Created
August 12, 2013 15:38
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| # Make the utility script executable (do this once) | |
| chmod +x ~/bin/ngs/gatk/gatk | |
| # Put the GATK directory in your path (add to .bashrc) | |
| export PATH=$HOME/bin/ngs/gatk/:$PATH | |
| # The "old way" to invoke GATK's help: | |
| java -Xmx100m -jar ~/bin/ngs/gatk/GenomeAnalysisTK.jar -h | |
| # The easy way: | |
| gatk -h |
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