gistfile1.txt

 ./fiji-linux64 -eval 'run("Bead-based restration", "select=Single-channel spim_data_directory=/data/microscopy/images/ pattern_of_spim=embryo_252+254_r={a}.btf timepoints_to_process=1 angles_to_process=0-180:180 bead_brightness=Weak xy_resolution=0.406 z_resolution=2.000 transformation_model=Rigid select_reference=Manually");'
Re-executing with correct library lookup path (/usr/lib64/:/data/microscopy/fiji/lib/linux64)
init Bead_Registration dialog: tfSpimDataDirectory.getText() = 
log4j:WARN No appenders could be found for logger (loci.common.services.ServiceFactory).
log4j:WARN Please initialize the log4j system properly.
java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:616)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at ij.IJ.run(IJ.java:251)
	at ij.macro.Functions.doRun(Functions.java:579)
	at ij.macro.Functions.doFunction(Functions.java:82)
	at ij.macro.Interpreter.doStatement(Interpreter.java:216)
	at ij.macro.Interpreter.doStatements(Interpreter.java:204)
	at ij.macro.Interpreter.run(Interpreter.java:103)
	at ij.macro.Interpreter.run(Interpreter.java:73)
	at ij.macro.Interpreter.run(Interpreter.java:84)
	at ij.plugin.Macro_Runner.runMacro(Macro_Runner.java:105)
	at ij.IJ.runMacro(IJ.java:104)
	at ij.IJ.runMacro(IJ.java:93)
	at ij.ImageJ.main(ImageJ.java:673)
	at fiji.Main.main(Main.java:106)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:616)
	at imagej.ClassLauncher.launch(ClassLauncher.java:221)
	at imagej.ClassLauncher.run(ClassLauncher.java:159)
	at imagej.ClassLauncher.main(ClassLauncher.java:72)
Caused by: java.lang.NegativeArraySizeException
	at mpicbg.imglib.container.basictypecontainer.array.FloatArray.<init>(FloatArray.java:53)
	at mpicbg.imglib.container.array.ArrayContainerFactory.createFloatInstance(ArrayContainerFactory.java:146)
	at mpicbg.imglib.type.numeric.real.FloatType.createSuitableDirectAccessContainer(FloatType.java:82)
	at mpicbg.imglib.container.DirectAccessContainerFactory.createContainer(DirectAccessContainerFactory.java:68)
	at mpicbg.imglib.container.DirectAccessContainerFactory.createContainer(DirectAccessContainerFactory.java:54)
	at mpicbg.imglib.image.Image.<init>(Image.java:112)
	at mpicbg.imglib.image.Image.<init>(Image.java:135)
	at mpicbg.imglib.image.ImageFactory.createImage(ImageFactory.java:68)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:687)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:583)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:573)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:568)
	at mpicbg.spim.registration.ViewStructure.initViewStructure(ViewStructure.java:321)
	at mpicbg.spim.Reconstruction.processIndividualViewStructure(Reconstruction.java:202)
	at mpicbg.spim.Reconstruction.<init>(Reconstruction.java:43)
	at fiji.plugin.Bead_Registration.run(Bead_Registration.java:97)
	at ij.IJ.runUserPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:152)
	... 27 more