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neon.data.dataloader.DataLoader, runtime_error of "Could not decode media stream"
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# -*- coding: utf-8 -*- | |
""" | |
Original code: prep.py on https://github.com/anlthms/sp-2016.git | |
* invalid media stream: 2_1418_0.3.wav | |
* valid media stream: 2_1418_0.2.wav | |
md5 checksum | |
------------- | |
964a651d454ff8a2b77ccd35e20d0805 /opt/nih_seizure/train_2.zip | |
9a75e839d67d3f835d3dff2a64193cbe /opt/nih_seizure/train_2/2_1418_0.mat | |
aab3cc51cf29d4bcb19b1d6947dc78d2 /opt/nih_seizure/train_2/2_1418_0.3.wav | |
8d59f9d1bc28609b4316c3cb23390627 /opt/nih_seizure/train_2/2_1418_0.2.wav | |
output | |
------ | |
>>> $ python audiolab_convert.py | |
... scikits.audiolab version: 0.11.0 | |
... Processing... /opt/nih_seizure/train_2/2_1418_0.2.wav | |
... Processing... /opt/nih_seizure/train_2/2_1418_0.3.wav | |
""" | |
import numpy as np | |
from scipy import io | |
from scikits import audiolab | |
def wavwrite(srcfile): | |
try: | |
mat = io.loadmat(srcfile) | |
except ValueError: | |
return | |
dat = mat['dataStruct'][0, 0][0] | |
mn, mx = dat.min(), dat.max() | |
mx = float(max(abs(mx), abs(mn))) | |
if mx != 0: | |
dat *= 0x7FFF / mx | |
dat = np.int16(dat) | |
for elec in [2, 3]: | |
dstfile = srcfile.replace('mat', str(elec) + '.wav') | |
print("Processing... {}".format(dstfile)) | |
aud = dat[:, elec] | |
audiolab.wavwrite(aud, dstfile, fs=400, enc='pcm16') | |
def run_audiolab_convert(): | |
print("scikits.audiolab version: {}".format(audiolab.__version__)) | |
wavwrite('/opt/nih_seizure/train_2/2_1418_0.mat') | |
if __name__ == '__main__': | |
run_audiolab_convert() |
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+ '[' -f /opt/nih_seizure//prepdone ']' | |
+ echo /opt/nih_seizure//prepdone exists. Skipping prep... | |
/opt/nih_seizure//prepdone exists. Skipping prep... | |
++ seq 0 15 | |
+ for elec in '`seq 0 15`' | |
+ echo Electrode 0... | |
Electrode 0... | |
+ ./clear.sh /opt/nih_seizure/ | |
removed '/opt/nih_seizure//train_1/tain-index.csv' | |
removed '/opt/nih_seizure//train_1/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/tain-ingested' | |
removed '/opt/nih_seizure//train_1/eval-index.csv' | |
removed '/opt/nih_seizure//train_1/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/eval-ingested' | |
removed '/opt/nih_seizure//train_1/full-index.csv' | |
removed '/opt/nih_seizure//train_1/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/full-ingested' | |
removed '/opt/nih_seizure//test_1/test-index.csv' | |
removed '/opt/nih_seizure//test_1/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_1/test-ingested' | |
++ seq 1 3 | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_1/ | |
+ '[' '!' -e /opt/nih_seizure//train_1/ ']' | |
+ echo Processing subject 1... | |
Processing subject 1... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:20:09,728 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:20:09,729 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:20:09,729 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:20:09,811 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:20:10,111 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:20:10,611 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:20:13,806 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.919913. | |
2016-09-23 17:20:16,881 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.686141. | |
2016-09-23 17:20:19,842 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.630158. | |
2016-09-23 17:20:23,074 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.691685. | |
2016-09-23 17:20:26,089 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.635203. | |
2016-09-23 17:20:29,091 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.597090. | |
2016-09-23 17:20:32,265 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.665810. | |
2016-09-23 17:20:35,296 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.618876. | |
2016-09-23 17:20:38,325 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.581286. | |
2016-09-23 17:20:41,541 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.652582. | |
2016-09-23 17:20:44,673 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.598051. | |
2016-09-23 17:20:47,645 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.563745. | |
2016-09-23 17:20:50,842 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.627693. | |
2016-09-23 17:20:53,944 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.573886. | |
2016-09-23 17:20:56,998 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.546891. | |
2016-09-23 17:21:00,240 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.605265. | |
Eval AUC for subject 1: 0.6135 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:21:04,624 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:21:04,625 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:21:04,626 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:21:04,766 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:21:05,167 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_1/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:21:05,987 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:21:10,525 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.829045. | |
2016-09-23 17:21:14,824 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.655361. | |
2016-09-23 17:21:19,139 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.628674. | |
2016-09-23 17:21:23,509 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.657899. | |
2016-09-23 17:21:27,820 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.624233. | |
2016-09-23 17:21:32,094 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.603434. | |
2016-09-23 17:21:36,606 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.635908. | |
2016-09-23 17:21:40,966 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.608518. | |
2016-09-23 17:21:45,133 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.580582. | |
2016-09-23 17:21:49,733 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.617614. | |
2016-09-23 17:21:53,996 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.596961. | |
2016-09-23 17:21:58,255 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.559383. | |
2016-09-23 17:22:02,865 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.598481. | |
2016-09-23 17:22:07,342 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.570067. | |
2016-09-23 17:22:11,580 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.543970. | |
2016-09-23 17:22:16,150 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.574345. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_2/ | |
+ '[' '!' -e /opt/nih_seizure//train_2/ ']' | |
+ echo Processing subject 2... | |
Processing subject 2... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:22:24,881 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:22:24,883 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:22:24,883 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:22:24,979 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:22:45,911 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:22:55,105 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:23:00,682 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.614594. | |
2016-09-23 17:23:06,170 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.497015. | |
2016-09-23 17:23:11,850 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.474728. | |
2016-09-23 17:23:17,419 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.488507. | |
2016-09-23 17:23:23,028 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.438430. | |
2016-09-23 17:23:28,426 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.456073. | |
2016-09-23 17:23:33,989 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.448108. | |
2016-09-23 17:23:39,580 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.436957. | |
2016-09-23 17:23:45,213 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.453063. | |
2016-09-23 17:23:50,743 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.408733. | |
2016-09-23 17:23:56,385 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.422035. | |
2016-09-23 17:24:02,095 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.424704. | |
2016-09-23 17:24:07,772 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.433345. | |
2016-09-23 17:24:13,317 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.393148. | |
2016-09-23 17:24:18,745 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.402808. | |
2016-09-23 17:24:24,332 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.401918. | |
Eval AUC for subject 2: 0.6381 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:24:29,853 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:24:29,855 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:24:29,855 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:24:30,020 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:24:30,715 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_2/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:25:00,121 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:25:08,247 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.562305. | |
2016-09-23 17:25:16,134 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.470122. | |
2016-09-23 17:25:24,022 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.430107. | |
2016-09-23 17:25:32,097 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.439821. | |
2016-09-23 17:25:40,019 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.443185. | |
2016-09-23 17:25:47,685 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.408765. | |
2016-09-23 17:25:55,408 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.419932. | |
2016-09-23 17:26:03,279 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.428191. | |
2016-09-23 17:26:11,375 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.393717. | |
2016-09-23 17:26:19,310 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.409062. | |
2016-09-23 17:26:27,124 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.413283. | |
2016-09-23 17:26:34,903 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.386116. | |
2016-09-23 17:26:42,866 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.392421. | |
2016-09-23 17:26:50,828 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.395691. | |
2016-09-23 17:26:58,565 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.374289. | |
2016-09-23 17:27:06,397 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.376144. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_3/ | |
+ '[' '!' -e /opt/nih_seizure//train_3/ ']' | |
+ echo Processing subject 3... | |
Processing subject 3... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:27:18,032 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:27:18,033 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:27:18,034 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:27:18,146 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:27:24,246 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:27:27,452 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:27:33,362 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.619780. | |
2016-09-23 17:27:39,050 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.456606. | |
2016-09-23 17:27:44,535 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.446483. | |
2016-09-23 17:27:50,129 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.434011. | |
2016-09-23 17:27:55,667 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.422821. | |
2016-09-23 17:28:01,256 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.399876. | |
2016-09-23 17:28:06,960 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.429491. | |
2016-09-23 17:28:12,395 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.409875. | |
2016-09-23 17:28:17,997 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.400475. | |
2016-09-23 17:28:23,526 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.393376. | |
2016-09-23 17:28:29,020 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.393874. | |
2016-09-23 17:28:34,860 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.368343. | |
2016-09-23 17:28:40,369 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.390806. | |
2016-09-23 17:28:45,941 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.376453. | |
2016-09-23 17:28:51,588 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.362193. | |
2016-09-23 17:28:57,042 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.363450. | |
Eval AUC for subject 3: 0.6845 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:29:03,253 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:29:03,255 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:29:03,255 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 0 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:29:03,431 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:29:04,184 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_3/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:29:05,612 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:29:13,957 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.557045. | |
2016-09-23 17:29:21,967 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.426490. | |
2016-09-23 17:29:30,188 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.433681. | |
2016-09-23 17:29:38,090 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.409908. | |
2016-09-23 17:29:46,402 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.424084. | |
2016-09-23 17:29:54,423 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.415936. | |
2016-09-23 17:30:02,217 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.392534. | |
2016-09-23 17:30:10,671 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.410416. | |
2016-09-23 17:30:18,589 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.388487. | |
2016-09-23 17:30:26,636 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.402633. | |
2016-09-23 17:30:34,730 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.388583. | |
2016-09-23 17:30:42,792 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.369438. | |
2016-09-23 17:30:51,143 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.390114. | |
2016-09-23 17:30:58,955 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.370655. | |
2016-09-23 17:31:07,097 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.379337. | |
2016-09-23 17:31:15,129 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.363589. | |
+ for elec in '`seq 0 15`' | |
+ echo Electrode 1... | |
Electrode 1... | |
+ ./clear.sh /opt/nih_seizure/ | |
removed '/opt/nih_seizure//train_1/tain-index.csv' | |
removed '/opt/nih_seizure//train_1/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/tain-ingested' | |
removed '/opt/nih_seizure//train_2/tain-index.csv' | |
removed '/opt/nih_seizure//train_2/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/tain-ingested' | |
removed '/opt/nih_seizure//train_3/tain-index.csv' | |
removed '/opt/nih_seizure//train_3/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/tain-ingested' | |
removed '/opt/nih_seizure//train_1/eval-index.csv' | |
removed '/opt/nih_seizure//train_1/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/eval-ingested' | |
removed '/opt/nih_seizure//train_2/eval-index.csv' | |
removed '/opt/nih_seizure//train_2/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/eval-ingested' | |
removed '/opt/nih_seizure//train_3/eval-index.csv' | |
removed '/opt/nih_seizure//train_3/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/eval-ingested' | |
removed '/opt/nih_seizure//train_1/full-index.csv' | |
removed '/opt/nih_seizure//train_1/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/full-ingested' | |
removed '/opt/nih_seizure//train_2/full-index.csv' | |
removed '/opt/nih_seizure//train_2/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/full-ingested' | |
removed '/opt/nih_seizure//train_3/full-index.csv' | |
removed '/opt/nih_seizure//train_3/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/full-ingested' | |
removed '/opt/nih_seizure//test_1/test-index.csv' | |
removed '/opt/nih_seizure//test_1/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_1/test-ingested' | |
removed '/opt/nih_seizure//test_2/test-index.csv' | |
removed '/opt/nih_seizure//test_2/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_2/test-ingested' | |
removed '/opt/nih_seizure//test_3/test-index.csv' | |
removed '/opt/nih_seizure//test_3/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_3/test-ingested' | |
++ seq 1 3 | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_1/ | |
+ '[' '!' -e /opt/nih_seizure//train_1/ ']' | |
+ echo Processing subject 1... | |
Processing subject 1... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:31:27,475 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:31:27,477 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:31:27,477 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:31:27,544 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:31:38,409 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:31:43,127 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:31:46,357 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.919865. | |
2016-09-23 17:31:49,317 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.670436. | |
2016-09-23 17:31:52,411 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.610376. | |
2016-09-23 17:31:55,546 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.671625. | |
2016-09-23 17:31:58,429 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.617013. | |
2016-09-23 17:32:01,476 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.577203. | |
2016-09-23 17:32:04,686 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.645232. | |
2016-09-23 17:32:07,653 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.591789. | |
2016-09-23 17:32:10,631 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.553834. | |
2016-09-23 17:32:13,942 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.613347. | |
2016-09-23 17:32:17,089 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.565479. | |
2016-09-23 17:32:20,133 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.529959. | |
2016-09-23 17:32:23,350 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.591315. | |
2016-09-23 17:32:26,373 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.545793. | |
2016-09-23 17:32:29,496 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.509658. | |
2016-09-23 17:32:32,810 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.579473. | |
Eval AUC for subject 1: 0.6424 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:32:37,322 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:32:37,323 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:32:37,323 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:32:37,417 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:32:37,876 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_1/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:32:59,015 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:33:03,511 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.825250. | |
2016-09-23 17:33:07,821 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.649937. | |
2016-09-23 17:33:12,139 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.610514. | |
2016-09-23 17:33:16,549 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.644167. | |
2016-09-23 17:33:20,947 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.608166. | |
2016-09-23 17:33:25,179 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.586889. | |
2016-09-23 17:33:29,763 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.613285. | |
2016-09-23 17:33:34,133 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.584378. | |
2016-09-23 17:33:38,386 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.559157. | |
2016-09-23 17:33:43,058 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.590468. | |
2016-09-23 17:33:47,590 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.562686. | |
2016-09-23 17:33:51,961 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.537284. | |
2016-09-23 17:33:56,691 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.567913. | |
2016-09-23 17:34:01,138 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.539154. | |
2016-09-23 17:34:05,304 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.510240. | |
2016-09-23 17:34:09,909 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.536666. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_2/ | |
+ '[' '!' -e /opt/nih_seizure//train_2/ ']' | |
+ echo Processing subject 2... | |
Processing subject 2... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:34:18,320 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:34:18,321 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:34:18,321 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:34:18,429 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:34:38,909 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:34:47,921 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:34:53,587 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.610304. | |
2016-09-23 17:34:59,075 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.493917. | |
2016-09-23 17:35:04,402 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.468136. | |
2016-09-23 17:35:09,812 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.483041. | |
2016-09-23 17:35:15,191 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.440263. | |
2016-09-23 17:35:20,910 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.458717. | |
2016-09-23 17:35:26,385 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.450410. | |
2016-09-23 17:35:31,890 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.443962. | |
2016-09-23 17:35:37,306 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.457157. | |
2016-09-23 17:35:42,716 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.419482. | |
2016-09-23 17:35:48,379 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.447221. | |
2016-09-23 17:35:53,840 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.434025. | |
2016-09-23 17:35:59,374 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.436299. | |
2016-09-23 17:36:04,685 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.408193. | |
2016-09-23 17:36:10,388 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.411790. | |
2016-09-23 17:36:15,899 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.430183. | |
Eval AUC for subject 2: 0.6302 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:36:21,197 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:36:21,198 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:36:21,198 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:36:21,359 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:36:22,103 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_2/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:36:51,851 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:37:00,056 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.547968. | |
2016-09-23 17:37:08,103 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.461635. | |
2016-09-23 17:37:15,874 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.423081. | |
2016-09-23 17:37:23,725 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.434510. | |
2016-09-23 17:37:31,525 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.441872. | |
2016-09-23 17:37:39,072 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.410236. | |
2016-09-23 17:37:47,026 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.422362. | |
2016-09-23 17:37:55,053 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.431516. | |
2016-09-23 17:38:02,852 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.398610. | |
2016-09-23 17:38:11,089 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.414005. | |
2016-09-23 17:38:19,120 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.420704. | |
2016-09-23 17:38:26,740 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.390520. | |
2016-09-23 17:38:34,625 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.399081. | |
2016-09-23 17:38:42,630 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.407034. | |
2016-09-23 17:38:50,493 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.385263. | |
2016-09-23 17:38:58,428 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.387342. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_3/ | |
+ '[' '!' -e /opt/nih_seizure//train_3/ ']' | |
+ echo Processing subject 3... | |
Processing subject 3... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:39:09,693 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:39:09,695 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:39:09,696 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:39:09,842 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:39:18,118 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:39:22,119 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:39:28,316 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.605344. | |
2016-09-23 17:39:33,874 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.461983. | |
2016-09-23 17:39:39,496 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.434699. | |
2016-09-23 17:39:45,121 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.432630. | |
2016-09-23 17:39:50,727 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.423423. | |
2016-09-23 17:39:56,310 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.390909. | |
2016-09-23 17:40:02,120 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.422155. | |
2016-09-23 17:40:07,724 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.398209. | |
2016-09-23 17:40:13,377 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.391965. | |
2016-09-23 17:40:19,090 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.392912. | |
2016-09-23 17:40:24,778 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.382705. | |
2016-09-23 17:40:30,316 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.352876. | |
2016-09-23 17:40:36,083 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.368049. | |
2016-09-23 17:40:41,770 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.366919. | |
2016-09-23 17:40:47,292 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.354764. | |
2016-09-23 17:40:53,003 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.356482. | |
Eval AUC for subject 3: 0.6748 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:40:59,234 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:40:59,236 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:40:59,236 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 1 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:40:59,409 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:41:00,214 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_3/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:41:01,819 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:41:10,202 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.557345. | |
2016-09-23 17:41:18,147 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.413546. | |
2016-09-23 17:41:26,573 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.438575. | |
2016-09-23 17:41:34,533 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.403108. | |
2016-09-23 17:41:42,838 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.410894. | |
2016-09-23 17:41:50,870 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.396452. | |
2016-09-23 17:41:59,105 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.378332. | |
2016-09-23 17:42:07,374 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.397139. | |
2016-09-23 17:42:15,411 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.374303. | |
2016-09-23 17:42:23,794 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.382324. | |
2016-09-23 17:42:31,882 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.374236. | |
2016-09-23 17:42:40,013 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.353792. | |
2016-09-23 17:42:48,468 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.369690. | |
2016-09-23 17:42:56,428 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.354199. | |
2016-09-23 17:43:05,053 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.359583. | |
2016-09-23 17:43:13,097 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.353048. | |
+ for elec in '`seq 0 15`' | |
+ echo Electrode 2... | |
Electrode 2... | |
+ ./clear.sh /opt/nih_seizure/ | |
removed '/opt/nih_seizure//train_1/tain-index.csv' | |
removed '/opt/nih_seizure//train_1/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/tain-ingested' | |
removed '/opt/nih_seizure//train_2/tain-index.csv' | |
removed '/opt/nih_seizure//train_2/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/tain-ingested' | |
removed '/opt/nih_seizure//train_3/tain-index.csv' | |
removed '/opt/nih_seizure//train_3/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/tain-ingested' | |
removed '/opt/nih_seizure//train_1/eval-index.csv' | |
removed '/opt/nih_seizure//train_1/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/eval-ingested' | |
removed '/opt/nih_seizure//train_2/eval-index.csv' | |
removed '/opt/nih_seizure//train_2/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/eval-ingested' | |
removed '/opt/nih_seizure//train_3/eval-index.csv' | |
removed '/opt/nih_seizure//train_3/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/eval-ingested' | |
removed '/opt/nih_seizure//train_1/full-index.csv' | |
removed '/opt/nih_seizure//train_1/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/full-ingested' | |
removed '/opt/nih_seizure//train_2/full-index.csv' | |
removed '/opt/nih_seizure//train_2/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/full-ingested' | |
removed '/opt/nih_seizure//train_3/full-index.csv' | |
removed '/opt/nih_seizure//train_3/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/full-ingested' | |
removed '/opt/nih_seizure//test_1/test-index.csv' | |
removed '/opt/nih_seizure//test_1/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_1/test-ingested' | |
removed '/opt/nih_seizure//test_2/test-index.csv' | |
removed '/opt/nih_seizure//test_2/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_2/test-ingested' | |
removed '/opt/nih_seizure//test_3/test-index.csv' | |
removed '/opt/nih_seizure//test_3/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_3/test-ingested' | |
++ seq 1 3 | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_1/ | |
+ '[' '!' -e /opt/nih_seizure//train_1/ ']' | |
+ echo Processing subject 1... | |
Processing subject 1... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:43:26,083 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:43:26,085 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:43:26,085 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:43:26,198 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:43:37,059 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:43:41,913 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:43:45,249 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.912931. | |
2016-09-23 17:43:48,306 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.676415. | |
2016-09-23 17:43:51,379 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.618469. | |
2016-09-23 17:43:54,601 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.678985. | |
2016-09-23 17:43:57,655 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.630647. | |
2016-09-23 17:44:00,894 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.586807. | |
2016-09-23 17:44:04,205 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.657367. | |
2016-09-23 17:44:07,312 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.612460. | |
2016-09-23 17:44:10,424 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.562769. | |
2016-09-23 17:44:13,714 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.634451. | |
2016-09-23 17:44:16,872 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.589458. | |
2016-09-23 17:44:19,944 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.551504. | |
2016-09-23 17:44:23,275 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.604118. | |
2016-09-23 17:44:26,329 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.567675. | |
2016-09-23 17:44:29,405 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.524615. | |
2016-09-23 17:44:32,748 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.580720. | |
Eval AUC for subject 1: 0.5734 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:44:37,444 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:44:37,446 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:44:37,446 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:44:37,572 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:44:38,015 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_1/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:44:59,161 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:45:03,891 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.830101. | |
2016-09-23 17:45:08,390 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.663330. | |
2016-09-23 17:45:12,765 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.623889. | |
2016-09-23 17:45:17,210 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.651680. | |
2016-09-23 17:45:21,398 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.618948. | |
2016-09-23 17:45:25,657 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.592135. | |
2016-09-23 17:45:30,242 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.623433. | |
2016-09-23 17:45:34,641 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.598494. | |
2016-09-23 17:45:38,863 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.567936. | |
2016-09-23 17:45:43,407 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.608361. | |
2016-09-23 17:45:47,647 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.570501. | |
2016-09-23 17:45:52,047 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.545831. | |
2016-09-23 17:45:56,701 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.585313. | |
2016-09-23 17:46:01,073 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.544435. | |
2016-09-23 17:46:05,411 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.528736. | |
2016-09-23 17:46:09,954 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.559987. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_2/ | |
+ '[' '!' -e /opt/nih_seizure//train_2/ ']' | |
+ echo Processing subject 2... | |
Processing subject 2... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:46:18,629 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:46:18,630 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:46:18,630 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:46:18,714 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:46:39,201 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:46:48,282 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:46:53,822 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.602467. | |
2016-09-23 17:46:59,573 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.485520. | |
2016-09-23 17:47:05,193 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.462879. | |
2016-09-23 17:47:11,081 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.482145. | |
2016-09-23 17:47:16,600 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.441392. | |
2016-09-23 17:47:22,238 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.450871. | |
2016-09-23 17:47:28,097 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.441251. | |
2016-09-23 17:47:33,749 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.436236. | |
2016-09-23 17:47:39,378 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.452471. | |
2016-09-23 17:47:44,914 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.411335. | |
2016-09-23 17:47:50,360 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.434174. | |
2016-09-23 17:47:56,010 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.426422. | |
2016-09-23 17:48:01,769 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.439799. | |
2016-09-23 17:48:07,260 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.401249. | |
2016-09-23 17:48:13,039 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.414162. | |
2016-09-23 17:48:18,735 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.407338. | |
Eval AUC for subject 2: 0.6839 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:48:24,679 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:48:24,681 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:48:24,682 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:48:24,856 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:48:25,574 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_2/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:48:55,301 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:49:03,607 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.555565. | |
2016-09-23 17:49:11,582 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.465156. | |
2016-09-23 17:49:19,638 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.422121. | |
2016-09-23 17:49:27,673 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.439103. | |
2016-09-23 17:49:35,816 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.438903. | |
2016-09-23 17:49:43,865 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.404451. | |
2016-09-23 17:49:51,999 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.421213. | |
2016-09-23 17:50:00,234 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.424943. | |
2016-09-23 17:50:08,067 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.396722. | |
2016-09-23 17:50:16,139 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.412577. | |
2016-09-23 17:50:24,307 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.421935. | |
2016-09-23 17:50:32,334 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.392254. | |
2016-09-23 17:50:40,563 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.402495. | |
2016-09-23 17:50:48,847 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.400214. | |
2016-09-23 17:50:56,958 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.381234. | |
2016-09-23 17:51:05,002 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.395573. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_3/ | |
+ '[' '!' -e /opt/nih_seizure//train_3/ ']' | |
+ echo Processing subject 3... | |
Processing subject 3... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:51:16,303 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:51:16,304 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:51:16,304 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:51:16,390 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:51:27,257 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:51:32,713 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:51:38,922 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.605143. | |
2016-09-23 17:51:44,474 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.442997. | |
2016-09-23 17:51:50,331 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.411590. | |
2016-09-23 17:51:55,945 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.402146. | |
2016-09-23 17:52:01,690 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.397189. | |
2016-09-23 17:52:07,350 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.360854. | |
2016-09-23 17:52:13,172 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.388218. | |
2016-09-23 17:52:18,958 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.365353. | |
2016-09-23 17:52:24,626 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.352345. | |
2016-09-23 17:52:30,458 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.350520. | |
2016-09-23 17:52:36,214 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.342923. | |
2016-09-23 17:52:41,794 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.314948. | |
2016-09-23 17:52:47,689 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.336486. | |
2016-09-23 17:52:53,499 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.315060. | |
2016-09-23 17:52:59,174 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.310887. | |
2016-09-23 17:53:05,039 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.301592. | |
Eval AUC for subject 3: 0.5526 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:53:11,259 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:53:11,261 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:53:11,262 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_3/ -r 0 -z 64 -v --no_progress_bar -elec 2 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:53:11,489 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_3/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:53:12,203 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_3/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:53:13,846 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:53:23,071 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.543132. | |
2016-09-23 17:53:31,063 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.410747. | |
2016-09-23 17:53:39,441 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.425793. | |
2016-09-23 17:53:47,566 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.396211. | |
2016-09-23 17:53:55,981 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.405275. | |
2016-09-23 17:54:04,107 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.393149. | |
2016-09-23 17:54:12,005 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.373140. | |
2016-09-23 17:54:20,331 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.383429. | |
2016-09-23 17:54:28,639 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.362042. | |
2016-09-23 17:54:37,116 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.369887. | |
2016-09-23 17:54:45,407 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.356671. | |
2016-09-23 17:54:53,555 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.340316. | |
2016-09-23 17:55:01,743 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.352028. | |
2016-09-23 17:55:09,700 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.323089. | |
2016-09-23 17:55:17,969 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.333344. | |
2016-09-23 17:55:26,238 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.329579. | |
+ for elec in '`seq 0 15`' | |
+ echo Electrode 3... | |
Electrode 3... | |
+ ./clear.sh /opt/nih_seizure/ | |
removed '/opt/nih_seizure//train_1/tain-index.csv' | |
removed '/opt/nih_seizure//train_1/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/tain-ingested' | |
removed '/opt/nih_seizure//train_2/tain-index.csv' | |
removed '/opt/nih_seizure//train_2/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/tain-ingested' | |
removed '/opt/nih_seizure//train_3/tain-index.csv' | |
removed '/opt/nih_seizure//train_3/tain-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/tain-ingested' | |
removed '/opt/nih_seizure//train_1/eval-index.csv' | |
removed '/opt/nih_seizure//train_1/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/eval-ingested' | |
removed '/opt/nih_seizure//train_2/eval-index.csv' | |
removed '/opt/nih_seizure//train_2/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/eval-ingested' | |
removed '/opt/nih_seizure//train_3/eval-index.csv' | |
removed '/opt/nih_seizure//train_3/eval-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/eval-ingested' | |
removed '/opt/nih_seizure//train_1/full-index.csv' | |
removed '/opt/nih_seizure//train_1/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_1/full-ingested' | |
removed '/opt/nih_seizure//train_2/full-index.csv' | |
removed '/opt/nih_seizure//train_2/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_2/full-ingested' | |
removed '/opt/nih_seizure//train_3/full-index.csv' | |
removed '/opt/nih_seizure//train_3/full-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//train_3/full-ingested' | |
removed '/opt/nih_seizure//test_1/test-index.csv' | |
removed '/opt/nih_seizure//test_1/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_1/test-ingested' | |
removed '/opt/nih_seizure//test_2/test-index.csv' | |
removed '/opt/nih_seizure//test_2/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_2/test-ingested' | |
removed '/opt/nih_seizure//test_3/test-index.csv' | |
removed '/opt/nih_seizure//test_3/test-ingested/archive-0.cpio' | |
removed directory '/opt/nih_seizure//test_3/test-ingested' | |
++ seq 1 3 | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_1/ | |
+ '[' '!' -e /opt/nih_seizure//train_1/ ']' | |
+ echo Processing subject 1... | |
Processing subject 1... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:55:39,031 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:55:39,033 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:55:39,033 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:55:39,145 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:55:49,940 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:55:54,865 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:55:58,406 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.922190. | |
2016-09-23 17:56:01,473 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.700952. | |
2016-09-23 17:56:04,558 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.632964. | |
2016-09-23 17:56:07,971 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.693707. | |
2016-09-23 17:56:11,245 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.638451. | |
2016-09-23 17:56:14,304 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.577317. | |
2016-09-23 17:56:17,484 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.655688. | |
2016-09-23 17:56:20,657 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.590432. | |
2016-09-23 17:56:23,669 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.544868. | |
2016-09-23 17:56:26,981 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.618662. | |
2016-09-23 17:56:30,110 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.572953. | |
2016-09-23 17:56:33,188 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.518899. | |
2016-09-23 17:56:36,470 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.596135. | |
2016-09-23 17:56:39,484 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.541570. | |
2016-09-23 17:56:42,557 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.492999. | |
2016-09-23 17:56:46,087 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.554344. | |
Eval AUC for subject 1: 0.6058 | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ -test | |
2016-09-23 17:56:51,053 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:56:51,054 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:56:51,055 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_1/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ -test | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:56:51,139 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_1/full-ingested not found. Triggering data ingest... | |
2016-09-23 17:56:51,586 - neon.data.dataloader - WARNING - /opt/nih_seizure//test_1/test-ingested not found. Triggering data ingest... | |
2016-09-23 17:57:12,888 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
2016-09-23 17:57:17,670 - neon.callbacks.callbacks - INFO - Epoch 0 complete. Train Cost 0.840777. | |
2016-09-23 17:57:22,039 - neon.callbacks.callbacks - INFO - Epoch 1 complete. Train Cost 0.676198. | |
2016-09-23 17:57:26,282 - neon.callbacks.callbacks - INFO - Epoch 2 complete. Train Cost 0.630769. | |
2016-09-23 17:57:30,905 - neon.callbacks.callbacks - INFO - Epoch 3 complete. Train Cost 0.664715. | |
2016-09-23 17:57:35,343 - neon.callbacks.callbacks - INFO - Epoch 4 complete. Train Cost 0.632275. | |
2016-09-23 17:57:39,646 - neon.callbacks.callbacks - INFO - Epoch 5 complete. Train Cost 0.596310. | |
2016-09-23 17:57:44,442 - neon.callbacks.callbacks - INFO - Epoch 6 complete. Train Cost 0.626462. | |
2016-09-23 17:57:48,937 - neon.callbacks.callbacks - INFO - Epoch 7 complete. Train Cost 0.592380. | |
2016-09-23 17:57:53,241 - neon.callbacks.callbacks - INFO - Epoch 8 complete. Train Cost 0.566195. | |
2016-09-23 17:57:57,780 - neon.callbacks.callbacks - INFO - Epoch 9 complete. Train Cost 0.600559. | |
2016-09-23 17:58:02,116 - neon.callbacks.callbacks - INFO - Epoch 10 complete. Train Cost 0.557774. | |
2016-09-23 17:58:06,629 - neon.callbacks.callbacks - INFO - Epoch 11 complete. Train Cost 0.539515. | |
2016-09-23 17:58:11,217 - neon.callbacks.callbacks - INFO - Epoch 12 complete. Train Cost 0.569692. | |
2016-09-23 17:58:15,666 - neon.callbacks.callbacks - INFO - Epoch 13 complete. Train Cost 0.535856. | |
2016-09-23 17:58:20,138 - neon.callbacks.callbacks - INFO - Epoch 14 complete. Train Cost 0.519644. | |
2016-09-23 17:58:24,799 - neon.callbacks.callbacks - INFO - Epoch 15 complete. Train Cost 0.529910. | |
+ for subj in '`seq 1 3`' | |
+ train_dir=/opt/nih_seizure//train_2/ | |
+ '[' '!' -e /opt/nih_seizure//train_2/ ']' | |
+ echo Processing subject 2... | |
Processing subject 2... | |
+ ./model.py -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ | |
2016-09-23 17:58:33,472 - neon.backends.nervanagpu - INFO - Initialized NervanaGPU | |
2016-09-23 17:58:33,473 - neon.backends - INFO - Backend: gpu, RNG seed: 0 | |
2016-09-23 17:58:33,474 - neon.util.argparser - INFO - Command Line Args: -e 16 -w /opt/nih_seizure//train_2/ -r 0 -z 64 -v --no_progress_bar -elec 3 -out /opt/nih_seizure/v1/output/ | |
Defaults: | |
--serialize: 0 | |
--history: 1 | |
--backend: gpu | |
--device_id: 0 | |
--max_devices: 1 | |
--rounding: False | |
--datatype: f32 | |
2016-09-23 17:58:33,598 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/tain-ingested not found. Triggering data ingest... | |
2016-09-23 17:58:54,034 - neon.data.dataloader - WARNING - /opt/nih_seizure//train_2/eval-ingested not found. Triggering data ingest... | |
2016-09-23 17:59:03,534 - neon.callbacks.callbacks - INFO - Model: | |
Network Layers: | |
Sequential | |
Convolution Layer 'Convolution_0': 1 x (103x1677) inputs, 64 x (101x419) outputs, 0,0 padding, 1,4 stride | |
Activation Layer 'Convolution_0_Rectlin': Rectlin | |
Pooling Layer 'Pooling_0': 64 x (101x419) inputs, 64 x (50x209) outputs | |
Convolution Layer 'Convolution_1': 64 x (50x209) inputs, 128 x (48x104) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_1_bnorm': 638976 inputs, 1 steps, 128 feature maps | |
Activation Layer 'Convolution_1_Rectlin': Rectlin | |
Pooling Layer 'Pooling_1': 128 x (48x104) inputs, 128 x (24x52) outputs | |
Convolution Layer 'Convolution_2': 128 x (24x52) inputs, 256 x (22x25) outputs, 0,0 padding, 1,2 stride | |
BatchNorm Layer 'Convolution_2_bnorm': 140800 inputs, 1 steps, 256 feature maps | |
Activation Layer 'Convolution_2_Rectlin': Rectlin | |
Convolution Layer 'Convolution_3': 256 x (22x25) inputs, 512 x (21x24) outputs, 0,0 padding, 1,1 stride | |
BatchNorm Layer 'Convolution_3_bnorm': 258048 inputs, 1 steps, 512 feature maps | |
Activation Layer 'Convolution_3_Rectlin': Rectlin | |
BiBNRNN Layer 'BiBNRNN_0': 10752 inputs, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_1': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
BiBNRNN Layer 'BiBNRNN_2': (128 inputs) * 2, (128 outputs) * 2, 24 steps | |
RecurrentOutput choice RecurrentMean : (256, 24) inputs, 256 outputs | |
Linear Layer 'Linear_0': 256 inputs, 2 outputs | |
Activation Layer 'Linear_0_Softmax': Softmax | |
terminate called after throwing an instance of 'std::runtime_error' | |
what(): Could not decode media stream | |
./run.sh: line 45: 11211 Aborted (core dumped) ./model.py -e $num_epochs -w $train_dir -r 0 -z 64 -v --no_progress_bar -elec $elec -out $out_dir |
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# -*- coding: utf-8 -*- | |
""" | |
* invalid media stream: 2_1418_0.3.wav | |
* valid media stream: 2_1418_0.2.wav | |
md5 checksum | |
------------- | |
964a651d454ff8a2b77ccd35e20d0805 /opt/nih_seizure/train_2.zip | |
9a75e839d67d3f835d3dff2a64193cbe /opt/nih_seizure/train_2/2_1418_0.mat | |
aab3cc51cf29d4bcb19b1d6947dc78d2 /opt/nih_seizure/train_2/2_1418_0.3.wav | |
8d59f9d1bc28609b4316c3cb23390627 /opt/nih_seizure/train_2/2_1418_0.2.wav | |
output | |
------ | |
>>> $ python test_dataloder_audioparams.py | |
... neon 1.5.4+485033c | |
... testcase_elec2() | |
... archive is successfully generated on debug1-ingested/ | |
... data_loader is ok | |
... testcase_elec3() | |
... archive is successfully generated on debug1-ingested/ | |
... terminate called after throwing an instance of 'std::runtime_error' | |
... what(): Could not decode media stream | |
... zsh: abort (core dumped) python test_dataloader_audioparams.py | |
""" | |
import shutil | |
import neon | |
from neon.data import DataLoader, AudioParams | |
from neon.util.argparser import NeonArgparser | |
from neon.backends import gen_backend | |
gen_backend(backend='gpu', batch_size=128) | |
def clear_archive_dir(): | |
shutil.rmtree('/opt/nih_seizure/debug1-ingested') | |
def check_version(): | |
print("neon {}".format(neon.__version__)) | |
def testcase_elec2(): | |
# OK | |
clear_archive_dir() | |
print('testcase_elec2()') | |
subj_dir = '/opt/nih_seizure/train_2' | |
index_file = '/opt/nih_seizure/train_2/debug1_idx.csv' | |
# Single file | |
with open(index_file, 'w') as f: | |
f.write("filename,label\n2_1418_0.2.wav,0\n") | |
media_params = AudioParams( | |
random_scale_percent=5.0, | |
sampling_freq=400, | |
clip_duration=240000 * 1000 / 400, | |
frame_duration=512) | |
data_loader = DataLoader( | |
set_name='debug1', | |
media_params=media_params, | |
index_file=index_file, | |
repo_dir=subj_dir, | |
target_size=1, | |
nclasses=2) | |
print("archive is successfully generated on debug1-ingested/") | |
for X, y in data_loader: | |
assert X.get().shape[1] == 128 | |
print("data_loader is ok") | |
def testcase_elec3(): | |
# abort called after throwing an instanceo of std::runtime_error | |
# => exception raised on loader/src/codec.hpp:L139. | |
# => returned value from avcodec_decode_audio4() is -1094995529. | |
# => the error code (-0x41444E49, INDA) indicates AVERROR_INVALIDDATA. | |
clear_archive_dir() | |
print('testcase_elec3()') | |
subj_dir = '/opt/nih_seizure/train_2' | |
index_file = '/opt/nih_seizure/train_2/debug1_idx.csv' | |
# Single file | |
with open(index_file, 'w') as f: | |
f.write("filename,label\n2_1418_0.3.wav,0\n") | |
media_params = AudioParams( | |
random_scale_percent=5.0, | |
sampling_freq=400, | |
clip_duration=240000 * 1000 / 400, | |
frame_duration=512) | |
data_loader = DataLoader( | |
set_name='debug1', | |
media_params=media_params, | |
index_file=index_file, | |
repo_dir=subj_dir, | |
target_size=1, | |
nclasses=2) | |
print("archive is successfully generated on debug1-ingested/") | |
for X, y in data_loader: | |
assert X.get().shape[1] == 128 | |
print("data_loader is ok") | |
if __name__ == '__main__': | |
check_version() | |
testcase_elec2() | |
testcase_elec3() |
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$ grep -C1 -P "^#.+_VERSION_MINOR" /usr/include/x86_64-linux-gnu/libav*/version.h | |
/usr/include/x86_64-linux-gnu/libavcodec/version.h-#define LIBAVCODEC_VERSION_MAJOR 56 | |
/usr/include/x86_64-linux-gnu/libavcodec/version.h:#define LIBAVCODEC_VERSION_MINOR 60 | |
/usr/include/x86_64-linux-gnu/libavcodec/version.h-#define LIBAVCODEC_VERSION_MICRO 100 | |
-- | |
/usr/include/x86_64-linux-gnu/libavformat/version.h-#define LIBAVFORMAT_VERSION_MAJOR 56 | |
/usr/include/x86_64-linux-gnu/libavformat/version.h:#define LIBAVFORMAT_VERSION_MINOR 40 | |
/usr/include/x86_64-linux-gnu/libavformat/version.h-#define LIBAVFORMAT_VERSION_MICRO 101 | |
-- | |
/usr/include/x86_64-linux-gnu/libavutil/version.h-#define LIBAVUTIL_VERSION_MAJOR 54 | |
/usr/include/x86_64-linux-gnu/libavutil/version.h:#define LIBAVUTIL_VERSION_MINOR 31 | |
/usr/include/x86_64-linux-gnu/libavutil/version.h-#define LIBAVUTIL_VERSION_MICRO 100 | |
$ ipython | |
Python 2.7.12 |Continuum Analytics, Inc.| (default, Jul 2 2016, 17:42:40) | |
Type "copyright", "credits" or "license" for more information. | |
IPython 5.1.0 -- An enhanced Interactive Python. | |
? -> Introduction and overview of IPython's features. | |
%quickref -> Quick reference. | |
help -> Python's own help system. | |
object? -> Details about 'object', use 'object??' for extra details. | |
In [1]: import scikits.audiolab | |
In [2]: scikits.audiolab.__version__ | |
Out[2]: '0.11.0' | |
In [3]: import neon | |
In [4]: neon.__version | |
Out[4]: '1.5.4+485033c' | |
----- | |
* OS: Ubuntu 16.04 | |
* CUDA v8.0.27_1 (cuda_8.0.27_linux.run, cuda_8.0.27.1_linux.run) | |
* CuDNN v5.1 (cudnn-8.0-linux-x64-v5.1.tgz) | |
* Graphic card: GTX 1080 |
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