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November 2, 2018 15:29
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Protein Structure Prediction: Get all structures of the sequences that have an alignment with a particular sequence (with unknown structure), given that the alignment has an identicality above 80%
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match | |
$target-sequence isa sequence "MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY"; | |
$similar-sequence isa sequence; | |
$alignment (target-sequence: $target-sequence, matched-sequence: $similar-sequence) isa sequence-sequence-alignment; | |
$alignment has identicality > 0.8; | |
$structure isa structure; | |
(mapping-sequence: $similar-sequence, mapped-structure: $structure) isa sequence-structure-mapping; | |
get $structure; |
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