soyfrien · October 14, 2019 16:11
diff --git a/run2.log.txt b/run2.log.txt
 $ sudo fmriprep-docker -i poldracklab/fmriprep:1.5.0 -u 12218:12218 -w /louis/temp-run2 /louis/raw_bids /louis/derivatives-run2 participant --fs-license-file=/usr/local/freesurfer/license.txt --ignore slicetiming --output-spaces MNI152NLin2009cAsym:res-2 T1w fsaverage5 --participant-label 12345
 RUNNING: docker run --rm -it -e DOCKER_VERSION_8395080871=18.09.7 -u 12218:12218 -v /usr/local/freesurfer/license.txt:/opt/freesurfer/license.txt:ro -v /louis/raw_bids:/data:ro -v /louis/derivatives-run2:/out -v /louis/temp-run2:/scratch poldracklab/fmriprep:1.5.0 /data /out participant --ignore slicetiming --output-spaces MNI152NLin2009cAsym:res-2 T1w fsaverage5 --participant-label 12345 -w /scratch
 Making sure the input data is BIDS compliant (warnings can be ignored in most cases).
  1: [WARN] The recommended file /README is missing. See Section 03 (Modality agnostic files) of the BIDS specification. (code: 101 - README_FILE_MISSING)

  Please visit https://neurostars.org/search?q=README_FILE_MISSING for existing conversations about this issue.


        Summary:                Available Tasks:        Available Modalities: 
        24 Files, 1.48GB        reapp                   T1w                   
        1 - Subject             rest                    bold                  
        1 - Session             pass                    fieldmap              


  If you have any questions, please post on https://neurostars.org/tags/bids.

 191014-05:24:25,810 nipype.workflow IMPORTANT:
   
    Running fMRIPREP version 1.5.0:
      * BIDS dataset path: /data.
      * Participant list: ['12345'].
      * Run identifier: 20191014-052424_32806c53-1cc8-41d5-aea1-923561b7febc.
    
 191014-05:24:32,90 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-pass_run-01_bold.nii.gz" (0.15 GB / 176 TRs). Memory resampled/largemem=0.60/0.86 GB.
 191014-05:24:32,103 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-pass_run-01_bold.nii.gz
 191014-05:24:34,16 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-pass_run-01_bold.nii.gz found.
 191014-05:24:35,561 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:24:39,583 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-pass_run-02_bold.nii.gz" (0.15 GB / 176 TRs). Memory resampled/largemem=0.59/0.86 GB.
 191014-05:24:39,595 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-pass_run-02_bold.nii.gz
 191014-05:24:40,886 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-pass_run-02_bold.nii.gz found.
 191014-05:24:42,388 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:24:46,238 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-01_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.67/1.00 GB.
 191014-05:24:46,251 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-01_bold.nii.gz
 191014-05:24:47,674 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-01_bold.nii.gz found.
 191014-05:24:49,173 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:24:53,94 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-02_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.67/1.00 GB.
 191014-05:24:53,107 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-02_bold.nii.gz
 191014-05:24:54,387 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-02_bold.nii.gz found.
 191014-05:24:55,878 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:24:59,647 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-03_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.67/1.00 GB.
 191014-05:24:59,659 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-03_bold.nii.gz
 191014-05:25:01,135 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-03_bold.nii.gz found.
 191014-05:25:02,638 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:25:06,436 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-04_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.67/0.99 GB.
 191014-05:25:06,449 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-04_bold.nii.gz
 191014-05:25:07,727 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-04_bold.nii.gz found.
 191014-05:25:09,232 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:25:13,59 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-05_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.67/0.99 GB.
 191014-05:25:13,72 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-05_bold.nii.gz
 191014-05:25:14,607 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-05_bold.nii.gz found.
 191014-05:25:16,106 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:25:19,979 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-reapp_run-06_bold.nii.gz" (0.17 GB / 196 TRs). Memory resampled/largemem=0.66/0.99 GB.
 191014-05:25:19,992 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-reapp_run-06_bold.nii.gz
 191014-05:25:21,281 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-reapp_run-06_bold.nii.gz found.
 191014-05:25:22,782 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:25:26,673 nipype.workflow IMPORTANT:
   Creating bold processing workflow for "/data/12345/func/12345_task-rest_run-01_bold.nii.gz" (0.16 GB / 285 TRs). Memory resampled/largemem=0.64/1.09 GB.
 191014-05:25:26,684 nipype.workflow IMPORTANT:
   No single-band-reference found for 12345_task-rest_run-01_bold.nii.gz
 191014-05:25:27,971 nipype.workflow IMPORTANT:
   SDC: fieldmap estimation of type "epi" intended for /data/12345/func/12345_task-rest_run-01_bold.nii.gz found.
 191014-05:25:29,465 nipype.workflow IMPORTANT:
   Creating BOLD surface-sampling workflow.
 191014-05:25:40,763 nipype.workflow IMPORTANT:
   Works derived from this fMRIPrep execution should include the following boilerplate:


 Results included in this manuscript come from preprocessing
 performed using *fMRIPrep* 1.5.0
 (@fmriprep1; @fmriprep2; RRID:SCR_016216),
 which is based on *Nipype* 1.2.2
 (@nipype1; @nipype2; RRID:SCR_002502).

 Anatomical data preprocessing

 : The T1-weighted (T1w) image was corrected for intensity non-uniformity (INU)
 with `N4BiasFieldCorrection` [@n4], distributed with ANTs 2.2.0 [@ants, RRID:SCR_004757], and used as T1w-reference throughout the workflow.
 The T1w-reference was then skull-stripped with a *Nipype* implementation of
 the `antsBrainExtraction.sh` workflow (from ANTs), using OASIS30ANTs
 as target template.
 Brain tissue segmentation of cerebrospinal fluid (CSF),
 white-matter (WM) and gray-matter (GM) was performed on
 the brain-extracted T1w using `fast` [FSL 5.0.9, RRID:SCR_002823,
 @fsl_fast].
 Brain surfaces were reconstructed using `recon-all` [FreeSurfer 6.0.1,
 RRID:SCR_001847, @fs_reconall], and the brain mask estimated
 previously was refined with a custom variation of the method to reconcile
 ANTs-derived and FreeSurfer-derived segmentations of the cortical
 gray-matter of Mindboggle [RRID:SCR_002438, @mindboggle].
 Volume-based spatial normalization to one standard space (MNI152NLin2009cAsym) was performed through
 nonlinear registration with `antsRegistration` (ANTs 2.2.0),
 using brain-extracted versions of both T1w reference and the T1w template.
 The following template was selected for spatial normalization:
 *ICBM 152 Nonlinear Asymmetrical template version 2009c* [@mni152nlin2009casym, RRID:SCR_008796; TemplateFlow ID: MNI152NLin2009cAsym].

 Functional data preprocessing

 : For each of the 9 BOLD runs found per subject (across all
 tasks and sessions), the following preprocessing was performed.
 First, a reference volume and its skull-stripped version were generated
 using a custom methodology of *fMRIPrep*.
 A deformation field to correct for susceptibility distortions was estimated
 based on two echo-planar imaging (EPI) references with opposing phase-encoding
 directions, using `3dQwarp` @afni (AFNI 20160207).
 Based on the estimated susceptibility distortion, an
 unwarped BOLD reference was calculated for a more accurate
 co-registration with the anatomical reference.
 The BOLD reference was then co-registered to the T1w reference using
 `bbregister` (FreeSurfer) which implements boundary-based registration [@bbr].
 Co-registration was configured with six degrees of freedom.
 Head-motion parameters with respect to the BOLD reference
 (transformation matrices, and six corresponding rotation and translation
 parameters) are estimated before any spatiotemporal filtering using
 `mcflirt` [FSL 5.0.9, @mcflirt].
 The BOLD time-series, were resampled to surfaces on the following
 spaces: *fsaverage5*.
 The BOLD time-series (including slice-timing correction when applied)
 were resampled onto their original, native space by applying
 a single, composite transform to correct for head-motion and
 susceptibility distortions.
 These resampled BOLD time-series will be referred to as *preprocessed
 BOLD in original space*, or just *preprocessed BOLD*.
 The BOLD time-series were resampled into standard space,
 generating a *preprocessed BOLD run in ['MNI152NLin2009cAsym'] space*.
 First, a reference volume and its skull-stripped version were generated
 using a custom methodology of *fMRIPrep*.
 Several confounding time-series were calculated based on the
 *preprocessed BOLD*: framewise displacement (FD), DVARS and
 three region-wise global signals.
 FD and DVARS are calculated for each functional run, both using their
 implementations in *Nipype* [following the definitions by @power_fd_dvars].
 The three global signals are extracted within the CSF, the WM, and
 the whole-brain masks.
 Additionally, a set of physiological regressors were extracted to
 allow for component-based noise correction [*CompCor*, @compcor].
 Principal components are estimated after high-pass filtering the
 *preprocessed BOLD* time-series (using a discrete cosine filter with
 128s cut-off) for the two *CompCor* variants: temporal (tCompCor)
 and anatomical (aCompCor).
 tCompCor components are then calculated from the top 5% variable
 voxels within a mask covering the subcortical regions.
 This subcortical mask is obtained by heavily eroding the brain mask,
 which ensures it does not include cortical GM regions.
 For aCompCor, components are calculated within the intersection of
 the aforementioned mask and the union of CSF and WM masks calculated
 in T1w space, after their projection to the native space of each
 functional run (using the inverse BOLD-to-T1w transformation). Components
 are also calculated separately within the WM and CSF masks.
 For each CompCor decomposition, the *k* components with the largest singular
 values are retained, such that the retained components' time series are
 sufficient to explain 50 percent of variance across the nuisance mask (CSF,
 WM, combined, or temporal). The remaining components are dropped from
 consideration.
 The head-motion estimates calculated in the correction step were also
 placed within the corresponding confounds file.
 The confound time series derived from head motion estimates and global
 signals were expanded with the inclusion of temporal derivatives and
 quadratic terms for each [@confounds_satterthwaite_2013].
 Frames that exceeded a threshold of 0.5 mm FD or 1.5 standardised DVARS
 were annotated as motion outliers.
 All resamplings can be performed with *a single interpolation
 step* by composing all the pertinent transformations (i.e. head-motion
 transform matrices, susceptibility distortion correction when available,
 and co-registrations to anatomical and output spaces).
 Gridded (volumetric) resamplings were performed using `antsApplyTransforms` (ANTs),
 configured with Lanczos interpolation to minimize the smoothing
 effects of other kernels [@lanczos].
 Non-gridded (surface) resamplings were performed using `mri_vol2surf`
 (FreeSurfer).


 Many internal operations of *fMRIPrep* use
 *Nilearn* 0.5.2 [@nilearn, RRID:SCR_001362],
 mostly within the functional processing workflow.
 For more details of the pipeline, see [the section corresponding
 to workflows in *fMRIPrep*'s documentation](https://fmriprep.readthedocs.io/en/latest/workflows.html "FMRIPrep's documentation").


 ### Copyright Waiver

 The above boilerplate text was automatically generated by fMRIPrep
 with the express intention that users should copy and paste this
 text into their manuscripts *unchanged*.
 It is released under the [CC0](https://creativecommons.org/publicdomain/zero/1.0/) license.

 ### References


 191014-05:27:14,217 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,222 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,225 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,228 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,231 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,235 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,237 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,238 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,242 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,244 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,246 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,254 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,256 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,257 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,266 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,296 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,299 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,308 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,309 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,312 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,321 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,353 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,356 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,360 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.func_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/func_derivatives_wf/raw_sources".
 191014-05:27:14,363 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:14,364 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,373 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.func_derivatives_wf.raw_sources".
 191014-05:27:14,378 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,385 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,389 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,419 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,423 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,425 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,442 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,446 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,448 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,457 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,464 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,468 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,470 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,473 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,474 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,476 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,477 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,478 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,479 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,480 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,481 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".191014-05:27:14,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".

 191014-05:27:14,484 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,485 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,486 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,487 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,488 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,488 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,491 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,497 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,503 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,506 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,523 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,526 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,530 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,533 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,533 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,536 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,536 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,540 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,541 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,542 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,545 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,547 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,561 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split".
 191014-05:27:14,563 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,565 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0".
 191014-05:27:14,568 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-PA_epi.nii.gz -t
 191014-05:27:14,568 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,570 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split".
 191014-05:27:14,571 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:14,575 nipype.workflow INFO:
   [Node] Setting-up "_split0" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0".
 191014-05:27:14,577 nipype.workflow INFO:
   [Node] Running "_split0" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/fmap/12345_dir-AP_epi.nii.gz -t
 191014-05:27:16,627 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:16,630 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:16,676 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:16,678 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:16,778 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:16,781 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:16,824 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:16,826 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:16,981 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:16,984 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,9 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,11 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,18 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,21 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,33 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,35 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,168 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,169 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,171 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,171 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,197 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,199 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,202 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,204 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,231 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,234 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,289 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,293 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,295 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,300 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,300 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,303 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,347 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,350 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.split".
 191014-05:27:17,404 nipype.workflow INFO:
   [Node] Finished "_split0".
 191014-05:27:17,407 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.split".
 191014-05:27:17,520 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/validate".
 191014-05:27:17,522 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:17,697 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl".
 191014-05:27:17,700 nipype.workflow INFO:
   [Node] Running "lap_tmpl" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
 ImageMath 3 tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz Laplacian /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz 1.5 1
 191014-05:27:17,726 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/validate".
 191014-05:27:17,729 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:17,835 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/validate".
 191014-05:27:17,837 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:17,935 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.validate".
 191014-05:27:18,275 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/validate".
 191014-05:27:18,278 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:18,287 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/validate".
 191014-05:27:18,289 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:18,353 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/validate".
 191014-05:27:18,356 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:18,392 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/validate".
 191014-05:27:18,395 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:18,399 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl".
 191014-05:27:18,402 nipype.workflow INFO:
   [Node] Running "res_tmpl" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
 ResampleImageBySpacing 3 /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz 4 4 4 1
 191014-05:27:18,557 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/validate".
 191014-05:27:18,560 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:18,602 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/validate".
 191014-05:27:18,604 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:27:19,95 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.bidssrc" in "/scratch/fmriprep_wf/single_subject_12345_wf/bidssrc".
 191014-05:27:19,97 nipype.workflow INFO:
   [Node] Running "bidssrc" ("niworkflows.interfaces.bids.BIDSDataGrabber")
 191014-05:27:19,99 nipype.interface WARNING:
   No "t2w" images found for sub-<undefined>
 191014-05:27:19,99 nipype.interface WARNING:
   No "flair" images found for sub-<undefined>
 191014-05:27:19,99 nipype.interface WARNING:
   No "sbref" images found for sub-<undefined>
 191014-05:27:19,99 nipype.interface WARNING:
   No "roi" images found for sub-<undefined>
 191014-05:27:19,104 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.bidssrc".
 191014-05:27:19,893 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_split".
 191014-05:27:19,899 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /data/12345/func/12345_task-rest_run-01_bold.nii.gz -t
 191014-05:27:22,40 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl".
 191014-05:27:22,849 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:22,849 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:22,852 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:22,853 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:22,854 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:22,857 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:22,867 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:22,873 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:22,877 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:22,882 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,211 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:23,216 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,226 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:23,226 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:23,231 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200191014-05:27:23,231 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200

 191014-05:27:23,343 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:23,348 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,489 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref".
 191014-05:27:23,492 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:23,583 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:23,587 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,835 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:23,840 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,857 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:23,862 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,864 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:23,869 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,869 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:23,874 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:23,883 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:23,887 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:24,81 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:24,83 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge".
 191014-05:27:24,84 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:24,88 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:24,207 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge".
 191014-05:27:24,211 nipype.workflow INFO:
   [Node] Running "merge" ("niworkflows.interfaces.freesurfer.StructuralReference"), a CommandLine Interface with command:
 mri_robust_template --satit --fixtp --mov /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0000.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0001.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0002.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/split/mapflow/_split0/vol0003.nii.gz --inittp 1 --iscale --noit --template template.nii.gz --subsample 200
 191014-05:27:24,770 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.gen_ref".
 191014-05:27:25,76 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_template_wf/t1_template_dimensions".
 191014-05:27:25,79 nipype.workflow INFO:
   [Node] Running "t1_template_dimensions" ("niworkflows.interfaces.images.TemplateDimensions")
 191014-05:27:25,283 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.t1_template_dimensions".
 191014-05:27:26,415 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.bids_info" in "/scratch/fmriprep_wf/single_subject_12345_wf/bids_info".
 191014-05:27:26,418 nipype.workflow INFO:
   [Node] Running "bids_info" ("niworkflows.interfaces.bids.BIDSInfo")
 191014-05:27:26,941 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.bids_info".
 191014-05:27:27,358 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt".
 191014-05:27:27,362 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /data/12345/func/12345_task-rest_run-01_bold.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/mcflirt/12345_task-rest_run-01_bold_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:27:29,398 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_derivatives_wf/raw_sources".
 191014-05:27:29,401 nipype.workflow INFO:
   [Node] Running "raw_sources" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:29,402 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_derivatives_wf.t1_name" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_derivatives_wf/t1_name".
 191014-05:27:29,405 nipype.workflow INFO:
   [Node] Running "t1_name" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:29,407 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources".
 191014-05:27:29,412 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_derivatives_wf.t1_name".
 191014-05:27:30,218 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.validate".
 191014-05:27:31,208 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl".
 191014-05:27:31,556 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:27:31,559 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:27:32,53 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_split".
 191014-05:27:32,65 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/validate/12345_task-pass_run-01_bold_valid.nii.gz -t
 191014-05:27:32,649 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref".
 191014-05:27:32,653 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/mrg_tmpl".
 191014-05:27:32,653 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:32,657 nipype.workflow INFO:
   [Node] Running "mrg_tmpl" ("nipype.interfaces.utility.base.Merge")
 191014-05:27:32,663 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl".
 191014-05:27:33,21 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.validate".
 191014-05:27:33,235 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.validate".
 191014-05:27:33,240 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.validate".
 191014-05:27:33,580 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.validate".
 191014-05:27:33,593 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.validate".
 191014-05:27:34,11 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:27:34,34 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_split
  Interface: nipype.interfaces.fsl.utils.Split
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:27:34,37 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_split".
 191014-05:27:34,58 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/validate/12345_task-pass_run-02_bold_valid.nii.gz -t
 191014-05:27:34,687 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref".
 191014-05:27:34,688 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_split".
 191014-05:27:34,690 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:34,691 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/validate/12345_task-reapp_run-04_bold_valid.nii.gz -t
 191014-05:27:34,845 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.t1_conform" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_template_wf/t1_conform".
 191014-05:27:34,854 nipype.workflow INFO:
   [Node] Setting-up "_t1_conform0" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_template_wf/t1_conform/mapflow/_t1_conform0".
 191014-05:27:34,857 nipype.workflow INFO:
   [Node] Running "_t1_conform0" ("niworkflows.interfaces.images.Conform")
 191014-05:27:35,87 nipype.workflow INFO:
   [Node] Finished "_t1_conform0".
 191014-05:27:35,90 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.t1_conform".
 191014-05:27:35,322 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref".
 191014-05:27:35,324 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:35,326 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_split".
 191014-05:27:35,330 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/validate/12345_task-reapp_run-05_bold_valid.nii.gz -t
 191014-05:27:35,596 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.validate".
 191014-05:27:36,115 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.115586:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:36,116 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.115586:++ Authored by: RW Cox
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:  you should consider running: 
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:     3dWarp -deoblique 
 191014-05:27:36,117 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:  on this and  other oblique datasets in the same session.
 191014-05:27:36,118 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206: See 3dWarp -help for details.
 191014-05:27:36,118 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:36,118 nipype.interface INFO:
   stderr 2019-10-14T05:27:36.117206:++ Coarse del was 10, replaced with 7
 191014-05:27:36,261 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:27:36,278 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_split
  Interface: nipype.interfaces.fsl.utils.Split
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:27:36,282 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_split".
 191014-05:27:36,851 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref".
 191014-05:27:36,870 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:37,496 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref".
 191014-05:27:37,498 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:38,65 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.065137:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:38,65 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.065137:++ Authored by: RW Cox
 191014-05:27:38,66 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:38,66 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:38,66 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:38,66 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:  you should consider running: 
 191014-05:27:38,66 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:     3dWarp -deoblique 
 191014-05:27:38,67 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:  on this and  other oblique datasets in the same session.
 191014-05:27:38,67 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478: See 3dWarp -help for details.
 191014-05:27:38,67 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.066478:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:38,67 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.067356:++ Coarse del was 10, replaced with 7
 191014-05:27:38,182 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_split".
 191014-05:27:38,185 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/validate/12345_task-reapp_run-02_bold_valid.nii.gz -t
 191014-05:27:38,268 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.268009:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:38,268 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.268728:++ Authored by: RW Cox
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:  you should consider running: 
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:     3dWarp -deoblique 
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:  on this and  other oblique datasets in the same session.
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934: See 3dWarp -help for details.
 191014-05:27:38,270 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:38,271 nipype.interface INFO:
   stderr 2019-10-14T05:27:38.269934:++ Coarse del was 10, replaced with 7
 191014-05:27:39,175 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.validate".
 191014-05:27:39,803 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.803303:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:39,804 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.804451:++ Authored by: RW Cox
 191014-05:27:39,805 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:39,805 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:39,805 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:39,805 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:  you should consider running: 
 191014-05:27:39,806 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:     3dWarp -deoblique 
 191014-05:27:39,806 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:  on this and  other oblique datasets in the same session.
 191014-05:27:39,806 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372: See 3dWarp -help for details.
 191014-05:27:39,806 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.805372:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:39,806 nipype.interface INFO:
   stderr 2019-10-14T05:27:39.806719:++ Coarse del was 10, replaced with 7
 191014-05:27:40,141 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_split".
 191014-05:27:40,151 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/validate/12345_task-reapp_run-01_bold_valid.nii.gz -t
 191014-05:27:40,460 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/validate/12345_task-reapp_run-03_bold_valid.nii.gz -t
 191014-05:27:40,926 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.926607:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:40,927 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.926607:++ Authored by: RW Cox
 191014-05:27:40,928 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:40,929 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:40,929 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:40,929 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:  you should consider running: 
 191014-05:27:40,930 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:     3dWarp -deoblique 
 191014-05:27:40,930 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:  on this and  other oblique datasets in the same session.
 191014-05:27:40,930 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847: See 3dWarp -help for details.
 191014-05:27:40,930 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.927847:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:40,931 nipype.interface INFO:
   stderr 2019-10-14T05:27:40.931028:++ Coarse del was 10, replaced with 7
 191014-05:27:41,492 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:27:42,749 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref".
 191014-05:27:42,752 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:43,354 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref".
 191014-05:27:43,357 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:43,358 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_split" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_split".
 191014-05:27:43,361 nipype.workflow INFO:
   [Node] Running "bold_split" ("nipype.interfaces.fsl.utils.Split"), a CommandLine Interface with command:
 fslsplit /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/validate/12345_task-reapp_run-06_bold_valid.nii.gz -t
 191014-05:27:43,960 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref".
 191014-05:27:43,962 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.get1st" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/anat_template_wf/get1st".
 191014-05:27:43,964 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:27:43,965 nipype.workflow INFO:
   [Node] Running "get1st" ("nipype.interfaces.utility.base.Select")
 191014-05:27:43,971 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.anat_template_wf.get1st".
 191014-05:27:45,144 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.gen_ref".
 191014-05:27:46,230 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.230245:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:46,230 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.230245:++ Authored by: RW Cox
 191014-05:27:46,231 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:46,231 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:46,231 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:46,232 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:  you should consider running: 
 191014-05:27:46,232 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:     3dWarp -deoblique 
 191014-05:27:46,232 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:  on this and  other oblique datasets in the same session.
 191014-05:27:46,233 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441: See 3dWarp -help for details.
 191014-05:27:46,233 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.231441:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:46,233 nipype.interface INFO:
   stderr 2019-10-14T05:27:46.233644:++ Coarse del was 10, replaced with 7
 191014-05:27:46,623 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_hmc_wf/mcflirt".
 191014-05:27:46,627 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/validate/12345_task-reapp_run-02_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-02_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:27:47,263 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.surface_recon_wf.fov_check" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/surface_recon_wf/fov_check".
 191014-05:27:47,267 nipype.workflow INFO:
   [Node] Running "fov_check" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:27:47,287 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.truncate_images" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/truncate_images".
 191014-05:27:47,292 nipype.workflow INFO:
   [Node] Setting-up "_truncate_images0" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
 191014-05:27:47,296 nipype.workflow INFO:
   [Node] Running "_truncate_images0" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
 ImageMath 3 12345_T1w_maths.nii.gz TruncateImageIntensity /data/12345/anat/12345_T1w.nii.gz 0.01 0.999 256
 191014-05:27:47,479 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.479163:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:27:47,480 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.480716:++ Authored by: RW Cox
 191014-05:27:47,483 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:27:47,484 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:27:47,484 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:  or viewing/combining it with volumes of differing obliquity,
 191014-05:27:47,485 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:  you should consider running: 
 191014-05:27:47,485 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:     3dWarp -deoblique 
 191014-05:27:47,486 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605:  on this and  other oblique datasets in the same session.
 191014-05:27:47,486 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.483605: See 3dWarp -help for details.
 191014-05:27:47,490 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.490054:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:27:47,491 nipype.interface INFO:
   stderr 2019-10-14T05:27:47.490054:++ Coarse del was 10, replaced with 7
 191014-05:27:47,650 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.surface_recon_wf.recon_config" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/surface_recon_wf/recon_config".
 191014-05:27:47,656 nipype.workflow INFO:
   [Node] Running "recon_config" ("niworkflows.interfaces.freesurfer.FSDetectInputs")
 191014-05:27:47,696 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.surface_recon_wf.recon_config".
 191014-05:27:47,962 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.surface_recon_wf.fov_check".
 191014-05:27:57,586 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_split".
 191014-05:28:02,134 nipype.workflow INFO:
   [Node] Finished "_truncate_images0".
 191014-05:28:02,136 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.truncate_images".
 191014-05:28:08,358 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_split".
 191014-05:28:11,324 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_split".
 191014-05:28:13,702 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_split".
 191014-05:28:14,734 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:14,738 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:15,304 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_split".
 191014-05:28:18,108 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_split".
 191014-05:28:18,684 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_split".
 191014-05:28:19,597 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_split".
 191014-05:28:20,439 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_split".
 191014-05:28:20,683 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:21,26 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:21,252 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:22,386 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:22,613 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:22,618 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:22,889 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:23,628 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:23,968 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:24,664 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:24,667 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:25,353 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:26,678 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:27,179 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.merge".
 191014-05:28:29,606 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:31,459 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:32,551 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:28:32,560 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:28:34,559 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:28:34,565 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:28:34,697 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:28:36,568 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:36,572 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:36,956 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:28:38,679 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:38,683 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:40,172 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:28:40,176 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:28:42,514 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:28:42,518 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:28:43,467 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:44,612 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:28:44,621 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:28:45,826 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:46,665 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:28:46,674 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:28:47,45 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:28:48,667 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:28:48,672 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:28:48,679 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:28:48,688 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:28:50,442 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:28:51,651 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:28:52,607 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:28:52,612 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:28:52,612 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:28:52,616 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:28:52,626 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:52,629 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:28:52,630 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:52,633 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:28:55,512 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:28:55,737 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:28:55,862 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:28:56,596 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:28:56,600 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:28:56,924 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:28:58,82 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:28:58,306 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:28:58,578 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate
  Interface: nipype.interfaces.fsl.maths.DilateImage
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_map_brainmask.pklz'

 191014-05:28:58,583 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:28:58,587 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:28:59,156 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:28:59,460 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:28:59,655 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:28:59,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:00,120 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:29:00,395 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:29:00,623 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:00,640 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.check_hdr
  Interface: niworkflows.interfaces.images.MatchHeader
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:00,763 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:01,219 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:01,223 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:01,227 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:01,232 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:01,751 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:29:01,837 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.merge".
 191014-05:29:02,49 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:02,573 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:02,671 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:03,132 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:03,135 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:03,624 nipype.interface INFO:
   stderr 2019-10-14T05:29:03.624793:++ Max displacement in automask = 1.01 (mm) at sub-brick 4
 191014-05:29:03,625 nipype.interface INFO:
   stderr 2019-10-14T05:29:03.624793:++ Max delta displ  in automask = 0.69 (mm) at sub-brick 5
 191014-05:29:04,649 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:04,653 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:04,657 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:04,751 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:06,547 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:06,836 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:07,336 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:07,796 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:07,934 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:08,119 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.gen_ref".
 191014-05:29:08,528 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm
  Interface: niworkflows.interfaces.fixes.FixHeaderRegistration
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_init_aff.pklz'

 191014-05:29:08,534 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:08,542 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:08,552 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:08,653 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:09,78 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:09,82 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:09,83 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:09,86 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:09,804 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:10,580 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_hmc_wf/mcflirt".
 191014-05:29:10,584 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/validate/12345_task-pass_run-01_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_hmc_wf/mcflirt/12345_task-pass_run-01_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:10,593 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:10,597 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:11,91 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:11,145 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:11,146 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:11,184 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:11,254 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:11,572 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:12,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:12,604 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:12,605 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:12,608 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:12,612 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:12,620 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:12,927 nipype.interface INFO:
   stderr 2019-10-14T05:29:12.926929:++ Max displacement in automask = 1.17 (mm) at sub-brick 19
 191014-05:29:12,927 nipype.interface INFO:
   stderr 2019-10-14T05:29:12.926929:++ Max delta displ  in automask = 0.49 (mm) at sub-brick 19
 191014-05:29:12,995 nipype.interface INFO:
   stderr 2019-10-14T05:29:12.995773:++ Max displacement in automask = 1.51 (mm) at sub-brick 16
 191014-05:29:12,996 nipype.interface INFO:
   stderr 2019-10-14T05:29:12.995773:++ Max delta displ  in automask = 0.64 (mm) at sub-brick 5
 191014-05:29:13,162 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:13,166 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:14,582 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:14,583 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:14,666 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:29:14,675 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:15,40 nipype.interface INFO:
   stderr 2019-10-14T05:29:15.040384:++ Max displacement in automask = 1.22 (mm) at sub-brick 15
 191014-05:29:15,40 nipype.interface INFO:
   stderr 2019-10-14T05:29:15.040384:++ Max delta displ  in automask = 0.86 (mm) at sub-brick 1
 191014-05:29:15,80 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:15,102 nipype.interface INFO:
   stderr 2019-10-14T05:29:15.102843:++ Max displacement in automask = 1.07 (mm) at sub-brick 3
 191014-05:29:15,103 nipype.interface INFO:
   stderr 2019-10-14T05:29:15.102843:++ Max delta displ  in automask = 1.26 (mm) at sub-brick 13
 191014-05:29:16,584 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:16,589 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:16,911 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:17,105 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.gen_ref".
 191014-05:29:17,344 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.gen_ref".
 191014-05:29:17,954 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:18,405 nipype.interface INFO:
   stderr 2019-10-14T05:29:18.405482:++ Max displacement in automask = 1.54 (mm) at sub-brick 19
 191014-05:29:18,405 nipype.interface INFO:
   stderr 2019-10-14T05:29:18.405482:++ Max delta displ  in automask = 0.65 (mm) at sub-brick 19
 191014-05:29:18,563 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:18,568 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:18,573 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:18,575 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_hmc_wf/mcflirt".
 191014-05:29:18,579 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/validate/12345_task-pass_run-02_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_hmc_wf/mcflirt/12345_task-pass_run-02_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:18,582 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:18,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:18,594 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:19,135 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.gen_ref".
 191014-05:29:19,488 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:19,546 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:19,558 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.gen_ref".
 191014-05:29:20,571 nipype.interface INFO:
   stderr 2019-10-14T05:29:20.571277:++ Max displacement in automask = 2.11 (mm) at sub-brick 12
 191014-05:29:20,571 nipype.interface INFO:
   stderr 2019-10-14T05:29:20.571277:++ Max delta displ  in automask = 1.35 (mm) at sub-brick 15
 191014-05:29:20,585 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:20,589 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:21,84 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:21,88 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_hmc_wf/mcflirt".
 191014-05:29:21,92 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/validate/12345_task-reapp_run-03_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-03_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:21,95 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:21,504 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:21,597 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_hmc_wf/mcflirt".
 191014-05:29:21,600 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/validate/12345_task-reapp_run-04_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-04_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:22,37 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:22,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:22,595 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:22,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:22,605 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:22,645 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.mcflirt".
 191014-05:29:22,747 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.gen_ref".
 191014-05:29:23,301 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:23,609 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:23,640 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_hmc_wf/mcflirt".
 191014-05:29:23,645 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/validate/12345_task-reapp_run-05_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-05_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:24,587 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:24,591 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:24,591 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_hmc_wf/mcflirt".
 191014-05:29:24,594 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:24,596 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/validate/12345_task-reapp_run-01_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-01_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:24,600 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:24,739 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.gen_ref".
 191014-05:29:25,78 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:25,83 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:25,112 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_hmc_wf/normalize_motion".
 191014-05:29:25,114 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:29:25,127 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.normalize_motion".
 191014-05:29:25,404 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:25,805 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:25,947 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:26,99 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:26,609 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:26,636 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate
  Interface: nipype.interfaces.fsl.maths.DilateImage
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:26,642 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:26,646 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:26,648 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:26,652 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:26,656 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:26,665 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:27,158 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_confounds_wf/fdisp".
 191014-05:29:27,161 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:29:27,164 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.mcflirt" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_hmc_wf/mcflirt".
 191014-05:29:27,170 nipype.workflow INFO:
   [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
 mcflirt -in /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/validate/12345_task-reapp_run-06_bold_valid.nii.gz -out /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_hmc_wf/mcflirt/12345_task-reapp_run-06_bold_valid_mcf.nii.gz -reffile /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz -mats -plots
 191014-05:29:27,173 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_confounds_wf.fdisp".
 191014-05:29:28,595 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:28,599 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:28,926 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:29,62 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:29,120 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:29,205 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:29,797 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.mcflirt".
 191014-05:29:29,825 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:29,911 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:30,988 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:31,80 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:31,126 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:31,142 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.check_hdr
  Interface: niworkflows.interfaces.images.MatchHeader
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:31,371 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:29:31,686 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:31,704 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
  Interface: niworkflows.interfaces.fixes.FixHeaderApplyTransforms
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:31,709 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:31,712 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:31,716 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:31,717 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:31,718 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:31,722 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:31,785 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:31,789 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:31,795 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:31,798 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_hmc_wf/fsl2itk".
 191014-05:29:31,804 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:31,823 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:29:32,594 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:29:32,598 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:29:32,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:32,603 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:32,608 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:32,612 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:32,650 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/normalize_motion".
 191014-05:29:32,653 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:29:32,672 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.normalize_motion".
 191014-05:29:32,692 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:32,705 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:32,869 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:29:33,267 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:29:33,295 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:33,897 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:34,130 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:34,358 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:34,521 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:34,539 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize
  Interface: nipype.interfaces.afni.utils.Unifize
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:34,544 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:29:34,548 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:29:34,553 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:29:34,553 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:29:34,796 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:29:35,138 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:35,143 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:35,148 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:35,150 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:35,197 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:35,605 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:35,623 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp
  Interface: nipype.algorithms.confounds.FramewiseDisplacement
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:35,628 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_confounds_wf/fdisp".
 191014-05:29:35,644 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:29:35,663 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_confounds_wf.fdisp".
 191014-05:29:36,581 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:36,585 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:29:36,585 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:36,589 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:29:36,589 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:36,593 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:36,597 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:36,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:36,603 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:29:36,683 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:37,65 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:37,856 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:38,493 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:38,599 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:38,620 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
  Interface: niworkflows.interfaces.fixes.FixHeaderApplyTransforms
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:38,623 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:38,627 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:38,630 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:38,632 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:38,642 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:38,646 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:40,790 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:29:40,983 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:41,172 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:29:42,637 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:42,641 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:29:42,647 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:29:42,719 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:29:42,902 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:29:43,343 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:29:44,605 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:29:44,609 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:29:44,610 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:44,613 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:29:44,616 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:44,707 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:44,713 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:44,783 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:29:44,911 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:29:45,96 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:45,110 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:29:46,150 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:46,176 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:29:46,178 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:46,401 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:29:46,519 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:46,639 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:29:46,644 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:29:46,646 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:46,647 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:29:46,649 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:46,650 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:29:46,650 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:29:46,655 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:29:46,659 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:46,666 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:46,923 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:29:46,929 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:29:47,192 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:29:48,57 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:48,247 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:29:48,583 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass
  Interface: nipype.interfaces.afni.preprocess.Automask
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_fixhdr_unifize.pklz'

 191014-05:29:48,586 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:29:48,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:48,594 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:48,594 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:29:48,594 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:29:48,597 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:48,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:48,603 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:48,603 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:29:48,606 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:29:48,608 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:29:48,610 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:29:48,610 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:48,613 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:48,652 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:29:48,723 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:49,49 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:29:50,585 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:29:50,588 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:50,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:29:50,595 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:29:50,638 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:50,643 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:29:50,781 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:50,792 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:29:50,851 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:50,873 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:51,51 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:29:51,173 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:29:51,199 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask
  Interface: niworkflows.interfaces.fixes.FixHeaderApplyTransforms
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:29:51,204 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:29:51,212 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:29:51,228 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:29:51,231 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:29:51,441 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:29:52,633 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:29:52,636 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:52,638 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:29:52,641 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:52,642 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:29:52,645 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:29:52,648 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:52,652 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:52,654 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:52,656 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:29:52,659 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:52,661 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:52,665 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:29:52,665 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:52,668 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:29:52,799 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:29:52,854 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:29:52,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:29:52,916 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:29:54,630 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:29:54,632 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:29:54,633 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:29:54,636 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:29:54,637 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:54,727 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:29:54,940 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:29:54,985 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:29:55,56 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:55,268 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:29:55,611 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:29:55,744 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:29:55,930 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:56,607 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:29:56,610 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:29:56,612 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:29:56,613 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:56,615 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:29:56,619 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:29:56,671 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:29:56,884 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_hmc_wf.fsl2itk".
 191014-05:29:57,206 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:29:57,208 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:57,209 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:29:57,211 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:29:57,325 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:29:57,356 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:29:57,642 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:29:58,543 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:29:58,546 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:29:58,548 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:29:58,549 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:29:58,552 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:29:58,553 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:29:58,558 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:29:58,561 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:58,567 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:58,570 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:29:58,578 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:29:58,618 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:29:58,633 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:29:58,740 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:29:58,882 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:29:58,992 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:29:59,15 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:00,592 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:00,595 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:00,597 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:30:00,598 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:30:00,599 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:00,600 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:00,602 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:00,606 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:00,611 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:00,611 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:00,613 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:00,649 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:00,664 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:00,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:00,947 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:01,488 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:02,28 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:30:02,561 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:02,565 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:02,567 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:02,568 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:02,569 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:02,572 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:02,573 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:02,576 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:30:02,579 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:30:02,583 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:30:02,584 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:30:02,587 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:30:02,587 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:30:02,591 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:30:02,598 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:30:02,602 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:30:02,796 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:02,798 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:02,842 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:02,869 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:02,967 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:04,231 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:04,608 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:30:04,636 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize
  Interface: nipype.interfaces.afni.utils.Unifize
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:30:04,639 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:04,644 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:04,645 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:04,648 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:04,649 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:04,651 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:04,652 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:04,655 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:30:04,658 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:04,661 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:04,928 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:04,944 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:04,979 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:06,461 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:06,658 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:06,661 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:06,663 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:06,666 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:06,907 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:08,628 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:08,632 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:08,634 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:08,638 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:08,715 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:08,770 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:30:08,921 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:30:09,100 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:09,903 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:10,596 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:10,601 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:10,604 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:30:10,606 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:10,610 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:10,612 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:30:10,842 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:10,862 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:11,182 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:30:11,191 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:30:11,687 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:11,698 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:12,499 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:12,635 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:12,638 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:12,639 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:12,643 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:12,644 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:12,647 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:12,648 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:12,652 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:30:12,653 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:12,748 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:30:12,751 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:30:12,773 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:12,799 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:13,26 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:14,53 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:14,733 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:14,736 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:14,738 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:14,739 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:14,739 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:14,743 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:14,743 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:14,747 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:14,755 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:14,760 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:30:14,762 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:30:14,766 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:30:14,775 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:30:14,784 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:30:15,64 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:15,298 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:15,405 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:15,588 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:15,875 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:15,981 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:16,726 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:16,730 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:16,733 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:16,733 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:16,735 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:16,736 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:16,736 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:16,740 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:16,740 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:16,743 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:16,744 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:16,748 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:16,793 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:16,805 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:16,830 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:30:16,877 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:17,308 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:18,579 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:18,583 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:18,583 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:18,585 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:18,587 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:18,588 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:18,589 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:18,593 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:30:18,594 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:30:18,601 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:30:18,608 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:30:18,613 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:30:18,780 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:18,816 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:18,826 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:18,910 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:19,235 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:20,56 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:20,688 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:20,691 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:20,692 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:20,694 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:20,696 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:20,699 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:20,700 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:20,703 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:20,757 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:20,849 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:20,978 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:21,1 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:21,307 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:30:21,342 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.check_hdr
  Interface: niworkflows.interfaces.images.MatchHeader
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:30:21,404 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:22,596 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:22,600 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:22,601 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:22,604 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:22,605 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:22,608 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:22,610 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:22,614 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:22,686 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:30:22,712 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:30:22,816 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:22,872 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:23,67 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:23,379 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:23,834 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:24,594 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:24,596 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:24,598 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:24,601 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:24,602 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:24,605 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:24,605 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:24,608 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:24,612 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:24,615 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:24,662 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:24,739 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:24,881 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:24,883 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:25,152 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:30:26,619 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:26,621 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:26,624 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:26,624 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:30:26,624 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:26,627 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:26,635 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:30:26,643 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:30:26,832 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:27,10 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:27,138 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:27,399 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:27,993 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:30:28,46 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:28,665 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:28,668 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:28,668 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:28,672 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:28,672 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:28,674 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:28,675 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:28,677 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:28,678 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:28,681 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:28,683 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:30:28,687 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:30:28,695 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:30:28,699 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:30:28,736 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:28,936 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:28,946 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:30,682 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:30:30,685 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:30,689 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:30,691 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:30:31,423 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:31,496 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:31,883 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:32,628 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:32,631 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:32,632 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:32,636 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:32,637 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:32,640 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:30:32,795 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:32,828 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:32,954 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.mcflirt".
 191014-05:30:33,8 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:33,986 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:34,691 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:34,693 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:34,694 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:34,698 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:34,698 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:34,701 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:34,703 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:34,705 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:34,710 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:34,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:34,967 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:35,222 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:35,300 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:30:35,313 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:30:35,337 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate
  Interface: nipype.interfaces.fsl.maths.DilateImage
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:30:35,342 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:35,347 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:36,163 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.mcflirt".
 191014-05:30:36,534 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:37,129 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:30:37,130 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_confounds_wf/fdisp".
 191014-05:30:37,133 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:30:37,146 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_confounds_wf.fdisp".
 191014-05:30:37,165 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.fsl2itk
  Interface: niworkflows.interfaces.itk.MCFLIRT2ITK
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:30:37,168 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:37,173 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_hmc_wf/fsl2itk".
 191014-05:30:37,174 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:37,177 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:37,177 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:37,181 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:37,184 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:37,233 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:37,244 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:30:37,281 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:30:37,592 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:37,753 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:38,477 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:38,721 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:38,723 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:38,725 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:38,728 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:30:38,730 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:38,732 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:38,733 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:38,737 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:38,737 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:38,740 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:38,751 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:38,789 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:38,964 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:41,162 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_confounds_wf/fdisp".
 191014-05:30:41,165 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:30:41,166 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:41,169 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:41,170 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:41,172 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:41,173 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:41,176 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:30:41,177 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:41,178 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_confounds_wf.fdisp".
 191014-05:30:41,263 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:30:41,336 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:41,337 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:41,364 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:41,439 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:41,464 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:30:42,179 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:42,473 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:30:42,613 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:42,617 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:42,617 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:42,620 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:42,620 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:42,624 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:30:42,624 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:30:42,628 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:30:42,881 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:43,184 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:44,632 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:44,634 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:44,638 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:44,642 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:44,643 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:30:44,646 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:30:44,687 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:44,913 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:46,587 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:30:46,590 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:30:46,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:46,593 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:46,740 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:30:47,156 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:30:48,646 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:30:48,651 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:30:48,914 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:30:49,488 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.mcflirt".
 191014-05:30:50,631 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:50,634 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:50,637 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:30:50,650 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:50,666 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.mcflirt".
 191014-05:30:50,744 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:30:50,873 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.mcflirt".
 191014-05:30:51,378 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:52,6 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:30:52,153 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:52,284 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.mcflirt".
 191014-05:30:52,635 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:30:52,662 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg
  Interface: nipype.interfaces.ants.registration.Registration
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:30:52,711 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:30:52,711 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:52,714 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:52,717 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:52,720 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:52,722 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:30:52,725 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:52,954 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:53,982 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:30:54,725 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:54,727 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:54,729 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:30:54,731 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:54,743 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:54,875 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:30:55,183 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.mcflirt".
 191014-05:30:55,264 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_confounds_wf/fdisp".
 191014-05:30:55,265 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:55,267 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:30:55,267 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:30:55,268 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:30:55,273 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:30:55,281 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_confounds_wf.fdisp".
 191014-05:30:55,566 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:30:55,670 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:30:57,193 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_confounds_wf/fdisp".
 191014-05:30:57,195 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:30:57,196 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:30:57,199 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:30:57,199 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:30:57,203 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:30:57,203 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:57,206 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:57,209 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_confounds_wf.fdisp".
 191014-05:30:57,805 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_confounds_wf/fdisp".
 191014-05:30:57,808 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:30:57,811 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:30:57,815 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:30:57,821 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_confounds_wf.fdisp".
 191014-05:30:57,852 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:30:58,677 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:30:58,680 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:30:58,701 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:58,704 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:58,720 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.normalize_motion".
 191014-05:30:58,730 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.normalize_motion" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_hmc_wf/normalize_motion".
 191014-05:30:58,733 nipype.workflow INFO:
   [Node] Running "normalize_motion" ("niworkflows.interfaces.utils.NormalizeMotionParams")
 191014-05:30:58,740 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:30:58,746 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.normalize_motion".
 191014-05:31:00,27 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:31:00,274 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_hmc_wf.fsl2itk".
 191014-05:31:00,650 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:31:00,653 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:31:00,656 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:31:00,657 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:31:00,692 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:31:00,864 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:31:01,194 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_confounds_wf/fdisp".
 191014-05:31:01,197 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:31:01,212 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_confounds_wf.fdisp".
 191014-05:31:01,733 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_confounds_wf.fdisp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_confounds_wf/fdisp".
 191014-05:31:01,737 nipype.workflow INFO:
   [Node] Running "fdisp" ("nipype.algorithms.confounds.FramewiseDisplacement")
 191014-05:31:01,752 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_confounds_wf.fdisp".
 191014-05:31:02,767 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:31:02,771 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:31:02,772 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:31:02,776 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:31:02,777 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_hmc_wf/fsl2itk".
 191014-05:31:02,806 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:31:03,28 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:31:03,363 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:31:04,373 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:31:04,644 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:31:04,674 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize
  Interface: niworkflows.interfaces.utils.CopyXForm
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:31:04,678 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:31:04,683 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:31:04,917 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:31:04,920 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:31:06,677 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:31:06,681 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:31:06,681 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:31:06,684 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:31:06,686 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:31:06,690 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:31:06,825 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:31:07,217 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:31:08,665 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:31:08,668 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:31:08,670 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:31:08,674 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:31:08,727 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:31:09,127 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:31:09,268 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:31:10,287 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:31:10,687 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks
  Interface: nipype.interfaces.fsl.maths.BinaryMaths
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_fixhdr_skullstrip2.pklz'

 191014-05:31:10,691 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:31:10,694 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:31:10,696 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:31:10,698 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:31:10,699 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:31:10,701 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:31:10,744 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:31:10,893 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:31:11,940 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:31:12,637 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:31:12,641 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz191014-05:31:12,642 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:31:12,646 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:31:12,648 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:31:12,651 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".

 191014-05:31:12,651 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:31:12,655 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:31:12,889 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:31:12,926 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:31:12,952 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:31:12,960 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:31:14,585 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:31:14,604 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:31:14,605 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:31:14,610 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:31:14,611 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:31:14,616 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:31:14,887 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:31:19,981 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:31:20,677 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:31:20,683 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:31:20,964 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:31:21,564 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:31:21,698 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:31:22,652 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:31:22,664 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:31:26,809 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_hmc_wf.fsl2itk".
 191014-05:31:28,710 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:31:28,719 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:32:06,420 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:32:08,781 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_hmc_wf/fsl2itk".
 191014-05:32:08,807 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:32:26,515 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:32:28,661 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:32:28,668 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:32:35,579 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_hmc_wf.fsl2itk".
 191014-05:32:36,707 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:32:36,717 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:32:49,128 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:32:50,700 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:32:50,707 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:33:19,935 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:33:20,770 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:33:20,777 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:33:27,347 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:33:28,814 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:33:28,823 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:34:24,761 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:34:26,839 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_hmc_wf/fsl2itk".
 191014-05:34:26,870 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:34:37,214 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:34:38,778 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:34:38,783 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:34:53,921 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_hmc_wf.fsl2itk".
 191014-05:34:54,863 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:34:54,871 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:35:20,327 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:35:20,803 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:35:20,812 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:36:53,74 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:36:54,886 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:36:54,894 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:38:52,876 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:38:55,90 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:38:55,96 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:40:08,167 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:40:09,152 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:40:09,155 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:40:09,157 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:40:09,159 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:40:09,160 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:40:09,162 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:40:09,164 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:40:09,168 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:40:09,292 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:40:09,316 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:40:09,455 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:40:11,98 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:40:11,101 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:40:11,101 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:40:11,104 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:40:11,106 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:40:11,108 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:40:11,321 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:40:11,713 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:40:11,766 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:40:13,660 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:40:13,664 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:40:13,665 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:40:13,667 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:40:13,668 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:40:13,670 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:40:13,722 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:40:13,728 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:40:15,177 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:40:15,180 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:40:15,182 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:40:15,186 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:40:15,387 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:40:15,396 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:40:16,374 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:40:17,184 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:40:17,188 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:40:17,188 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:40:17,191 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:40:17,194 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:40:17,197 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:40:17,365 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:40:17,463 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:40:17,466 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:40:19,177 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:40:19,181 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:40:19,656 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:40:19,871 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:40:21,260 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_transform".
 191014-05:40:21,286 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:40:47,767 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:40:49,189 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:40:49,192 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:40:57,91 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:40:59,217 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:40:59,225 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:41:01,745 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:41:03,207 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:41:03,210 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:41:03,211 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:41:03,212 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:41:03,215 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:41:03,218 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:41:03,273 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:41:03,516 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:41:05,212 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:41:05,215 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:41:05,218 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:41:05,222 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:41:05,446 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:41:05,516 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:41:07,729 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:41:07,734 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:41:07,734 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:41:07,738 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:41:08,16 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:41:15,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:41:17,554 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:41:19,228 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:41:19,239 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:41:22,127 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:41:23,908 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_transform".
 191014-05:41:23,936 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:41:58,183 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:41:59,243 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:41:59,246 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:41:59,248 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:41:59,503 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:41:59,510 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:42:01,227 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:42:01,244 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:42:01,531 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:42:03,765 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:42:03,771 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:42:11,712 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:42:13,827 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:42:15,229 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:42:15,233 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:42:17,952 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:42:19,240 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:42:19,243 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:42:25,581 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:42:27,93 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:42:27,253 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:42:27,294 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff
  Interface: niworkflows.interfaces.ants.AI
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:42:27,302 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:42:27,305 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:42:27,307 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:42:27,313 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:42:27,681 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:42:29,262 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:42:29,265 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:42:29,266 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:42:29,269 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:42:29,517 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:42:29,549 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:42:31,263 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:42:31,267 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:42:31,781 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:42:31,785 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:42:33,740 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:42:35,258 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:42:35,267 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:42:37,833 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:42:38,410 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:42:38,915 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:42:39,251 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:42:39,253 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:42:39,258 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:42:39,262 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:42:39,388 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_transform".
 191014-05:42:39,420 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:42:39,448 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:42:41,261 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:42:41,265 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:42:41,910 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:42:43,256 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:42:43,259 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:42:43,314 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:42:45,259 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:42:45,263 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz
 191014-05:42:45,480 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:42:47,218 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:42:47,221 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:42:47,518 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:42:51,87 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:42:53,246 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:42:53,250 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:42:55,458 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:42:57,853 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:42:57,857 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:43:06,287 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:43:07,294 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:43:07,592 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:43:12,485 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_transform".
 191014-05:43:13,347 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:43:13,355 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:43:13,815 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/merge".
 191014-05:43:13,836 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:43:16,986 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:43:19,291 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:43:19,295 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:43:19,409 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_transform".
 191014-05:43:19,438 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:43:20,863 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:43:23,292 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:43:23,296 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:43:26,140 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:43:27,302 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:43:27,306 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:43:34,473 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:43:35,299 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:43:35,303 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:43:38,43 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:43:38,87 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:43:39,310 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:43:39,313 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:43:39,594 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:43:41,311 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:43:41,315 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:43:41,317 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:43:41,630 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:43:49,228 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:43:51,245 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:43:51,248 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:43:51,391 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:43:53,347 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:43:53,351 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:43:53,911 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:43:55,322 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:43:55,325 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:43:55,380 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:43:56,44 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.merge".
 191014-05:43:56,90 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:43:57,328 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:43:57,332 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz
 191014-05:43:57,333 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:43:57,337 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:43:57,337 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:43:57,339 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:43:57,370 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:43:57,564 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:43:59,327 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:43:59,329 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:43:59,332 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:43:59,336 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:43:59,583 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:44:00,122 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:44:01,421 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:44:01,425 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:44:03,253 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.253341:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.253341:++ Authored by: RW Cox
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254312:** AFNI converts NIFTI_datatype=4 (INT16) in file /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254312:     Warnings of this type will be muted for this session.
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254312:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:44:03,254 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:  or viewing/combining it with volumes of differing obliquity,
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:  you should consider running: 
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:     3dWarp -deoblique 
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:  on this and  other oblique datasets in the same session.
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728: See 3dWarp -help for details.
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:44:03,255 nipype.interface INFO:
   stderr 2019-10-14T05:44:03.254728:++ Coarse del was 10, replaced with 7
 191014-05:44:11,801 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:44:13,340 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:44:13,344 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:44:13,603 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:44:15,294 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:44:15,298 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:44:15,346 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_transform".
 191014-05:44:17,387 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:44:17,392 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:44:17,766 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/merge".
 191014-05:44:17,787 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:44:22,792 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:44:23,334 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:44:23,337 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:44:23,474 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:44:24,168 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:44:25,264 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:44:25,268 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:44:25,274 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:44:25,281 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:44:25,789 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:44:26,921 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:44:27,255 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2
  Interface: niworkflows.interfaces.utils.CopyXForm
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_skullstrip_second_pass.pklz'

 191014-05:44:27,258 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:44:27,263 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:44:27,317 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:44:29,351 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:44:29,355 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz
 191014-05:44:29,357 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:44:29,362 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:44:29,453 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_hmc_wf/fsl2itk".
 191014-05:44:29,486 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:44:29,578 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:44:31,276 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:44:31,279 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:44:31,536 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:44:42,978 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:44:45,305 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:44:45,315 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:44:47,860 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:44:51,356 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:44:51,652 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:44:53,405 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_hmc_wf.fsl2itk".
 191014-05:44:55,359 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:44:55,368 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:44:56,126 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.merge".
 191014-05:44:57,398 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:44:57,400 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:44:57,435 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:44:59,381 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:44:59,383 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:45:03,626 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.625711:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:45:03,627 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.625711:++ Authored by: RW Cox
 191014-05:45:03,627 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:** AFNI converts NIFTI_datatype=4 (INT16) in file /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
 191014-05:45:03,627 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:     Warnings of this type will be muted for this session.
 191014-05:45:03,627 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
 191014-05:45:03,628 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:45:03,628 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:45:03,628 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:  or viewing/combining it with volumes of differing obliquity,
 191014-05:45:03,628 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:  you should consider running: 
 191014-05:45:03,628 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:     3dWarp -deoblique 
 191014-05:45:03,629 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:  on this and  other oblique datasets in the same session.
 191014-05:45:03,629 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484: See 3dWarp -help for details.
 191014-05:45:03,629 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:45:03,629 nipype.interface INFO:
   stderr 2019-10-14T05:45:03.627484:++ Coarse del was 10, replaced with 7
 191014-05:45:06,285 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:45:07,376 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:45:07,380 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:45:10,227 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:45:11,382 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:45:11,386 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:45:21,298 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:45:23,378 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:45:23,381 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:45:23,604 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:45:25,373 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:45:25,377 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:45:32,808 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:45:33,401 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:45:33,404 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:45:33,554 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:45:33,879 nipype.interface INFO:
   stderr 2019-10-14T05:45:33.879177:++ Max displacement in automask = 0.36 (mm) at sub-brick 4
 191014-05:45:33,880 nipype.interface INFO:
   stderr 2019-10-14T05:45:33.879177:++ Max delta displ  in automask = 0.36 (mm) at sub-brick 4
 191014-05:45:35,381 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:45:35,385 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:45:35,898 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:45:36,258 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:45:37,378 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:45:37,381 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:45:37,382 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:45:37,384 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:45:37,391 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:45:37,397 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:45:37,529 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:45:37,710 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:45:39,124 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
 191014-05:45:39,400 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:45:39,403 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz
 191014-05:45:39,404 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:45:39,407 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:45:39,593 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:45:39,752 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:45:40,120 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_transform".
 191014-05:45:41,399 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:45:41,404 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:45:41,941 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:45:41,944 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:45:42,233 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:45:42,352 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/merge".
 191014-05:45:42,385 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:45:42,471 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference
  Interface: niworkflows.interfaces.registration.ANTSApplyTransformsRPT
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_to_ants.pklz'

 191014-05:45:42,476 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:45:42,485 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:45:48,12 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:45:49,369 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:45:49,379 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:45:50,44 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:45:51,735 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:45:53,381 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:45:53,386 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:45:53,477 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_transform".
 191014-05:45:53,518 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:46:08,537 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:46:09,420 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:46:09,424 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:46:11,948 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:46:15,407 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:46:15,604 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:46:20,491 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_transform".
 191014-05:46:21,443 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:46:21,447 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:46:21,792 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/merge".
 191014-05:46:21,817 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:46:26,856 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.merge".
 191014-05:46:27,450 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:46:27,452 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:46:27,481 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:46:28,320 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:46:29,435 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:46:29,437 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:46:29,444 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:46:29,450 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:46:29,802 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:46:31,433 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:46:31,437 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:46:33,605 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:46:33,605 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.605261:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:46:33,605 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.605261:++ Authored by: RW Cox
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606001:** AFNI converts NIFTI_datatype=4 (INT16) in file /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606001:     Warnings of this type will be muted for this session.
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606001:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:  or viewing/combining it with volumes of differing obliquity,
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:  you should consider running: 
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:     3dWarp -deoblique 
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:  on this and  other oblique datasets in the same session.
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312: See 3dWarp -help for details.
 191014-05:46:33,606 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:46:33,607 nipype.interface INFO:
   stderr 2019-10-14T05:46:33.606312:++ Coarse del was 10, replaced with 7
 191014-05:46:33,930 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:46:35,411 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:46:35,415 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:46:35,418 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:46:35,422 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:46:35,428 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:46:35,436 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:46:37,612 nipype.interface INFO:
   stderr 2019-10-14T05:46:37.612710:++ Max displacement in automask = 0.25 (mm) at sub-brick 1
 191014-05:46:37,613 nipype.interface INFO:
   stderr 2019-10-14T05:46:37.612710:++ Max delta displ  in automask = 0.29 (mm) at sub-brick 2
 191014-05:46:38,24 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:46:39,415 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:46:39,419 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:46:39,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_hmc_wf/fsl2itk".
 191014-05:46:39,517 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:46:43,205 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
 191014-05:46:44,136 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:46:45,455 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:46:45,461 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:46:45,800 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:46:47,451 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:46:47,457 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:46:48,967 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:46:50,999 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:46:51,464 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:46:51,467 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:46:52,979 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:46:53,371 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:46:53,406 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
  Interface: niworkflows.interfaces.ants.AI
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:46:53,411 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:46:53,417 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:46:53,519 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:46:54,722 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:46:55,417 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:46:55,420 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:46:55,588 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:46:56,4 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:46:56,9 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:46:57,484 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:46:57,488 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:46:57,491 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:46:57,774 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:46:58,112 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:46:58,398 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:46:59,476 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:46:59,479 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:46:59,548 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:46:59,895 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:01,490 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:47:01,494 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:47:01,501 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:01,506 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:01,510 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:01,601 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:47:01,725 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:47:03,466 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_confounds_wf.dvars" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_confounds_wf/dvars".
 191014-05:47:03,470 nipype.workflow INFO:
   [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
 191014-05:47:03,472 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:47:03,476 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:47:03,762 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:47:04,65 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:04,533 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_hmc_wf.fsl2itk".
 191014-05:47:05,420 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.merge".
 191014-05:47:05,464 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:47:05,512 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask
  Interface: niworkflows.interfaces.fixes.FixHeaderApplyTransforms
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:47:05,516 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:05,525 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:05,535 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:05,539 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:05,540 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:05,544 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:07,557 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:47:07,560 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:47:07,590 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:47:09,451 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:47:09,455 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:47:11,588 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
 191014-05:47:12,457 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:47:12,550 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:12,690 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  z[index] = x
 191014-05:47:13,465 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:13,469 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:13,911 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:47:13,915 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:47:13,922 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:13,929 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:16,61 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:47:16,251 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:16,481 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:47:17,522 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:47:17,524 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:47:17,526 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:47:17,531 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:17,533 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:47:17,536 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:17,544 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:17,557 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:20,135 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:47:20,140 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:20,142 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:47:20,295 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:21,473 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:47:21,477 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:47:21,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:21,484 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:47:21,488 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:47:21,490 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:21,491 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:21,495 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:21,498 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:21,506 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:23,917 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:47:24,229 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:26,5 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:26,12 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:26,99 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_hmc_wf/fsl2itk".
 191014-05:47:26,126 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:47:26,400 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:47:27,573 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:27,579 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:47:27,583 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:47:27,757 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:47:27,832 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:47:28,417 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:29,434 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:47:29,440 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:47:29,446 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:29,452 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:30,576 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:47:31,43 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:47:31,465 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:47:31,469 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:47:31,729 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:47:31,957 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:32,470 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:47:33,465 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:47:33,468 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:47:33,473 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:47:33,473 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:47:33,476 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:47:33,476 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:47:33,482 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:33,486 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:34,791 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:47:35,468 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:47:35,472 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:47:35,952 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:47:36,781 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:47:37,479 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:47:37,482 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:47:37,643 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:47:37,782 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:47:38,71 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:47:38,117 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff
  Interface: niworkflows.interfaces.ants.AI
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:47:38,123 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:38,130 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:39,497 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:47:39,503 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:47:39,504 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:39,580 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:47:39,993 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:47:40,148 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:47:40,526 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:47:41,470 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:47:41,473 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:47:41,475 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:47:41,476 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:47:41,479 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:47:41,482 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:47:41,532 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:47:41,629 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:47:42,341 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:47:43,473 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:47:43,476 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:47:43,477 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:47:43,480 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz191014-05:47:43,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".

 191014-05:47:43,485 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:47:43,692 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:47:43,898 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:47:44,8 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:47:44,777 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:45,711 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:47:46,13 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:47:46,16 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:47:46,17 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:47:46,19 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:47:46,74 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:47:46,75 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:47:46,292 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:47:46,544 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:47:46,552 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:47:47,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:47:47,549 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:47:47,550 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:47,554 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:47:47,557 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:47:47,558 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:47,564 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:47:47,567 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:47:47,659 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:47:47,717 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:47:47,796 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:47:48,248 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:47:49,513 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:47:49,516 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:47:49,521 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:47:49,525 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:47:49,755 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:47:49,772 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:47:52,14 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:52,18 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:52,422 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_hmc_wf.fsl2itk".
 191014-05:47:53,351 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:47:53,490 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:47:53,496 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:47:53,500 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:47:53,587 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:47:55,487 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:47:55,492 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:47:56,850 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:47:57,495 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:47:57,499 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:47:57,798 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:47:58,361 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:47:59,267 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:47:59,477 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:47:59,482 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:47:59,483 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:47:59,487 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:48:01,152 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:48:01,270 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:01,522 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:48:01,530 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:48:01,842 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:02,419 nipype.interface INFO:
   stderr 2019-10-14T05:48:02.419506:++ Max displacement in automask = 0.42 (mm) at sub-brick 3
 191014-05:48:02,419 nipype.interface INFO:
   stderr 2019-10-14T05:48:02.419506:++ Max delta displ  in automask = 0.28 (mm) at sub-brick 3
 191014-05:48:03,464 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:48:03,523 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
  Interface: nipype.interfaces.fsl.preprocess.BET
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_n4_correct.pklz'

 191014-05:48:03,526 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:48:03,531 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:48:03,532 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:48:03,535 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:48:03,541 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:48:03,549 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:48:04,749 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:48:05,539 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:48:05,542 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:48:05,547 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:48:05,551 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:48:06,158 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:48:06,469 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:48:06,721 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:48:07,472 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:48:07,475 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:07,475 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:48:07,479 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:48:07,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:48:07,484 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:48:07,534 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:48:07,610 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:48:07,655 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
 191014-05:48:07,791 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:48:07,858 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:08,204 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:09,463 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:48:09,468 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:48:09,468 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:48:09,474 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:48:09,922 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:09,925 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:48:09,926 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:09,929 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:48:10,138 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:48:10,216 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:10,459 nipype.utils ERROR:
   No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
 191014-05:48:10,515 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask
  Interface: niworkflows.interfaces.fixes.FixHeaderApplyTransforms
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 311, in load_resultfile
    if resolve and result.outputs:

 AttributeError: 'NoneType' object has no attribute 'outputs'

 191014-05:48:10,519 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:48:10,633 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:48:10,678 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_hmc_wf/fsl2itk".
 191014-05:48:10,738 nipype.workflow INFO:
   [Node] Running "fsl2itk" ("niworkflows.interfaces.itk.MCFLIRT2ITK")
 191014-05:48:11,513 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:48:11,516 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:11,516 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:11,520 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:11,572 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:48:12,553 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:48:13,634 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:48:13,638 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:48:13,639 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:48:13,643 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:48:13,839 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:48:15,595 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_confounds_wf.dvars" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_confounds_wf/dvars".
 191014-05:48:15,600 nipype.workflow INFO:
   [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
 191014-05:48:15,946 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:48:16,594 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:16,848 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:17,482 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:48:17,486 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_pass_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:48:17,489 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:48:17,493 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:17,495 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:48:17,496 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:17,747 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:17,785 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:48:18,239 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:48:18,809 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:48:19,537 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:19,541 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:48:19,543 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:19,544 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:19,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:19,550 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:48:19,551 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:48:19,633 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:48:19,681 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:48:19,856 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:20,44 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:48:21,524 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:48:21,526 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:48:21,544 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:48:21,544 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:48:21,544 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:21,548 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:48:21,549 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:48:21,553 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:48:22,107 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:48:22,862 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:23,615 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:48:23,618 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:23,621 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:23,625 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:48:23,630 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:48:23,684 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:48:23,932 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:24,249 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  z[index] = x
 191014-05:48:25,436 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:48:25,438 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:25,440 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:48:25,442 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:48:25,693 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:48:25,980 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate
  Interface: nipype.interfaces.fsl.maths.DilateImage
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_map_brainmask.pklz'

 191014-05:48:25,983 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:48:25,989 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:48:26,996 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:48:27,501 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:48:27,505 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:48:27,507 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:48:27,602 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:48:27,775 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:48:28,143 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:48:28,812 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:48:29,508 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:48:29,513 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:29,519 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:48:29,524 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:48:29,526 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:29,527 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:48:29,658 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:48:29,689 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:48:31,552 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:48:31,577 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:48:31,579 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:48:31,583 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:48:32,43 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:48:32,124 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:48:32,578 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:48:33,503 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:33,533 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:48:33,536 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:33,538 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:48:33,541 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:33,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:48:33,548 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:33,597 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:48:33,604 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:48:33,690 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:48:34,965 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_01_wf.bold_confounds_wf.dvars".
 191014-05:48:35,229 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:48:35,499 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks
  Interface: nipype.interfaces.fsl.maths.BinaryMaths
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_fixhdr_skullstrip2.pklz'

 191014-05:48:35,502 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:48:35,506 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:48:35,507 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:48:35,509 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:48:35,510 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:48:35,513 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:48:35,514 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:48:35,518 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:48:35,729 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:48:35,752 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:48:36,174 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:48:38,91 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:48:38,731 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:48:38,734 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:48:38,735 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_confounds_wf.dvars" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_confounds_wf/dvars".
 191014-05:48:38,738 nipype.workflow INFO:
   [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
 191014-05:48:38,739 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:48:38,742 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:48:38,743 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_02_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:48:38,746 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:48:38,747 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:48:38,750 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:48:38,808 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:48:39,39 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:48:39,47 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:48:39,586 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:48:39,589 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:48:39,591 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:48:39,592 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:48:39,821 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:48:41,180 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:48:41,559 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:48:41,563 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:48:41,886 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:48:42,434 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:44,219 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:48:44,222 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:48:44,225 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:48:44,314 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/merge/template.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output template_corrected.nii.gz -r
 191014-05:48:45,477 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:48:45,676 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:48:46,523 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:48:47,546 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:48:47,550 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:48:47,985 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:48,259 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_hmc_wf.fsl2itk".
 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  z[index] = x
 191014-05:48:49,451 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:48:49,455 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:49,458 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:49,459 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:48:49,747 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:51,519 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:51,523 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:48:52,268 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_transform".
 191014-05:48:53,607 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:48:53,607 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/merge".
 191014-05:48:53,616 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:48:53,639 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:48:55,808 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:48:56,174 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:48:57,540 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:48:57,544 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:48:57,550 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:48:57,555 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:48:57,555 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.inu_n4" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4".
 191014-05:48:57,563 nipype.workflow INFO:
   [Node] Setting-up "_inu_n40" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
 191014-05:48:57,568 nipype.workflow INFO:
   [Node] Running "_inu_n40" ("nipype.interfaces.ants.segmentation.N4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0/12345_T1w_maths.nii.gz --convergence [ 50x50x50x50, 1e-07 ] --output 12345_T1w_maths_corrected.nii.gz --shrink-factor 4
 191014-05:48:57,819 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:48:59,141 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:48:59,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:48:59,549 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:48:59,567 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:49:00,55 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:49:01,586 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:49:01,589 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:49:01,590 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:49:01,592 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:01,593 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:49:01,597 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/n4_correct/template_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -f 0.20 -m
 191014-05:49:01,742 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:49:03,495 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:49:03,513 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:49:04,140 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:49:04,238 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:49:04,259 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:49:05,625 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:49:05,628 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:49:05,628 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:49:05,632 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:05,633 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:49:05,646 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz
 191014-05:49:05,684 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:49:06,512 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:49:07,237 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:49:07,549 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:49:07,551 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:49:07,552 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:49:07,555 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:49:07,775 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:49:08,817 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:49:09,552 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:49:09,556 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:49:09,556 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:49:09,559 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:09,590 nipype.interface WARNING:
   q-forms of reference and mask are substantially different
 191014-05:49:09,697 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:49:09,822 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:49:11,541 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:49:11,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:49:11,545 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:49:11,610 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:49:12,107 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:49:13,626 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:49:13,629 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:13,677 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:49:15,525 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:49:15,528 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:49:15,747 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:49:15,819 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:49:16,821 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:49:17,628 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:49:17,631 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:49:17,631 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:49:17,635 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:49:17,635 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:49:17,639 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/template_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/template_corrected_brain_masked.nii.gz
 191014-05:49:17,896 nipype.workflow INFO:
     [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:49:17,915 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:49:17,937 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:49:19,577 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:49:19,589 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:49:19,590 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:49:19,594 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/unifize/template_corrected_brain_masked.nii.gz
 191014-05:49:21,604 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:49:23,559 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:49:23,563 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:49:26,60 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:49:27,455 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:49:27,571 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:49:27,574 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:49:27,917 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:49:29,575 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:49:29,579 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:29,580 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:49:29,583 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:29,698 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:49:29,763 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:49:31,563 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:49:31,566 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:49:31,568 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:49:31,570 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:49:31,824 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:49:32,92 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:49:32,159 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:49:33,603 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:49:33,606 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:33,607 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:49:33,610 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:33,612 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:49:33,615 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:49:33,663 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:49:33,670 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:49:33,834 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:49:35,542 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:49:35,545 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:49:35,546 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:49:35,547 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:49:35,548 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/template_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz
 191014-05:49:35,550 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:49:35,720 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:49:35,744 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:49:37,562 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_confounds_wf.dvars" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_confounds_wf/dvars".
 191014-05:49:37,566 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:49:37,566 nipype.workflow INFO:
   [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
 191014-05:49:37,569 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_01_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:49:37,571 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:49:37,575 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/combine_masks/template_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:49:37,832 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:49:37,837 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:49:39,316 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.merge".
 191014-05:49:39,978 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:49:41,571 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:49:41,574 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:41,583 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:49:41,585 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:49:41,616 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:49:41,670 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:49:43,568 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:49:43,571 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:49:43,572 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:49:43,576 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:49:43,909 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:49:45,557 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:49:45,574 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:49:45,621 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:49:46,815 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_pass_run_02_wf.bold_confounds_wf.dvars".
 191014-05:49:47,697 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:49:47,729 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.729438:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.729438:++ Authored by: RW Cox
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730322:** AFNI converts NIFTI_datatype=4 (INT16) in file /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730322:     Warnings of this type will be muted for this session.
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730322:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:49:47,730 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:  or viewing/combining it with volumes of differing obliquity,
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:  you should consider running: 
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:     3dWarp -deoblique 
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:  on this and  other oblique datasets in the same session.
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681: See 3dWarp -help for details.
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:49:47,731 nipype.interface INFO:
   stderr 2019-10-14T05:49:47.730681:++ Coarse del was 10, replaced with 7
 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  z[index] = x
 191014-05:49:48,496 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:49:48,498 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:49:48,681 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:49:49,538 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:49:49,541 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:49:49,545 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:49:49,545 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:49:49,756 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:50:13,447 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_02_wf.bold_confounds_wf.dvars".
 191014-05:50:40,612 nipype.workflow INFO:
   [Node] Finished "_inu_n40".
 191014-05:50:40,614 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.inu_n4".
 191014-05:50:41,616 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:50:41,618 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.lap_target" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/lap_target".
 191014-05:50:41,621 nipype.workflow INFO:
   [Node] Running "lap_target" ("niworkflows.interfaces.ants.ImageMath"), a CommandLine Interface with command:
 ImageMath 3 12345_T1w_maths_corrected_maths.nii.gz Laplacian /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/12345_T1w_maths_corrected.nii.gz 1.5 1
 191014-05:50:41,621 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.res_target" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/res_target".
 191014-05:50:41,624 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:50:41,625 nipype.workflow INFO:
   [Node] Running "res_target" ("niworkflows.interfaces.ants.ResampleImageBySpacing"), a CommandLine Interface with command:
 ResampleImageBySpacing 3 /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/12345_T1w_maths_corrected.nii.gz 12345_T1w_maths_corrected_resampled.nii.gz 4 4 4 1
 191014-05:50:44,102 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.res_target".
 191014-05:50:44,735 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:50:45,599 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:50:45,612 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:50:54,786 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.lap_target".
 191014-05:50:55,601 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.mrg_target" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/mrg_target".
 191014-05:50:55,604 nipype.workflow INFO:
   [Node] Running "mrg_target" ("nipype.interfaces.utility.base.Merge")
 191014-05:50:55,609 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.mrg_target".
 191014-05:51:14,894 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_01_wf.bold_confounds_wf.dvars".
 191014-05:51:17,199 nipype.interface INFO:
   stderr 2019-10-14T05:51:17.199346:++ Max displacement in automask = 0.52 (mm) at sub-brick 3
 191014-05:51:17,199 nipype.interface INFO:
   stderr 2019-10-14T05:51:17.199346:++ Max delta displ  in automask = 0.62 (mm) at sub-brick 3
 191014-05:51:22,789 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref".
 191014-05:51:23,634 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:51:23,637 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:51:30,873 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:51:31,613 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:51:31,621 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:51:33,159 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:51:35,674 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:51:35,678 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/ref_bold.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:51:41,737 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:51:43,650 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/fmap2ref_reg".
 191014-05:51:43,656 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_matching_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:51:50,163 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:51:51,606 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:51:51,617 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:51:54,378 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:51:56,274 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/fmap2ref_reg".
 191014-05:51:56,292 nipype.workflow INFO:
   [Node] Running "fmap2ref_reg" ("nipype.interfaces.ants.registration.Registration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ transform, transform_Warped.nii.gz ] --transform Translation[ 0.05 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 500, 1e-07, 200 ] --smoothing-sigmas 8.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --transform Rigid[ 0.01 ] --metric Mattes[ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/prepare_epi_opposite_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz, 1, 64, Random, 0.5 ] --convergence [ 200, 1e-08, 100 ] --smoothing-sigmas 2.0mm --shrink-factors 1 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.005, 0.998 ]  --write-composite-transform 1
 191014-05:52:37,943 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:52:39,686 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:52:39,843 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected.nii.gz -r
 191014-05:52:52,897 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_opposite_wf.fmap2ref_reg".
 191014-05:52:53,635 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_06_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:52:53,643 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_06_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:52:54,347 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:52:55,683 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:52:55,688 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -f 0.20 -m
 191014-05:52:58,58 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:52:59,703 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:52:59,707 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz
 191014-05:53:01,264 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.prepare_epi_matching_wf.fmap2ref_reg".
 191014-05:53:03,682 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp".
 191014-05:53:03,690 nipype.workflow INFO:
   [Node] Running "qwarp" ("nipype.interfaces.afni.preprocess.QwarpPlusMinus"), a CommandLine Interface with command:
 3dQwarp -prefix Qwarp.nii.gz -plusminus -noXdis  -noZdis -base /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped.nii.gz -blur -1.0 -1.0 -source /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/qwarp/transform_Warped_c0000.nii.gz -minpatch 9 -nopadWARP -noweight -pblur 0.05 0.05
 191014-05:53:08,24 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:53:09,688 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:53:09,691 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_brain_masked.nii.gz
 191014-05:53:09,950 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:53:11,654 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:53:11,658 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_brain_masked.nii.gz
 191014-05:53:19,214 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:53:21,702 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:53:21,704 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:53:21,834 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:53:23,712 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:53:23,716 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:53:24,374 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:53:25,732 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:53:25,734 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:53:25,790 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:53:27,669 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:53:27,673 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz
 191014-05:53:27,864 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:53:29,747 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_confounds_wf.dvars" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_confounds_wf/dvars".
 191014-05:53:29,750 nipype.workflow INFO:
   [Node] Running "dvars" ("nipype.algorithms.confounds.ComputeDVARS")
 191014-05:53:29,750 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:53:29,754 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_03_wf/bold_bold_trans_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:53:30,56 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_bold_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 /usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
  z[index] = x
 191014-05:54:20,84 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:54:21,823 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:54:21,825 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:54:21,828 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/init_aff".
 191014-05:54:21,831 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz -m Mattes[/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/res_tmpl/tpl-OASIS30ANTs_res-01_T1w_resampled.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/res_target/12345_T1w_maths_corrected_resampled.nii.gz,32,Regular,0.250000] -o initialization.mat -p 0 -s [15.000000,0.100000] -t Affine[0.100000] -v 1
 191014-05:54:22,148 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:54:23,784 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:54:23,787 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:54:24,62 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:54:26,89 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.init_aff".
 191014-05:54:26,214 nipype.workflow WARNING:
   Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:

  Node: fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference
  Interface: niworkflows.interfaces.registration.ANTSApplyTransformsRPT
  Traceback:
 Traceback (most recent call last):

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/plugins/base.py", line 337, in _local_hash_check
    cached, updated = self.procs[jobid].is_cached()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 297, in is_cached
    hashed_inputs, hashvalue = self._get_hashval()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 494, in _get_hashval
    self._get_inputs()

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 521, in _get_inputs
    outputs = _load_resultfile(results_file)[0].outputs

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/pipeline/engine/utils.py", line 300, in load_resultfile
    result = loadpkl(results_file)

  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/utils/filemanip.py", line 687, in loadpkl
    pkl_file = pklopen(infile.name, 'rb')

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 53, in open
    binary_file = GzipFile(filename, gz_mode, compresslevel)

  File "/usr/local/miniconda/lib/python3.7/gzip.py", line 163, in __init__
    fileobj = self.myfileobj = builtins.open(filename, mode or 'rb')

 FileNotFoundError: [Errno 2] No such file or directory: 'result_to_ants.pklz'

 191014-05:54:26,217 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:54:26,225 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:54:27,850 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_transform".
 191014-05:54:27,887 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:54:33,873 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:54:57,296 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_03_wf.bold_confounds_wf.dvars".
 191014-05:55:00,860 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff".
 191014-05:55:00,864 nipype.workflow INFO:
   [Node] Running "init_aff" ("niworkflows.interfaces.ants.AI"), a CommandLine Interface with command:
 antsAI -c [10,0.000001,10] -d 3 -x /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz -m Mattes[/home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz,/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz,32,Regular,0.200000] -o initialization.mat -p 0 -s [20.000000,0.120000] -t Affine[0.100000] -v 1
 191014-05:55:09,388 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.init_aff".
 191014-05:55:11,779 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm".
 191014-05:55:11,786 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation Linear --output transform --transform Affine[ 0.1 ] --metric Mattes[ /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz, 1, 64, Random, 0.2 ] --convergence [ 200, 1e-09, 10 ] --smoothing-sigmas 2.0mm --shrink-factors 2 --use-estimate-learning-rate-once 1 --use-histogram-matching 1 --winsorize-image-intensities [ 0.05, 0.98 ]  --write-composite-transform 0
 191014-05:55:13,895 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.norm".
 191014-05:55:15,794 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
 191014-05:55:15,798 nipype.workflow INFO:
   [Node] Running "map_brainmask" ("niworkflows.interfaces.fixes.FixHeaderApplyTransforms"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --float 1 --input /home/fmriprep/.cache/templateflow/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz --interpolation MultiLabel --output tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference/ref_bold_corrected_trans.nii.gz --transform [ /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/norm/transform0GenericAffine.mat, 1 ]
 191014-05:55:30,323 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.map_brainmask".
 191014-05:55:31,792 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate".
 191014-05:55:31,795 nipype.workflow INFO:
   [Node] Running "pre_mask_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/map_brainmask/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans.nii.gz -kernel sphere 3.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/pre_mask_dilate/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil.nii.gz
 191014-05:55:34,801 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.pre_mask_dilate".
 191014-05:55:36,264 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.brain_extraction_wf.norm" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/norm".
 191014-05:55:36,273 nipype.workflow INFO:
   [Node] Running "norm" ("niworkflows.interfaces.fixes.FixHeaderRegistration"), a CommandLine Interface with command:
 antsRegistration --collapse-output-transforms 1 --dimensionality 3 --float 1 --initial-moving-transform [ /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/init_aff/initialization.mat, 0 ] --initialize-transforms-per-stage 0 --interpolation LanczosWindowedSinc --output [ anat_to_template, anat_to_template_Warped.nii.gz ] --transform Rigid[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/12345_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform Affine[ 0.1 ] --metric MI[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/12345_T1w_maths_corrected.nii.gz, 1, 32, Regular, 0.25 ] --convergence [ 1000x500x250x100, 1e-08, 10 ] --smoothing-sigmas 4.0x2.0x1.0x0.0vox --shrink-factors 8x4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] --transform SyN[ 0.1, 3.0, 0.0 ] --metric CC[ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_T1w.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40/12345_T1w_maths_corrected.nii.gz, 0.5, 4, None, 1 ] --metric CC[ /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/lap_tmpl/tpl-OASIS30ANTs_res-01_T1w_maths.nii.gz, /scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/brain_extraction_wf/lap_target/12345_T1w_maths_corrected_maths.nii.gz, 0.5, 4, None, 1 ] --convergence [ 50x10x0, 1e-09, 15 ] --smoothing-sigmas 2.0x1.0x0.0vox --shrink-factors 4x2x1 --use-histogram-matching 1 --masks [ /home/fmriprep/.cache/templateflow/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz, NULL ] -v --winsorize-image-intensities [ 0.025, 0.975 ]  --write-composite-transform 0
 191014-05:57:35,942 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.bold_transform".
 191014-05:57:38,21 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct".
 191014-05:57:38,286 nipype.workflow INFO:
   [Node] Running "n4_correct" ("niworkflows.interfaces.fixes.FixN4BiasFieldCorrection"), a CommandLine Interface with command:
 N4BiasFieldCorrection --bspline-fitting [ 200 ] -d 3 --input-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_scaled.nii.gz --mask-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/check_hdr/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask_trans_dil_hdr.nii.gz --output ref_bold_corrected_trans_corrected.nii.gz -r
 191014-05:57:38,481 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.merge" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/merge".
 191014-05:57:38,511 nipype.workflow INFO:
   [Node] Running "merge" ("fmriprep.interfaces.nilearn.Merge")
 191014-05:57:53,85 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.n4_correct".
 191014-05:57:53,946 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
 191014-05:57:53,949 nipype.workflow INFO:
   [Node] Running "skullstrip_first_pass" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
 bet /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected_trans_corrected.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -f 0.20 -m
 191014-05:57:56,16 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass".
 191014-05:57:56,80 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:57:57,938 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate".
 191014-05:57:57,941 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:57:57,943 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:57:57,943 nipype.workflow INFO:
   [Node] Running "skullstrip_first_dilate" ("nipype.interfaces.fsl.maths.DilateImage"), a CommandLine Interface with command:
 fslmaths -dt char /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -kernel sphere 6.0000 -dilF /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz
 191014-05:57:57,948 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/scratch/fmriprep_wf/single_subject_12345_wf/anat_preproc_wf/surface_recon_wf/autorecon1".
 191014-05:57:57,953 nipype.workflow INFO:
   [Node] Running "autorecon1" ("nipype.interfaces.freesurfer.preprocess.ReconAll"), a CommandLine Interface with command:
 recon-all -autorecon1 -i /data/12345/anat/12345_T1w.nii.gz -noskullstrip -openmp 8 -subjid 12345 -sd /out/freesurfer
 191014-05:57:58,231 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:57:59,864 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:57:59,867 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function")
 191014-05:58:00,162 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.to_ants".
 191014-05:58:02,463 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/unwarp_reference".
 191014-05:58:02,467 nipype.workflow INFO:
   [Node] Running "unwarp_reference" ("niworkflows.interfaces.registration.ANTSApplyTransformsRPT"), a CommandLine Interface with command:
 antsApplyTransforms --default-value 0 --dimensionality 3 --float 1 --input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --interpolation LanczosWindowedSinc --output ref_bold_corrected_trans.nii.gz --reference-image /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_reference_wf/enhance_and_skullstrip_bold_wf/n4_correct/ref_bold_corrected.nii.gz --transform /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp/_warpfieldQwarp_PLUS_WARP_fixhdr.nii.gz
 191014-05:58:06,276 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_dilate".
 191014-05:58:07,963 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask".
 191014-05:58:07,966 nipype.workflow INFO:
   [Node] Running "skullstrip_first_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_dilate/ref_bold_corrected_trans_corrected_brain_mask_dil.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_mask/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:58:08,212 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_mask".
 191014-05:58:08,359 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.sdc_wf.pepolar_unwarp_wf.unwarp_reference".
 191014-05:58:09,958 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize".
 191014-05:58:09,963 nipype.workflow INFO:
   [Node] Running "unifize" ("nipype.interfaces.afni.utils.Unifize"), a CommandLine Interface with command:
 3dUnifize -clfrac 0.2 -rbt 18.3 65.0 90.0 -prefix uni.nii.gz -T2 -input /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/unifize/ref_bold_corrected_trans_corrected_brain_masked.nii.gz
 191014-05:58:16,796 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.unifize".
 191014-05:58:17,954 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
 191014-05:58:17,956 nipype.workflow INFO:
   [Node] Running "fixhdr_unifize" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:58:18,99 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize".
 191014-05:58:19,916 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
 191014-05:58:19,920 nipype.workflow INFO:
   [Node] Running "skullstrip_second_pass" ("nipype.interfaces.afni.preprocess.Automask"), a CommandLine Interface with command:
 3dAutomask -apply_prefix uni_xform_masked.nii.gz -dilate 1 -prefix uni_xform_mask.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass/uni_xform.nii.gz
 191014-05:58:20,389 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass".
 191014-05:58:21,148 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.merge".
 191014-05:58:21,973 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
 191014-05:58:21,976 nipype.workflow INFO:
   [Node] Running "fixhdr_skullstrip2" ("niworkflows.interfaces.utils.CopyXForm")
 191014-05:58:21,982 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_reference_wf/validate".
 191014-05:58:21,984 nipype.workflow INFO:
   [Node] Running "validate" ("niworkflows.interfaces.images.ValidateImage")
 191014-05:58:22,15 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.bold_reference_wf.validate".
 191014-05:58:22,43 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2".
 191014-05:58:23,958 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.bold_bold_trans_wf.bold_reference_wf.gen_ref" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref".
 191014-05:58:23,960 nipype.workflow INFO:
   [Node] Running "gen_ref" ("niworkflows.interfaces.registration.EstimateReferenceImage")
 191014-05:58:23,962 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks".
 191014-05:58:23,966 nipype.workflow INFO:
   [Node] Running "combine_masks" ("nipype.interfaces.fsl.maths.BinaryMaths"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass/ref_bold_corrected_trans_corrected_brain_mask.nii.gz -mul /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2/uni_xform_mask_xform.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz
 191014-05:58:24,198 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.combine_masks".
 191014-05:58:25,978 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask".
 191014-05:58:25,982 nipype.workflow INFO:
   [Node] Running "apply_mask" ("nipype.interfaces.fsl.maths.ApplyMask"), a CommandLine Interface with command:
 fslmaths /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize/uni_xform.nii.gz -mas /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/combine_masks/ref_bold_corrected_trans_corrected_brain_mask_maths.nii.gz /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/sdc_wf/pepolar_unwarp_wf/enhance_and_skullstrip_bold_wf/apply_mask/uni_xform_masked.nii.gz
 191014-05:58:26,207 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_04_wf.sdc_wf.pepolar_unwarp_wf.enhance_and_skullstrip_bold_wf.apply_mask".
 191014-05:58:27,753 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.753010:++ 3dvolreg: AFNI version=Debian-16.2.07~dfsg.1-5~nd16.04+1 (Jun 12 2017) [64-bit]
 191014-05:58:27,753 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.753010:++ Authored by: RW Cox
 191014-05:58:27,753 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.753888:** AFNI converts NIFTI_datatype=4 (INT16) in file /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz to FLOAT32
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.753888:     Warnings of this type will be muted for this session.
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.753888:     Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:*+ WARNING:   If you are performing spatial transformations on an oblique dset, 
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:  such as /scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz,
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:  or viewing/combining it with volumes of differing obliquity,
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:  you should consider running: 
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:     3dWarp -deoblique 
 191014-05:58:27,754 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:  on this and  other oblique datasets in the same session.
 191014-05:58:27,755 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316: See 3dWarp -help for details.
 191014-05:58:27,755 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:++ Oblique dataset:/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_04_wf/bold_bold_trans_wf/bold_reference_wf/gen_ref/slice.nii.gz is 24.322760 degrees from plumb.
 191014-05:58:27,755 nipype.interface INFO:
   stderr 2019-10-14T05:58:27.754316:++ Coarse del was 10, replaced with 7
 191014-05:58:53,638 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.qwarp".
 191014-05:58:56,91 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/cphdr_warp".
 191014-05:58:56,94 nipype.workflow INFO:
   [Node] Running "cphdr_warp" ("niworkflows.interfaces.utils.CopyHeader")
 191014-05:58:56,104 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_reapp_run_05_wf.bold_bold_trans_wf.bold_transform" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_reapp_run_05_wf/bold_bold_trans_wf/bold_transform".
 191014-05:58:56,128 nipype.workflow INFO:
   [Node] Running "bold_transform" ("niworkflows.interfaces.itk.MultiApplyTransforms")
 191014-05:58:56,322 nipype.workflow INFO:
   [Node] Finished "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.cphdr_warp".
 191014-05:58:57,957 nipype.workflow INFO:
   [Node] Setting-up "fmriprep_wf.single_subject_12345_wf.func_preproc_task_rest_run_01_wf.sdc_wf.pepolar_unwarp_wf.to_ants" in "/scratch/fmriprep_wf/single_subject_12345_wf/func_preproc_task_rest_run_01_wf/sdc_wf/pepolar_unwarp_wf/to_ants".
 191014-05:58:57,960 nipype.workflow INFO:
   [Node] Running "to_ants" ("nipype.interfaces.utility.wrappers.Function
No results found