Turn off some screen options; turn ON others

screen-options.php

<?php

add_filter( 'default_hidden_meta_boxes', 'scl_toggle_meta_boxes', 10, 2 );

function scl_toggle_meta_boxes( $hidden, $screen ) {
    $hide_these = array( 
		'people_typediv', 
		'facility_typediv', 
		'genesis-theme-settings-version', 
		'genesis-theme-settings-feeds',
		'genesis_inpost_scripts_box',
		'commentstatusdiv',
		'slugdiv',
		'authordiv',
		'postcustom',
		'trackbacksdiv',
		'sharing_meta'
	);
	
	if ( $screen->base == 'nav-menus' ) {
		$show_these = array(
			'add-post-type-course',
			'add-post-type-people',
			'add-post-type-publication',
			'add-post-type-facility',
			'add-post-type-research',
			'add-people_type',
			'add-organization',
			'add-subject_area',
			'add-facility_type',
			'add-service',
			'add-student_type',
			'add-publication_type',
			'add-committee',
			'add-groups',
			'hptal-metabox',  			// Post Type Archive Links box
		);
	  $hidden = array_diff( $hidden, $show_these );
  }
	
	return array_merge( $hidden, $hide_these );
}