Created
          January 25, 2021 11:02 
        
      - 
      
 - 
        
Save sritasngh/7f0e6822390161a388ebb904cac25c5e to your computer and use it in GitHub Desktop.  
  
    
      This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
      Learn more about bidirectional Unicode characters
    
  
  
    
  | <?xml version="1.0" encoding="UTF-8"?> | |
| <sbml level="3" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core"> | |
| <model extentUnits="mole" timeUnits="second"> | |
| <listOfUnitDefinitions> | |
| <unitDefinition id="per_second"> | |
| <listOfUnits> | |
| <unit kind="second" exponent="-1" scale="0" multiplier="1"/> | |
| </listOfUnits> | |
| </unitDefinition> | |
| <unitDefinition id="litre_per_mole_second"> | |
| <listOfUnits> | |
| <unit kind="mole" exponent="-1" scale="0" multiplier="1"/> | |
| <unit kind="litre" exponent="1" scale="0" multiplier="1"/> | |
| <unit kind="second" exponent="-1" scale="0" multiplier="1"/> | |
| </listOfUnits> | |
| </unitDefinition> | |
| </listOfUnitDefinitions> | |
| <listOfCompartments> | |
| <compartment id="comp" size="1e-14" spatialDimensions="3" units="litre" constant="true"/> | |
| </listOfCompartments> | |
| <listOfSpecies> | |
| <species compartment="comp" id="E" initialAmount="5e-21" boundaryCondition="false" | |
| hasOnlySubstanceUnits="false" substanceUnits="mole" constant="false"/> | |
| <species compartment="comp" id="S" initialAmount="1e-20" boundaryCondition="false" | |
| hasOnlySubstanceUnits="false" substanceUnits="mole" constant="false"/> | |
| <species compartment="comp" id="P" initialAmount="0" boundaryCondition="false" | |
| hasOnlySubstanceUnits="false" substanceUnits="mole" constant="false"/> | |
| <species compartment="comp" id="ES" initialAmount="0" boundaryCondition="false" | |
| hasOnlySubstanceUnits="false" substanceUnits="mole" constant="false"/> | |
| </listOfSpecies> | |
| <listOfReactions> | |
| <reaction id="veq" reversible="true" fast="false"> | |
| <listOfReactants> | |
| <speciesReference species="E" stoichiometry="1" constant="true"/> | |
| <speciesReference species="S" stoichiometry="1" constant="true"/> | |
| </listOfReactants> | |
| <listOfProducts> | |
| <speciesReference species="ES" stoichiometry="1" constant="true"/> | |
| </listOfProducts> | |
| <kineticLaw> | |
| <math xmlns="http://www.w3.org/1998/Math/MathML"> | |
| <apply> | |
| <times/> | |
| <ci>comp</ci> | |
| <apply> | |
| <minus/> | |
| <apply> | |
| <times/> | |
| <ci>kon</ci> | |
| <ci>E</ci> | |
| <ci>S</ci> | |
| </apply> | |
| <apply> | |
| <times/> | |
| <ci>koff</ci> | |
| <ci>ES</ci> | |
| </apply> | |
| </apply> | |
| </apply> | |
| </math> | |
| <listOfLocalParameters> | |
| <localParameter id="kon" value="1000000" units="litre_per_mole_second"/> | |
| <localParameter id="koff" value="0.2" units="per_second"/> | |
| </listOfLocalParameters> | |
| </kineticLaw> | |
| </reaction> | |
| <reaction id="vcat" reversible="false" fast="false"> | |
| <listOfReactants> | |
| <speciesReference species="ES" stoichiometry="1" constant="true"/> | |
| </listOfReactants> | |
| <listOfProducts> | |
| <speciesReference species="E" stoichiometry="1" constant="true"/> | |
| <speciesReference species="P" stoichiometry="1" constant="true"/> | |
| </listOfProducts> | |
| <kineticLaw> | |
| <math xmlns="http://www.w3.org/1998/Math/MathML"> | |
| <apply> | |
| <times/> | |
| <ci>comp</ci> | |
| <ci>kcat</ci> | |
| <ci>ES</ci> | |
| </apply> | |
| </math> | |
| <listOfLocalParameters> | |
| <localParameter id="kcat" value="0.1" units="per_second"/> | |
| </listOfLocalParameters> | |
| </kineticLaw> | |
| </reaction> | |
| </listOfReactions> | |
| </model> | |
| </sbml> | 
  
    
      This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
      Learn more about bidirectional Unicode characters
    
  
  
    
  | extern crate xml; | |
| use std::fs::File; | |
| use std::io::BufReader; | |
| use xml::reader::EventReader; | |
| fn parse_file(filename: &str) { | |
| let file = File::open(filename).unwrap(); | |
| let file = BufReader::new(file); | |
| let parser = EventReader::new(file);//provides pull based xml parser | |
| for event in parser { | |
| println!("{:?}", event.unwrap()); | |
| } | |
| } | |
| fn main() { | |
| parse_file("enzymekinetics.xml"); | |
| } | 
  
    
      This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
      Learn more about bidirectional Unicode characters
    
  
  
    
  | StartDocument(1.0, UTF-8, None) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}sbml, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [level -> 3, version -> 1]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}model, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [extentUnits -> mole, timeUnits -> second]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnitDefinitions, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unitDefinition, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> per_second]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnits, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unit, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [kind -> second, exponent -> -1, scale -> 0, multiplier -> 1]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unit) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnits) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unitDefinition) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unitDefinition, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> litre_per_mole_second]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnits, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unit, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [kind -> mole, exponent -> -1, scale -> 0, multiplier -> 1]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unit) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unit, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [kind -> litre, exponent -> 1, scale -> 0, multiplier -> 1]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unit) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}unit, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [kind -> second, exponent -> -1, scale -> 0, multiplier -> 1]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unit) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnits) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}unitDefinition) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfUnitDefinitions) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfCompartments, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}compartment, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> comp, size -> 1e-14, spatialDimensions -> 3, units -> litre, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}compartment) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfCompartments) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfSpecies, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}species, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [compartment -> comp, id -> E, initialAmount -> 5e-21, boundaryCondition -> false, hasOnlySubstanceUnits -> false, substanceUnits -> mole, constant -> false]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}species) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}species, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [compartment -> comp, id -> S, initialAmount -> 1e-20, boundaryCondition -> false, hasOnlySubstanceUnits -> false, substanceUnits -> mole, constant -> false]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}species) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}species, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [compartment -> comp, id -> P, initialAmount -> 0, boundaryCondition -> false, hasOnlySubstanceUnits -> false, substanceUnits -> mole, constant -> false]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}species) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}species, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [compartment -> comp, id -> ES, initialAmount -> 0, boundaryCondition -> false, hasOnlySubstanceUnits -> false, substanceUnits -> mole, constant -> false]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}species) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfSpecies) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactions, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}reaction, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> veq, reversible -> true, fast -> false]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactants, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> E, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> S, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactants) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfProducts, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> ES, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfProducts) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}kineticLaw, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}math, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}apply, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}times, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| EndElement({http://www.w3.org/1998/Math/MathML}times) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(comp) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}apply, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}minus, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| EndElement({http://www.w3.org/1998/Math/MathML}minus) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}apply, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}times, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| EndElement({http://www.w3.org/1998/Math/MathML}times) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(kon) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(E) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(S) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}apply) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}apply, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}times, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| EndElement({http://www.w3.org/1998/Math/MathML}times) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(koff) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(ES) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}apply) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}apply) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}apply) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}math) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfLocalParameters, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}localParameter, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> kon, value -> 1000000, units -> litre_per_mole_second]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}localParameter) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}localParameter, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> koff, value -> 0.2, units -> per_second]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}localParameter) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfLocalParameters) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}kineticLaw) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}reaction) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}reaction, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> vcat, reversible -> false, fast -> false]) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactants, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> ES, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactants) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfProducts, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> E, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [species -> P, stoichiometry -> 1, constant -> true]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}speciesReference) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfProducts) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}kineticLaw, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}math, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}apply, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}times, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| EndElement({http://www.w3.org/1998/Math/MathML}times) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(comp) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(kcat) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.w3.org/1998/Math/MathML}ci, {"": "http://www.w3.org/1998/Math/MathML", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Characters(ES) | |
| EndElement({http://www.w3.org/1998/Math/MathML}ci) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}apply) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.w3.org/1998/Math/MathML}math) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}listOfLocalParameters, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}) | |
| Whitespace( | |
| ) | |
| StartElement({http://www.sbml.org/sbml/level3/version1/core}localParameter, {"": "http://www.sbml.org/sbml/level3/version1/core", "xml": "http://www.w3.org/XML/1998/namespace", "xmlns": "http://www.w3.org/2000/xmlns/"}, [id -> kcat, value -> 0.1, units -> per_second]) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}localParameter) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfLocalParameters) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}kineticLaw) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}reaction) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}listOfReactions) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}model) | |
| Whitespace( | |
| ) | |
| EndElement({http://www.sbml.org/sbml/level3/version1/core}sbml) | |
| EndDocument | 
  
    Sign up for free
    to join this conversation on GitHub.
    Already have an account?
    Sign in to comment