTIONAL { | |
?y property:Located_in ?loc} . | |
OPTIONAL { | |
?y property:DendriteLocation ?dl } . | |
OPTIONAL { | |
?y property:SpineDensityOnDendrites ?sdod } . | |
OPTIONAL { | |
?y property:BranchingMetrics ?bt } . | |
OPTIONAL { | |
?y property:AxonMyelination ?am } . | |
OPTIONAL { | |
?y property:AxonProjectionLaterality ?apl } . | |
OPTIONAL { | |
?y property:LocationOfAxonArborization ?lodaa } . | |
OPTIONAL { | |
?y property:LocationOfLocalAxonArborization ?lolaa } . | |
OPTIONAL { | |
?y property:OriginOfAxon ?oa } . | |
OPTIONAL { | |
?y property:Neurotransmitter ?nt } . | |
OPTIONAL { | |
?y property:NeurotransmitterReceptors ?ntr } . | |
OPTIONAL { | |
?y property:MolecularConstituents ?mc } . | |
OPTIONAL { | |
?y property:FiringPatterns ?fp } . | |
OPTIONAL { | |
?y property:SpontaneousFiringRate ?sfr } . | |
OPTIONAL { | |
?y property:SpontaneousFiringPatterns ?sfp } . | |
} ORDER BY ?name |
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