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.h5 file history file (dumped with h5dump)
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DATASET "x_names" { | |
DATATYPE H5T_STRING { | |
STRSIZE H5T_VARIABLE; | |
STRPAD H5T_STR_NULLTERM; | |
CSET H5T_CSET_UTF8; | |
CTYPE H5T_C_S1; | |
} | |
DATASPACE SIMPLE { ( 71 ) / ( 71 ) } | |
DATA { | |
(0): "init_Cells", "init_Cells_Cycle_G2_rel", | |
(2): "init_Cells_Cycle_S_rel", "init_Space", "k_apo_dsb_g2", | |
(5): "k_apo_dsb_s", "k_apo_ssb", "k_cyc_arr_chk1", "k_cyc_arr_chk2", | |
(9): "k_damage_dox_dsb", "k_damage_gem_ssb", "k_damage_sn38_ssb", | |
(12): "k_death", "k_death_delay", "k_death_reox", "k_dox_apo", | |
(16): "k_dox_kd", "k_lyse", "k_rep_hr", "k_rep_nhej", | |
(20): "k_rep_nhej_sat", "k_rep_s", "k_ssb_to_dsb", | |
(23): "k_ssb_to_dsb_sn38", "kt", "kt_apo", "p_atm_act_dsb", | |
(27): "p_atr_act_atm", "p_atr_act_ssb", "p_chk1_act", | |
(30): "p_chk1_dea_wip1", "p_chk2_act", "p_chk2_dea_wip1", | |
(33): "p_dnapk_act", "p_dnapk_dea_wip1", "p_h2ax_act_atm", | |
(36): "p_h2ax_act_atr", "p_h2ax_act_dnapk", "p_h2ax_dea", | |
(39): "p_mrna_exp_inh_dox", "p_mrna_exp_inh_dox_kd", | |
(41): "p_p21_mrna_turn", "p_p21_turn", "p_p53_act_atm", | |
(44): "p_p53_act_atr", "p_p53_act_chk1", "p_p53_act_chk2", | |
(47): "p_wip1_mrna_turn", "p_wip1_turn", "scale_p21_mRNA_fold", | |
(50): "scale_patm_au", "scale_pchk1_au", "scale_pchk2_au", | |
(53): "scale_pdnapk_au", "scale_pp53_au", "scale_tp21_au", | |
(56): "scale_tp53_au", "scale_wip1_mRNA_fold", "scale_yh2ax_au", | |
(59): "sd_count_abs", "sd_count_casp_abs", "sd_p21_mRNA_fold", | |
(62): "sd_patm_au", "sd_pchk1_au", "sd_pchk2_au", "sd_pdnapk_au", | |
(66): "sd_pp53_au", "sd_tp21_au", "sd_tp53_au", "sd_wip1_mRNA_fold", | |
(70): "sd_yh2ax_au" | |
} | |
} |
.csv
files lack some of the parameters reported in x_names
in the .h5
file.
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Header of a CSV file (one start of an optimizer):
,time,n_fval,n_grad,n_hess,n_res,n_sres,fval,chi2,res,sres,hess,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,x,grad,schi2 ,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,k_damage_dox_dsb,k_damage_gem_ssb,k_damage_sn38_ssb,k_death_reox,k_dox_apo,k_rep_hr,k_rep_nhej,k_rep_nhej_sat,k_rep_s,k_ssb_to_dsb,k_ssb_to_dsb_sn38,kt,p_atm_act_dsb,p_atr_act_atm,p_atr_act_ssb,p_chk1_act,p_chk1_dea_wip1,p_chk2_act,p_chk2_dea_wip1,p_dnapk_act,p_dnapk_dea_wip1,p_h2ax_act_atm,p_h2ax_act_atr,p_h2ax_act_dnapk,p_h2ax_dea,p_mrna_exp_inh_dox,p_p21_mrna_turn,p_p21_turn,p_p53_act_atm,p_p53_act_atr,p_p53_act_chk1,p_p53_act_chk2,p_wip1_mrna_turn,p_wip1_turn,scale_p21_mRNA_fold,scale_patm_au,scale_pchk1_au,scale_pchk2_au,scale_pdnapk_au,scale_pp53_au,scale_tp21_au,scale_tp53_au,scale_wip1_mRNA_fold,scale_yh2ax_au,sd_count_abs,sd_count_casp_abs,sd_p21_mRNA_fold,sd_patm_au,sd_pchk1_au,sd_pchk2_au,sd_pdnapk_au,sd_pp53_au,sd_tp21_au,sd_tp53_au,sd_wip1_mRNA_fold,sd_yh2ax_au,nan,nan