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Scatterplot av humane-gener mot totalt antall basepar for de 23 kromosomene. Dataene er hentet fra første tabell i https://en.wikipedia.org/wiki/Chromosome.
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| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <meta name="viewport" content="width=device-width"> | |
| <script src="https://d3js.org/d3.v5.min.js"></script> | |
| </head> | |
| <body> | |
| <script id="jsbin-source-html" type="text/html"><!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <meta name="viewport" content="width=device-width"> | |
| <script src="https://d3js.org/d3.v5.min.js"><\/script> | |
| </head> | |
| <body> | |
| </body> | |
| <script> | |
| var data= [ | |
| {chromosome:1,genes:2000,totalBasePairs:247199719}, | |
| {chromosome:2,genes:1300,totalBasePairs:242751149}, | |
| {chromosome:3,genes:1000,totalBasePairs:199446827}, | |
| {chromosome:4,genes:1000,totalBasePairs:191263063}, | |
| {chromosome:5,genes:900,totalBasePairs:180837866}, | |
| {chromosome:6,genes:1000,totalBasePairs:170896993}, | |
| {chromosome:7,genes:900,totalBasePairs:158821424}, | |
| {chromosome:8,genes:700,totalBasePairs:146274826}, | |
| {chromosome:9,genes:800,totalBasePairs:140442298}, | |
| {chromosome:10,genes:700,totalBasePairs:135374737}, | |
| {chromosome:11,genes:1300,totalBasePairs:134452384}, | |
| {chromosome:12,genes:1100,totalBasePairs:132289534}, | |
| {chromosome:13,genes:300,totalBasePairs:114127980}, | |
| {chromosome:14,genes:800,totalBasePairs:106360585}, | |
| {chromosome:15,genes:600,totalBasePairs:100338915}, | |
| {chromosome:16,genes:800,totalBasePairs:88822254}, | |
| {chromosome:17,genes:1200,totalBasePairs:78654742}, | |
| {chromosome:18,genes:200,totalBasePairs:76117153}, | |
| {chromosome:19,genes:1500,totalBasePairs:63806651}, | |
| {chromosome:20,genes:500, totalBasePairs:62435965}, | |
| {chromosome:21,genes:200,totalBasePairs:46944323}, | |
| {chromosome:22,genes:500,totalBasePairs:49528953}, | |
| {chromosome:"X", genes: 800, totalBasePairs:154913754}, | |
| {chromosome:"Y", genes:50, totalBasePairs:57741652}] | |
| function getChromosome(d){ | |
| return d.chromosome; | |
| } | |
| function getGeneCount(d){ | |
| return d.genes; | |
| } | |
| function getTotalBasePairs(d){ | |
| return d.totalBasePairs / 1000000; | |
| } | |
| var height = 500; | |
| var width = 500; | |
| var padding = 100; | |
| var svg = d3.select("body") | |
| .append("svg") | |
| .attr("height", height) | |
| .attr("width", width) | |
| var xScale = d3.scaleLinear() | |
| .domain([d3.min(data, getTotalBasePairs), d3.max(data,getTotalBasePairs)]) | |
| .nice() | |
| .range([0, width - padding]); | |
| var yScale = d3.scaleLinear() | |
| .domain([d3.min(data, getGeneCount), d3.max(data,getGeneCount)+200]) | |
| .nice() | |
| .range([height-padding, padding]); | |
| var xAxis = d3.axisBottom() | |
| .scale(xScale); | |
| var yAxis = d3.axisLeft() | |
| .scale(yScale) | |
| .tickFormat(function(d){ | |
| return d; | |
| }) | |
| var xAxisG = svg.append("g") | |
| .attr("transform", "translate(" + 50 + "," + (height-padding) + ")") | |
| .classed("axis", true) | |
| .call(xAxis) | |
| xAxisG.append("text") | |
| .attr("x", (width-padding)/2) | |
| .attr("y", padding/2) | |
| .text("Millioner basepar") | |
| .attr("font-family", "sans-serif") | |
| .attr("font-size", "14px") | |
| .attr("fill", "black"); | |
| var yAxisG = svg.append("g") | |
| .attr("transform", "translate(" + 50 + "," + 0 + ")") | |
| .classed("axis",true) | |
| .call(yAxis) | |
| yAxisG.append("text") | |
| .attr("x", 0) | |
| .attr("y", 85) | |
| .text("Gener") | |
| .attr("font-family", "sans-serif") | |
| .attr("font-size", "14px") | |
| .attr("fill", "black"); | |
| svg.selectAll("circle") | |
| .data(data) | |
| .enter() | |
| .append("circle") | |
| .attr("cy", function(d){ | |
| return yScale(getGeneCount(d)); | |
| }) | |
| .attr("cx",function(d){ | |
| return 50 + xScale(getTotalBasePairs(d)) | |
| }) | |
| .attr("r","10px") | |
| .attr("fill", function(d){ | |
| const chromosome = getChromosome(d); | |
| if(chromosome === "Y"){ | |
| return "steelblue"; | |
| }else if(chromosome === "X"){ | |
| return "#ffa6c9"; | |
| } else { | |
| return "grey"; | |
| } | |
| }) | |
| .attr("opacity",1) | |
| .attr("stroke", "black") | |
| .attr("stroke-width","1px") | |
| svg.selectAll(".gene") | |
| .data(data) | |
| .enter() | |
| .append("text") | |
| .classed("gene", true) | |
| .attr("text-anchor", "middle") | |
| .attr("y", function(d){ | |
| return yScale(getGeneCount(d)) + 3; | |
| }) | |
| .attr("x", function(d){ | |
| return 50 + xScale(getTotalBasePairs(d)); | |
| }) | |
| .attr("fill","white") | |
| .attr("font-size", "12px") | |
| .text(function(d){ | |
| return getChromosome(d); | |
| }) | |
| <\/script> | |
| </html> | |
| </script> | |
| </body> | |
| <script> | |
| var data= [ | |
| {chromosome:1,genes:2000,totalBasePairs:247199719}, | |
| {chromosome:2,genes:1300,totalBasePairs:242751149}, | |
| {chromosome:3,genes:1000,totalBasePairs:199446827}, | |
| {chromosome:4,genes:1000,totalBasePairs:191263063}, | |
| {chromosome:5,genes:900,totalBasePairs:180837866}, | |
| {chromosome:6,genes:1000,totalBasePairs:170896993}, | |
| {chromosome:7,genes:900,totalBasePairs:158821424}, | |
| {chromosome:8,genes:700,totalBasePairs:146274826}, | |
| {chromosome:9,genes:800,totalBasePairs:140442298}, | |
| {chromosome:10,genes:700,totalBasePairs:135374737}, | |
| {chromosome:11,genes:1300,totalBasePairs:134452384}, | |
| {chromosome:12,genes:1100,totalBasePairs:132289534}, | |
| {chromosome:13,genes:300,totalBasePairs:114127980}, | |
| {chromosome:14,genes:800,totalBasePairs:106360585}, | |
| {chromosome:15,genes:600,totalBasePairs:100338915}, | |
| {chromosome:16,genes:800,totalBasePairs:88822254}, | |
| {chromosome:17,genes:1200,totalBasePairs:78654742}, | |
| {chromosome:18,genes:200,totalBasePairs:76117153}, | |
| {chromosome:19,genes:1500,totalBasePairs:63806651}, | |
| {chromosome:20,genes:500, totalBasePairs:62435965}, | |
| {chromosome:21,genes:200,totalBasePairs:46944323}, | |
| {chromosome:22,genes:500,totalBasePairs:49528953}, | |
| {chromosome:"X", genes: 800, totalBasePairs:154913754}, | |
| {chromosome:"Y", genes:50, totalBasePairs:57741652}] | |
| function getChromosome(d){ | |
| return d.chromosome; | |
| } | |
| function getGeneCount(d){ | |
| return d.genes; | |
| } | |
| function getTotalBasePairs(d){ | |
| return d.totalBasePairs / 1000000; | |
| } | |
| var height = 500; | |
| var width = 500; | |
| var padding = 100; | |
| var svg = d3.select("body") | |
| .append("svg") | |
| .attr("height", height) | |
| .attr("width", width) | |
| var xScale = d3.scaleLinear() | |
| .domain([d3.min(data, getTotalBasePairs), d3.max(data,getTotalBasePairs)]) | |
| .nice() | |
| .range([0, width - padding]); | |
| var yScale = d3.scaleLinear() | |
| .domain([d3.min(data, getGeneCount), d3.max(data,getGeneCount)+200]) | |
| .nice() | |
| .range([height-padding, padding]); | |
| var xAxis = d3.axisBottom() | |
| .scale(xScale); | |
| var yAxis = d3.axisLeft() | |
| .scale(yScale) | |
| .tickFormat(function(d){ | |
| return d; | |
| }) | |
| var xAxisG = svg.append("g") | |
| .attr("transform", "translate(" + 50 + "," + (height-padding) + ")") | |
| .classed("axis", true) | |
| .call(xAxis) | |
| xAxisG.append("text") | |
| .attr("x", (width-padding)/2) | |
| .attr("y", padding/2) | |
| .text("Millioner basepar") | |
| .attr("font-family", "sans-serif") | |
| .attr("font-size", "14px") | |
| .attr("fill", "black"); | |
| var yAxisG = svg.append("g") | |
| .attr("transform", "translate(" + 50 + "," + 0 + ")") | |
| .classed("axis",true) | |
| .call(yAxis) | |
| yAxisG.append("text") | |
| .attr("x", 0) | |
| .attr("y", 85) | |
| .text("Gener") | |
| .attr("font-family", "sans-serif") | |
| .attr("font-size", "14px") | |
| .attr("fill", "black"); | |
| svg.selectAll("circle") | |
| .data(data) | |
| .enter() | |
| .append("circle") | |
| .attr("cy", function(d){ | |
| return yScale(getGeneCount(d)); | |
| }) | |
| .attr("cx",function(d){ | |
| return 50 + xScale(getTotalBasePairs(d)) | |
| }) | |
| .attr("r","10px") | |
| .attr("fill", function(d){ | |
| const chromosome = getChromosome(d); | |
| if(chromosome === "Y"){ | |
| return "steelblue"; | |
| }else if(chromosome === "X"){ | |
| return "#ffa6c9"; | |
| } else { | |
| return "grey"; | |
| } | |
| }) | |
| .attr("opacity",1) | |
| .attr("stroke", "black") | |
| .attr("stroke-width","1px") | |
| svg.selectAll(".gene") | |
| .data(data) | |
| .enter() | |
| .append("text") | |
| .classed("gene", true) | |
| .attr("text-anchor", "middle") | |
| .attr("y", function(d){ | |
| return yScale(getGeneCount(d)) + 3; | |
| }) | |
| .attr("x", function(d){ | |
| return 50 + xScale(getTotalBasePairs(d)); | |
| }) | |
| .attr("fill","white") | |
| .attr("font-size", "12px") | |
| .text(function(d){ | |
| return getChromosome(d); | |
| }) | |
| </script> | |
| </html> |
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