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erddap-docker-demo
Raw
!erddap-docker-demo.md

erddap-docker-demo

Simple configuration project showing an example Dockerized ERDDAP deployment with logs and monitoring (prometheus/grafana).

Raw
.env
#these are dummy values! make sure to change these and give this file restrictive permissions in a real deployment!
SMTP_PASSWORD=stmpsecret
GF_SECURITY_ADMIN_PASSWORD=supersecret
Raw
compose.yaml
services:
erddap:
image: erddap/erddap:v2.28.1
restart: unless-stopped
volumes:
- ./erddapData:/erddapData
ports:
- 8080:8080
environment:
ERDDAP_MEMORY: 4g
ERDDAP_enableCors: true
ERDDAP_emailEverythingTo: [email protected]
ERDDAP_emailDailyReportsTo: [email protected]
ERDDAP_emailFromAddress: [email protected]
ERDDAP_emailUserName: smtpUsername
ERDDAP_emailPassword: "${SMTP_PASSWORD}"
ERDDAP_emailSmtpHost: smtp.host.com
ERDDAP_emailSmtpPort: 465
ERDDAP_adminInstitution: Ocean Institute
ERDDAP_adminInstitutionUrl: https://yourdomain.net
ERDDAP_adminIndividualName: "First Last"
ERDDAP_adminPosition: "ERDDAP Administrator"
ERDDAP_adminPhone: "+33 01 23 45 67 89"
ERDDAP_adminAddress: "1625 route de Sainte Anne, Zone Industrielle de la Pointe du Diable"
ERDDAP_adminCity: "Plouzané"
ERDDAP_adminStateOrProvince: "Bretagne"
ERDDAP_adminPostalCode: "29280"
ERDDAP_adminCountry: "France"
ERDDAP_adminEmail: "[email protected]"
mem_limit: 6g
healthcheck:
test: ["CMD", "curl", "-fl", "http://localhost:8080/erddap/index.html"]
interval: 15s
timeout: 5s
retries: 3
logs:
image: alpine
restart: unless-stopped
volumes:
- ./erddapData:/erddapData:ro
mem_limit: 256m
depends_on:
erddap:
condition: service_healthy
command: tail -F /erddapData/logs/log.txt
prometheus:
image: prom/prometheus:latest
restart: unless-stopped
volumes:
- ./prometheus.yml:/etc/prometheus/prometheus.yml:ro
- prometheus_data:/prometheus
command: >
--config.file=/etc/prometheus/prometheus.yml
--storage.tsdb.path=/prometheus
--storage.tsdb.retention.time=30d
--web.console.libraries=/etc/prometheus/console_libraries
--web.console.templates=/etc/prometheus/consoles
--web.enable-lifecycle
grafana:
image: grafana/grafana:latest
restart: unless-stopped
volumes:
- grafana_data:/var/lib/grafana
- ./datasource-prometheus.yml:/etc/grafana/provisioning/datasources/prometheus.yml
- ./dashboard.yml:/etc/grafana/provisioning/dashboards/dashboard.yml
- ./erddap-dashboard.json:/var/lib/grafana/dashboards/erddap-dashboard.json
- ./request-dashboard.json:/var/lib/grafana/dashboards/request-dashboard.json
environment:
GF_SECURITY_ADMIN_USER: admin
GF_SECURITY_ADMIN_PASSWORD: "${GF_SECURITY_ADMIN_PASSWORD}"
GF_USERS_ALLOW_SIGN_UP: false
GF_INSTALL_PLUGINS: grafana-clock-panel,grafana-piechart-panel
ports:
- 3000:3000
depends_on:
- prometheus
volumes:
prometheus_data:
grafana_data:
Raw
dashboard.yml
apiVersion: 1
providers:
- name: 'ERDDAP Dashboards'
orgId: 1
folder: 'ERDDAP'
type: file
disableDeletion: false
editable: true
allowUiUpdates: true
options:
path: /var/lib/grafana/dashboards
Raw
datasets.xml
<?xml version="1.0" encoding="ISO-8859-1"?>
<erddapDatasets>
<dataset type="EDDTableFromErddap" datasetID="cwwcNDBCMet">
<sourceUrl>https://coastwatch.pfeg.noaa.gov/erddap/tabledap/cwwcNDBCMet</sourceUrl>
<reloadEveryNMinutes>120</reloadEveryNMinutes>
</dataset>
</erddapDatasets>
Raw
datasource-prometheus.yml
apiVersion: 1
datasources:
- name: Prometheus
type: prometheus
access: proxy
url: http://prometheus:9090
uid: prometheus
isDefault: true
editable: false
Raw
erddap_dashboard.json
{
"annotations": {
"list": [
{
"builtIn": 1,
"datasource": {
"type": "grafana",
"uid": "-- Grafana --"
},
"enable": true,
"hide": true,
"iconColor": "rgba(0, 211, 255, 1)",
"name": "Annotations & Alerts",
"type": "dashboard"
}
]
},
"editable": true,
"fiscalYearStartMonth": 0,
"graphTooltip": 0,
"id": 2,
"links": [],
"panels": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"description": "Shows the status of ERDDAP service",
"fieldConfig": {
"defaults": {
"color": {
"mode": "thresholds"
},
"mappings": [
{
"options": {
"0": {
"color": "red",
"index": 0,
"text": "Down"
},
"1": {
"color": "green",
"index": 1,
"text": "Up"
}
},
"type": "value"
}
],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "red"
},
{
"color": "green",
"value": 1
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 2,
"w": 2,
"x": 0,
"y": 0
},
"id": 2,
"options": {
"colorMode": "background",
"graphMode": "none",
"justifyMode": "auto",
"orientation": "auto",
"percentChangeColorMode": "standard",
"reduceOptions": {
"calcs": [
"lastNotNull"
],
"fields": "",
"values": false
},
"showPercentChange": false,
"text": {},
"textMode": "auto",
"wideLayout": true
},
"pluginVersion": "11.6.0",
"targets": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"expr": "up{job=\"erddap\"}",
"interval": "",
"legendFormat": "ERDDAP Service",
"refId": "A"
}
],
"title": "Service Status",
"type": "stat"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"description": "Shows the status of ERDDAP's graphics system",
"fieldConfig": {
"defaults": {
"color": {
"mode": "thresholds"
},
"mappings": [
{
"options": {
"0": {
"color": "red",
"index": 0,
"text": "Not Available"
},
"1": {
"color": "green",
"index": 1,
"text": "Available"
}
},
"type": "value"
}
],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "red"
},
{
"color": "green",
"value": 1
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 2,
"w": 2,
"x": 2,
"y": 0
},
"id": 3,
"options": {
"colorMode": "background",
"graphMode": "none",
"justifyMode": "auto",
"orientation": "auto",
"percentChangeColorMode": "standard",
"reduceOptions": {
"calcs": [
"lastNotNull"
],
"fields": "",
"values": false
},
"showPercentChange": false,
"textMode": "auto",
"wideLayout": true
},
"pluginVersion": "11.6.0",
"targets": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"expr": "bufferedImage_info",
"interval": "",
"legendFormat": "Graphics System",
"refId": "A"
}
],
"title": "Graphics State",
"type": "stat"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "thresholds"
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 3,
"w": 4,
"x": 4,
"y": 0
},
"id": 1,
"options": {
"colorMode": "value",
"graphMode": "none",
"justifyMode": "auto",
"orientation": "auto",
"percentChangeColorMode": "standard",
"reduceOptions": {
"calcs": [
"lastNotNull"
],
"fields": "",
"values": false
},
"showPercentChange": false,
"textMode": "name",
"wideLayout": true
},
"pluginVersion": "11.6.0",
"targets": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"expr": "ERDDAP_build_info",
"instant": true,
"interval": "",
"legendFormat": "Version {{version}} ({{deployment_info}})",
"refId": "A"
}
],
"title": "ERDDAP Version",
"type": "stat"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "fixed"
},
"fieldMinMax": false,
"mappings": [
{
"options": {
"0": {
"color": "red",
"index": 0,
"text": "0"
},
"1": {
"color": "green",
"index": 1,
"text": "1"
}
},
"type": "value"
}
],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 12,
"w": 12,
"x": 12,
"y": 0
},
"id": 8,
"options": {
"minVizHeight": 75,
"minVizWidth": 75,
"orientation": "auto",
"reduceOptions": {
"calcs": [
"last"
],
"fields": "",
"values": false
},
"showThresholdLabels": false,
"showThresholdMarkers": true,
"sizing": "auto",
"text": {}
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "builder",
"exemplar": false,
"expr": "feature_flags",
"format": "time_series",
"fullMetaSearch": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "{{feature_flags}}",
"range": true,
"refId": "A",
"useBackend": false
}
],
"title": "Feature Flags",
"transparent": true,
"type": "gauge"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"description": "Number of datasets by type",
"fieldConfig": {
"defaults": {
"color": {
"mode": "palette-classic"
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
}
]
},
"unit": "none"
},
"overrides": []
},
"gridPos": {
"h": 5,
"w": 4,
"x": 0,
"y": 2
},
"id": 4,
"options": {
"displayMode": "gradient",
"legend": {
"calcs": [],
"displayMode": "list",
"placement": "bottom",
"showLegend": false
},
"maxVizHeight": 300,
"minVizHeight": 10,
"minVizWidth": 0,
"namePlacement": "auto",
"orientation": "horizontal",
"reduceOptions": {
"calcs": [
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],
"fields": "",
"values": false
},
"showUnfilled": true,
"sizing": "auto",
"text": {
"percentSize": 1
},
"valueMode": "color"
},
"pluginVersion": "11.6.0",
"targets": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"expr": "dataset_count",
"interval": "",
"legendFormat": "{{category}} Datasets",
"refId": "A"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"expr": "dataset_failed_load_count",
"interval": "",
"legendFormat": "Failed to Load",
"refId": "B"
}
],
"title": "Dataset Statistics",
"type": "bargauge"
},
{
"datasource": {
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "thresholds"
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
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"color": "red",
"value": 80
}
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"gridPos": {
"h": 2,
"w": 5,
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"options": {
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"percentChangeColorMode": "standard",
"reduceOptions": {
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],
"fields": "",
"values": false
},
"showPercentChange": false,
"textMode": "name",
"wideLayout": true
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "builder",
"expr": "jvm_runtime_info",
"fullMetaSearch": false,
"includeNullMetadata": true,
"legendFormat": "{{version}} {{vendor}} {{runtime}}",
"range": true,
"refId": "A",
"useBackend": false
}
],
"title": "JDK Version",
"type": "stat"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"description": "Memory usage statistics",
"fieldConfig": {
"defaults": {
"color": {
"mode": "palette-classic"
},
"custom": {
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"axisCenteredZero": false,
"axisColorMode": "text",
"axisLabel": "",
"axisPlacement": "auto",
"barAlignment": 0,
"barWidthFactor": 0.6,
"drawStyle": "line",
"fillOpacity": 20,
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"insertNulls": false,
"lineInterpolation": "linear",
"lineWidth": 2,
"pointSize": 5,
"scaleDistribution": {
"type": "linear"
},
"showPoints": "never",
"spanNulls": true,
"stacking": {
"group": "A",
"mode": "none"
},
"thresholdsStyle": {
"mode": "area"
}
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
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"color": "green"
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"unit": "bytes"
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},
{
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},
"expr": "process_resident_memory_bytes",
"interval": "",
"legendFormat": "Resident Memory",
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"title": "Memory Usage",
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"lineInterpolation": "linear",
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"pointSize": 5,
"scaleDistribution": {
"type": "linear"
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"showPoints": "never",
"spanNulls": true,
"stacking": {
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"thresholdsStyle": {
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"mappings": [],
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"gridPos": {
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"displayMode": "table",
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"targets": [
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"expr": "rate(process_cpu_seconds_total{job=\"erddap\"}[5m]) * 100",
"interval": "",
"legendFormat": "CPU Usage",
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"title": "CPU Usage",
"type": "timeseries"
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},
"fieldConfig": {
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"displayMode": "list",
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"title": "Helper Threads",
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"x": 0,
"y": 23
},
"id": 9,
"options": {
"legend": {
"calcs": [],
"displayMode": "list",
"placement": "bottom",
"showLegend": true
},
"tooltip": {
"hideZeros": false,
"mode": "single",
"sort": "none"
}
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(shed_requests_total[$__rate_interval])",
"fullMetaSearch": false,
"includeNullMetadata": false,
"legendFormat": "__auto",
"range": true,
"refId": "A",
"useBackend": false
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(dangerous_memory_failures_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "__auto",
"range": true,
"refId": "B",
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},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(dangerous_memory_emails_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "__auto",
"range": true,
"refId": "C",
"useBackend": false
}
],
"title": "Dangerous Memory and Shed Requests",
"type": "timeseries"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "palette-classic"
},
"custom": {
"axisBorderShow": false,
"axisCenteredZero": false,
"axisColorMode": "text",
"axisLabel": "",
"axisPlacement": "auto",
"barAlignment": 0,
"barWidthFactor": 0.6,
"drawStyle": "line",
"fillOpacity": 0,
"gradientMode": "none",
"hideFrom": {
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},
"insertNulls": false,
"lineInterpolation": "linear",
"lineWidth": 1,
"pointSize": 5,
"scaleDistribution": {
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},
"showPoints": "auto",
"spanNulls": false,
"stacking": {
"group": "A",
"mode": "none"
},
"thresholdsStyle": {
"mode": "off"
}
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
},
{
"color": "red",
"value": 80
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 8,
"w": 12,
"x": 12,
"y": 28
},
"id": 10,
"options": {
"legend": {
"calcs": [],
"displayMode": "list",
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"showLegend": true
},
"tooltip": {
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"mode": "single",
"sort": "none"
}
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(gshhs_request_total[$__rate_interval])",
"fullMetaSearch": false,
"includeNullMetadata": true,
"legendFormat": "gshhs_{{status}}",
"range": true,
"refId": "A",
"useBackend": false
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(national_boundaries_request_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "national_{{status}}",
"range": true,
"refId": "B",
"useBackend": false
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(river_boundaries_request_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "river_{{status}}",
"range": true,
"refId": "C",
"useBackend": false
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(state_boundaries_request_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "state_{{status}}",
"range": true,
"refId": "D",
"useBackend": false
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(topo_request_total[$__rate_interval])",
"fullMetaSearch": false,
"hide": false,
"includeNullMetadata": true,
"instant": false,
"legendFormat": "topo_{{cache}}",
"range": true,
"refId": "E",
"useBackend": false
}
],
"title": "Boundary and Topo Request Rates",
"type": "timeseries"
}
],
"preload": false,
"refresh": "5s",
"schemaVersion": 41,
"tags": [
"erddap",
"monitoring"
],
"templating": {
"list": []
},
"time": {
"from": "now-6h",
"to": "now"
},
"timepicker": {},
"timezone": "",
"title": "ERDDAP Dashboard",
"uid": "eeo2a3a3sgt8gd",
"version": 21
}
Raw
prometheus.yml
global:
scrape_interval: 15s
evaluation_interval: 15s
scrape_configs:
- job_name: 'erddap'
scrape_interval: 30s
metrics_path: '/erddap/metrics'
scheme: 'http'
honor_labels: true
static_configs:
- targets: ['erddap:8080']
labels:
instance: 'erddap-primary'
region: 'primary'
Raw
request_dashboard.json
{
"annotations": {
"list": [
{
"builtIn": 1,
"datasource": {
"type": "grafana",
"uid": "-- Grafana --"
},
"enable": true,
"hide": true,
"iconColor": "rgba(0, 211, 255, 1)",
"name": "Annotations & Alerts",
"type": "dashboard"
}
]
},
"editable": true,
"fiscalYearStartMonth": 0,
"graphTooltip": 0,
"id": 7,
"links": [],
"panels": [
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "thresholds"
},
"mappings": [],
"thresholds": {
"mode": "absolute",
"steps": [
{
"color": "green"
},
{
"color": "red",
"value": 80
}
]
}
},
"overrides": []
},
"gridPos": {
"h": 15,
"w": 24,
"x": 0,
"y": 0
},
"id": 3,
"options": {
"colorMode": "value",
"graphMode": "area",
"justifyMode": "auto",
"orientation": "auto",
"percentChangeColorMode": "standard",
"reduceOptions": {
"calcs": [
"lastNotNull"
],
"fields": "",
"values": false
},
"showPercentChange": false,
"textMode": "auto",
"wideLayout": true
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "code",
"expr": "sum by(dataset_id) (http_request_duration_seconds_count)",
"fullMetaSearch": false,
"includeNullMetadata": false,
"legendFormat": "__auto",
"range": true,
"refId": "A",
"useBackend": false
}
],
"title": "Dataset ID Request Count",
"type": "stat"
},
{
"datasource": {
"type": "prometheus",
"uid": "prometheus"
},
"fieldConfig": {
"defaults": {
"color": {
"mode": "palette-classic"
},
"custom": {
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"axisColorMode": "text",
"axisLabel": "",
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"barAlignment": 0,
"barWidthFactor": 0.6,
"drawStyle": "line",
"fillOpacity": 0,
"gradientMode": "none",
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"viz": false
},
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"pointSize": 5,
"scaleDistribution": {
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},
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"spanNulls": false,
"stacking": {
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},
"thresholdsStyle": {
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}
},
"mappings": [],
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{
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}
]
}
},
"overrides": []
},
"gridPos": {
"h": 12,
"w": 24,
"x": 0,
"y": 15
},
"id": 2,
"options": {
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"displayMode": "list",
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},
"tooltip": {
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"mode": "single",
"sort": "none"
}
},
"pluginVersion": "11.6.0",
"targets": [
{
"disableTextWrap": false,
"editorMode": "builder",
"expr": "rate(http_request_duration_seconds_sum[$__rate_interval])",
"fullMetaSearch": false,
"includeNullMetadata": false,
"legendFormat": "{{dataset_id}} {{status_code}}",
"range": true,
"refId": "A",
"useBackend": false
}
],
"title": "Request Duration Seconds (rate of sum)",
"type": "timeseries"
}
],
"preload": false,
"schemaVersion": 41,
"tags": [],
"templating": {
"list": []
},
"time": {
"from": "now-6h",
"to": "now"
},
"timepicker": {},
"timezone": "browser",
"title": "Request Dashboard",
"uid": "eep5l9sbs72f4d",
"version": 4
}
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