smhr

At the very beginning of installation of rocks-7.0, we must define a roll server. It's recommended to set up a local server to facilitate roll addition. There are some scripts to make this easy for non experts here. After doing steps 0, I and II, change your site configuration file (e.g /etc/apache2/sites-enabled/000-default.conf in ubuntu or mint) to be like this:

## Definitions for rocks-7-0.my.org (change according to your one)
###
<VirtualHost *:80>
ServerName rocks-7-0.my.org
</VirtualHost>

# allow all access to the rolls RPMS

	## Markdown to slides is a command line interface to convert markdown documents to an HTML slideshow.
	## Basically, Markdown to slides uses remark to convert your markdown documents to HTML slideshows, i.e. that can be viewed in your favorite modern Web browser.

	BUILD_DIR := build

	REMARK := markdown-to-slides

	MARKDOWN := $(wildcard *.md)

	HTML := $(patsubst %.md,$(BUILD_DIR)/%.html,$(MARKDOWN))

	fileList = ['system.dat','system.dat_2.5_0.3','system.dat_2_0.3','system.dat_1.1_0.3',
	'system.dat_0.85_0.3','system.dat_0.75_0.3','system.dat_2_0.1']

	for fileName in fileList:
	sDateFile = 'myFiles/' + fileName ## File name to read

	## Read needed data
	tMc, Time, Mass, Rh, Rhl, Rt, Ntot, Rc, error = np.loadtxt(
	sDateFile, unpack=True, usecols = (8, 1, 2, 16, 17, 20, 45, 13, 6))

	mkdir ./big_pdfs
	mkdir ./small_pdfs

	for F in `ls *.pdf`; do

	echo $F
	smallPDF="./small_pdfs/$F"
	echo $newPDF
	gs -dNOPAUSE -dBATCH -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -sOutputFile=$smallPDF $F

	## For installing a package when you installed anaconda for all users
	sudo su root -c "/opt/anaconda3/bin/conda install package_name"
	##
	sudo su root -c "/opt/anaconda3/bin/conda install -c conda-forge package_name"

	#================== Phantom compile =====================
	export OMP_SCHEDULE="dynamic"
	export OMP_STACKSIZE=512M
	ulimit -s unlimited
	export SYSTEM=gfortran
	#================== Phantom run =========================
	export OMP_NUM_THREADS=9
	export I_WILL_NOT_PUBLISH_CRAP=yes
	modelName="N450M37rho16hac120"
	./phantomsetup $modelName < "${modelName}.input"

	solarm
	pc
	450000
	0.1000
	1.500
	2.000
	0.4000
	30.00
	37
	3.477