Stefano Mangiola stemangiola
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| get_cell_type_color = function(cell_type_vector){ | |
| cell_type_vector |> | |
| enframe(value = "harmonised_cell_type") |> | |
| left_join( | |
| tribble( | |
| ~harmonised_cell_type, ~palette, | |
stemangiola
/ use_ssh_with_github.sh
Created
November 17, 2022 04:16
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| git remote set-url origin git@github.com:USERNAME/REPOSITORY.git |
stemangiola
/ test_HPCell.R
Last active
June 21, 2024 06:44
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| # PREMISE | |
| # these implementation of HPCL is highly experimental. | |
| # Therefore the interface, function names, arguments names, types of input | |
| # are subject to change and to be extended. | |
| # At this stage, the input is a named list of Seurat objects. | |
| # In another branch (soon to be integrated), we accept SCE, H5 SCE, and anndata | |
| BiocManager::install("MangiolaLaboratory/HPCell@grammar-hpc", upgrade_dependencies=FALSE) | |
| BiocManager::install("crew", upgrade_dependencies=FALSE) | |
| BiocManager::install("crew.cluster", upgrade_dependencies=FALSE) |
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