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January 30, 2019 21:31
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##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> | |
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> | |
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> | |
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another"> | |
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group"> | |
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="The phred-scaled genotype likelihoods rounded to the closest integer"> | |
##FORMAT=<ID=SAC,Number=.,Type=Integer,Description="Number of reads on the forward and reverse strand supporting each allele (including reference)"> | |
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> | |
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed"> | |
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
##INFO=<ID=AS_BaseQRankSum,Number=A,Type=Float,Description="Allele-specific Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities"> | |
##INFO=<ID=AS_FS,Number=A,Type=Float,Description="Allele-specific phred-scaled p-value using Fisher's exact test to detect strand bias"> | |
##INFO=<ID=AS_InbreedingCoeff,Number=A,Type=Float,Description="Allele-specific inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expecta | |
##INFO=<ID=AS_MQ,Number=A,Type=Float,Description="Allele-specific RMS mapping quality"> | |
##INFO=<ID=AS_MQRankSum,Number=A,Type=Float,Description="Allele-specific Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities"> | |
##INFO=<ID=AS_QD,Number=A,Type=Float,Description="Allele-specific variant Confidence/Quality by Depth"> | |
##INFO=<ID=AS_ReadPosRankSum,Number=A,Type=Float,Description="Allele-specific Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias"> | |
##INFO=<ID=AS_SOR,Number=A,Type=Float,Description="Allele-specific Symmetric Odds Ratio of 2x2 contingency table to detect strand bias"> | |
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities"> | |
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases"> | |
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples"> | |
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity"> | |
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias"> | |
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"> | |
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed"> | |
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed"> | |
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS mapping quality"> | |
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Number of MAPQ == 0 reads"> | |
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities"> | |
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth"> | |
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias"> | |
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias"> |
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