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Manual installation of agama in a plain conda enviroment
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# create env and install dependency | |
conda create -n agama python=3.8 numpy gsl glpk eigen cvxopt | |
conda activate agama | |
# download files | |
cd $HOME/src | |
wget https://github.com/GalacticDynamics-Oxford/Agama/archive/master.zip -O agama.zip | |
wget https://github.com/GalacticDynamics-Oxford/unsio/archive/master.zip -O unsio.zip | |
wget https://github.com/cvxopt/cvxopt/archive/master.zip -O cvxopt.zip | |
unzip agama.zip | |
unzip unsio.zip | |
unzip cvxopt.zip | |
mv Agama-master agama | |
mv unsio-master unsio | |
mv cvxopt-master cvxopt | |
# compile unsio | |
cd unsio | |
make | |
cd .. | |
# check the enviroment path | |
echo $CONDA_PREFIX | |
python -c "import numpy as np; print(np.get_include())" | |
python -c "import sysconfig as sc; print(sc.get_paths()['include'])" | |
# create makefile | |
cat <<EOF >agama/Makefile.local | |
# --------------------------------------------------- | |
# Makefile.local | |
FC = gfortran | |
LINK = \$(CXX) | |
# optional: -std=c++11 | |
CXXFLAGS += -fPIC -fopenmp -Wall -O2 -march=native | |
COMPILE_FLAGS += -I\$(CONDA_PREFIX)/include/ | |
LINK_FLAGS += -L\$(CONDA_PREFIX)/lib -lgsl -lgslcblas | |
COMPILE_FLAGS += -DHAVE_PYTHON -I\$(CONDA_PREFIX)/include/python3.8 -I\$(CONDA_PREFIX)/lib/python3.8/site-packages/numpy/core/include | |
LINK_FLAGS += -L\$(CONDA_PREFIX)/lib -lpython3.8 | |
COMPILE_FLAGS += -DHAVE_EIGEN -I\$(CONDA_PREFIX)/include/eigen3 | |
COMPILE_FLAGS += -DHAVE_CVXOPT -I\$(HOME)/src/cvxopt/src/C | |
COMPILE_FLAGS += -DHAVE_UNSIO -I\$(HOME)/src/unsio/unsio | |
LINK_FLAGS += -L\$(HOME)/src/unsio -lunsio -lnemo | |
LINK_FLAGS += -Wl,-rpath,\$(CONDA_PREFIX)/lib | |
EXE_FLAGS += -Wl,-rpath,\$(CONDA_PREFIX)/lib # necessary for compling exe | |
# --------------------------------------------------- | |
EOF | |
# make and test | |
cd agama | |
make # note: do not use parallel make | |
make test |
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Then one may install other useful python packages afterwards