yoosuf

# List all containers (only IDs)
docker ps -aq

# Stop all running containers
docker stop $(docker ps -aq)

# Remove all containers
docker rm $(docker ps -aq)

# Remove all images

tabe

How to install sf 0.7-6 on macOS Mojave with MacPorts

Prerequisites:

- installing R, pkg-config, and gdal via MacPorts.
Note that proj (proj5) is automatically installed as a dependency for gdal.

- downloading the source tarball sf_0.7-6.tar.gz in the current directory

Then:

jblachly

1. Make sure configure can find sys/stat.h:

Modify bcl2fastq/src/cmake/macros.cmake

Find the last block:

#
# Macro to find libraries, with support for static-only search
#
macro(bcl2fastq_find_header_or_die variable file)

pierrejoubert73

How to add a collapsible section in markdown

1. Example

Click me

Heading

1. Foo
2. Bar
   • Baz

• Qux

joyrexus

collapsible markdown?

CLICK ME

yes, even hidden code blocks!

print("hello world!")

pkuczynski

MIT License

Copyright (c) 2014 Piotr Kuczynski

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWAR

stephenhardy

-- Remove the history from 
rm -rf .git

-- recreate the repos from the current content only
git init
git add .
git commit -m "Initial commit"

-- push to the github remote repos ensuring you overwrite history
git remote add origin [email protected]:<YOUR ACCOUNT>/<YOUR REPOS>.git

mkweskin

pandoc -f markdown -t mediawiki test.md -o test.wiki

# Thanks to @tillmanj for the updated formatting

nathanhaigh

#!/bin/bash
# Usage: deinterleave_fastq.sh < interleaved.fastq f.fastq r.fastq [compress]
# 
# Deinterleaves a FASTQ file of paired reads into two FASTQ
# files specified on the command line. Optionally GZip compresses the output
# FASTQ files using pigz if the 3rd command line argument is the word "compress"
# 
# Can deinterleave 100 million paired reads (200 million total
# reads; a 43Gbyte file), in memory (/dev/shm), in 4m15s (255s)
#