Attempt to interact with generated NeuroML2 CElegans files with libneuroml

shell

unknown1040f3847b74:CElegans slarson$ ls
CElegans.ncx		cellMechanisms		generatedMorphML	generatedNeuroML2	morphologies
README.md		dataSets		generatedNeuroML	images			pythonScripts
unknown1040f3847b74:CElegans slarson$ cd generatedNeuroML2/
unknown1040f3847b74:generatedNeuroML2 slarson$ ls
ADAL.nml			BAGL.nml			MuscleCellConnections.net.nml	SABD.nml
ADAR.nml			BAGR.nml			NSML.nml			SABVL.nml
ADEL.nml			BDUL.nml			NSMR.nml			SABVR.nml
ADER.nml			BDUR.nml			OLLL.nml			SDQL.nml
ADFL.nml			CANL.nml			OLLR.nml			SDQR.nml
ADFR.nml			CANR.nml			OLQDL.nml			SIADL.nml
ADLL.nml			CEPDL.nml			OLQDR.nml			SIADR.nml
ADLR.nml			CEPDR.nml			OLQVL.nml			SIAVL.nml
AFDL.nml			CEPVL.nml			OLQVR.nml			SIAVR.nml
AFDR.nml			CEPVR.nml			Octapamine.nml			SIBDL.nml
AIAL.nml			CElegans.net.nml		Octapamine_GJ.nml		SIBDR.nml
AIAR.nml			DA1.nml				PDA.nml				SIBVL.nml
AIBL.nml			DA2.nml				PDB.nml				SIBVR.nml
AIBR.nml			DA3.nml				PDEL.nml			SMBDL.nml
AIML.nml			DA4.nml				PDER.nml			SMBDR.nml
AIMR.nml			DA5.nml				PHAL.nml			SMBVL.nml
AINL.nml			DA6.nml				PHAR.nml			SMBVR.nml
AINR.nml			DA7.nml				PHBL.nml			SMDDL.nml
AIYL.nml			DA8.nml				PHBR.nml			SMDDR.nml
AIYR.nml			DA9.nml				PHCL.nml			SMDVL.nml
AIZL.nml			DB1.nml				PHCR.nml			SMDVR.nml
AIZR.nml			DB2.nml				PLML.nml			Serotonin.nml
ALA.nml				DB3.nml				PLMR.nml			Serotonin_Acetylcholine.nml
ALML.nml			DB4.nml				PLNL.nml			Serotonin_Acetylcholine_GJ.nml
ALMR.nml			DB5.nml				PLNR.nml			Serotonin_GJ.nml
ALNL.nml			DB6.nml				PQR.nml				Serotonin_Glutamate.nml
ALNR.nml			DB7.nml				PVCL.nml			Serotonin_Glutamate_GJ.nml
AQR.nml				DD1.nml				PVCR.nml			URADL.nml
AS1.nml				DD2.nml				PVDL.nml			URADR.nml
AS10.nml			DD3.nml				PVDR.nml			URAVL.nml
AS11.nml			DD4.nml				PVM.nml				URAVR.nml
AS2.nml				DD5.nml				PVNL.nml			URBL.nml
AS3.nml				DD6.nml				PVNR.nml			URBR.nml
AS4.nml				DVA.nml				PVPL.nml			URXL.nml
AS5.nml				DVB.nml				PVPR.nml			URXR.nml
AS6.nml				DVC.nml				PVQL.nml			URYDL.nml
AS7.nml				Dopamine.nml			PVQR.nml			URYDR.nml
AS8.nml				Dopamine_GJ.nml			PVR.nml				URYVL.nml
AS9.nml				FLPL.nml			PVT.nml				URYVR.nml
ASEL.nml			FLPR.nml			PVWL.nml			VA1.nml
ASER.nml			FMRFamide.nml			PVWR.nml			VA10.nml
ASGL.nml			FMRFamide_GJ.nml		README				VA11.nml
ASGR.nml			GABA.nml			RIAL.nml			VA12.nml
ASHL.nml			GABA_GJ.nml			RIAR.nml			VA2.nml
ASHR.nml			Glutamate.nml			RIBL.nml			VA3.nml
ASIL.nml			Glutamate_GJ.nml		RIBR.nml			VA4.nml
ASIR.nml			HSNL.nml			RICL.nml			VA5.nml
ASJL.nml			HSNR.nml			RICR.nml			VA6.nml
ASJR.nml			I1L.nml				RID.nml				VA7.nml
ASKL.nml			I1R.nml				RIFL.nml			VA8.nml
ASKR.nml			I2L.nml				RIFR.nml			VA9.nml
AUAL.nml			I2R.nml				RIGL.nml			VB1.nml
AUAR.nml			I3.nml				RIGR.nml			VB10.nml
AVAL.nml			I4.nml				RIH.nml				VB11.nml
AVAR.nml			I5.nml				RIML.nml			VB2.nml
AVBL.nml			I6.nml				RIMR.nml			VB3.nml
AVBR.nml			IL1DL.nml			RIPL.nml			VB4.nml
AVDL.nml			IL1DR.nml			RIPR.nml			VB5.nml
AVDR.nml			IL1L.nml			RIR.nml				VB6.nml
AVEL.nml			IL1R.nml			RIS.nml				VB7.nml
AVER.nml			IL1VL.nml			RIVL.nml			VB8.nml
AVFL.nml			IL1VR.nml			RIVR.nml			VB9.nml
AVFR.nml			IL2DL.nml			RMDDL.nml			VC1.nml
AVG.nml				IL2DR.nml			RMDDR.nml			VC2.nml
AVHL.nml			IL2L.nml			RMDL.nml			VC3.nml
AVHR.nml			IL2R.nml			RMDR.nml			VC4.nml
AVJL.nml			IL2VL.nml			RMDVL.nml			VC5.nml
AVJR.nml			IL2VR.nml			RMDVR.nml			VC6.nml
AVKL.nml			LUAL.nml			RMED.nml			VD1.nml
AVKR.nml			LUAR.nml			RMEL.nml			VD10.nml
AVL.nml				LeakConductance.nml		RMER.nml			VD11.nml
AVM.nml				M1.nml				RMEV.nml			VD12.nml
AWAL.nml			M2L.nml				RMFL.nml			VD13.nml
AWAR.nml			M2R.nml				RMFR.nml			VD2.nml
AWBL.nml			M3L.nml				RMGL.nml			VD3.nml
AWBR.nml			M3R.nml				RMGR.nml			VD4.nml
AWCL.nml			M4.nml				RMHL.nml			VD5.nml
AWCR.nml			M5.nml				RMHR.nml			VD6.nml
Acetylcholine.nml		MCL.nml				SAADL.nml			VD7.nml
Acetylcholine_GJ.nml		MCR.nml				SAADR.nml			VD8.nml
Acetylcholine_Tyramine.nml	MDL08.nml			SAAVL.nml			VD9.nml
Acetylcholine_Tyramine_GJ.nml	MI.nml				SAAVR.nml
unknown1040f3847b74:generatedNeuroML2 slarson$ python
Python 2.7.6 (default, Jan  2 2014, 15:58:06) 
[GCC 4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.28)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import neuroml
>>> from neuroml import loaders
>>> doc = loaders.NeuroMLLoader.load('./CElegans.net.nml')
Not a valid NeuroML 2 doc: (<type 'exceptions.AttributeError'>, AttributeError('nsmap',), <traceback object at 0x103e35ef0>)