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Minimal example demonstrating cython compilation failure
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import numpy as np | |
cimport numpy as np | |
cdef packed struct xarr_type: | |
np.float64_t a | |
np.int64_t b | |
np.float64_t c | |
np.int64_t d | |
cdef packed struct yarr_type: | |
np.int32_t a | |
np.int64_t b |
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import numpy as np | |
cimport numpy as np | |
from libc.math cimport fabs | |
from data_structures cimport * | |
DEF _MAX_SIZE = 100 | |
cdef enum: | |
MAX_SIZE = _MAX_SIZE | |
cdef xarr_type[:] xarr | |
cdef xarr_type xarr0[_MAX_SIZE] | |
cdef inline double funcx(np.int64_t a, np.int64_t b, np.float64_t c): | |
return 1.0 / (1.0 + fabs(a - b) / c) |
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import numpy as np | |
cimport numpy as np | |
from data_structures cimport * | |
def init_arrays(x): | |
cdef: | |
int k | |
global xarr | |
xarr = x | |
for k in xrange(MAX_SIZE): | |
xarr0[k] = x[k] | |
def func(np.int64_t ix): | |
cdef: | |
double z | |
xarr_type* tx | |
tx = &(xarr[ix]) | |
z = funcx(tx.b, tx.d, tx.a) | |
return xarr0[ix - 1].a + z |
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from distutils.core import setup | |
from distutils.extension import Extension | |
from Cython.Build import cythonize | |
import numpy | |
numpy_include = numpy.get_include() | |
_include = ['.', numpy_include] | |
_extra = ['-O3', '-w'] | |
if __name__ == '__main__': | |
extensions = [ | |
Extension('factors', ['factors.pyx',], | |
depends=['data_structures.pxd'], | |
include_dirs=_include, | |
extra_compile_args=_extra), | |
Extension('xlib', ['xlib.pyx',], | |
depends=['factors.pxd'], | |
include_dirs=_include, | |
extra_compile_args=_extra) | |
] | |
setup( | |
name = "", | |
ext_modules = cythonize(extensions), | |
) | |
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import numpy as np | |
import factors | |
import xlib | |
def _funcx(a, b, c): | |
return 1.0 / (1.0 + abs(a - b) / c) | |
if __name__ == '__main__': | |
dtype = [ | |
('a', np.float64), | |
('b', np.int64), | |
('c', np.float64), | |
('d', np.int64) | |
] | |
N = 200 | |
data = np.empty(N, dtype=dtype) | |
data['a'] = np.ones(N, dtype=np.float64) | |
data['b'] = np.ones(N, dtype=np.int64) | |
data['c'] = np.linspace(-1, 1, N) | |
data['d'] = np.zeros(N, dtype=np.int64) | |
factors.init_arrays(data) | |
ix = 20 | |
print data[ix - 1]['a'] + _funcx(data[ix]['b'], data[ix]['d'], data[ix]['a']) | |
print xlib.test(ix) |
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import numpy as np | |
cimport numpy as np | |
from factors import * | |
from factors cimport * | |
def test(ix): | |
return func(ix) |
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