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June 12, 2017 02:18
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A Python script to filter exported bib file from Mendeley Desktop
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#/usr/bin/env python | |
# a Python script to filter exported bib file from Mendeley Desktop | |
import sys | |
import glob | |
import os | |
# read all .bib files | |
bibfiles = glob.glob('*.bib') | |
# write filtered and merged bibfile to new file | |
fbib = open('mybibfile.bib', 'w') | |
for bibfile in bibfiles: | |
# open bib file | |
with open(bibfile, 'r') as f: | |
bibtexts = f.readlines() | |
# remove unnecessary fields | |
removed_words = ['abstract', 'doi', 'isbn', 'mendeley-groups', 'keywords', | |
'file', 'issn', 'url', 'archivePrefix', 'arxivId', | |
'eprint', 'pmid', 'primaryClass'] | |
filtered = [] | |
for bibtext in bibtexts: | |
flag = True | |
if '@misc' in bibtext: | |
if 'url' in removed_words: | |
removed_words.remove('url') | |
field = bibtext.split('=')[0] | |
for word in removed_words: | |
if word in field: | |
flag = False | |
break | |
if flag: | |
filtered.append(bibtext) | |
# tidy up key-value | |
key_width = 15 | |
tidyup = [] | |
for bibtext in filtered: | |
if '=' in bibtext: | |
properties = bibtext.split('=') | |
key = properties[0] | |
if key.strip() == 'url': | |
key = 'howpublished' | |
key_len = len(key) | |
if key_len <= key_width: | |
space_len = key_width - key_len | |
space = ' ' | |
for i in range(space_len): | |
space += ' ' | |
key += space | |
tidyup.append(' ' + key + '=' + properties[1]) | |
elif '}' in bibtext: | |
tidyup.append(bibtext + '\n') | |
else: | |
tidyup.append(bibtext) | |
for t in tidyup: | |
fbib.write(t) | |
fbib.close() |
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