t0mst0ne

"""Tools for searching Pubmed for a list of PMIDs.

The goal here is to search for many PMIDs at once, since searching
sequentially can take a long time. Using the the BioPython Entrez module
is super convenient to this end.

The results results are returned in a simple dictionary format.
"""

t0mst0ne

##TUNING##

Configuration

System: set file descriptors to 32K or 64K

vim /etc/security/limit.conf

t0mst0ne

import json
import os
import time
import requests
from PIL import Image
from StringIO import StringIO
from requests.exceptions import ConnectionError

def go(query, path):
  """Download full size images from Google image search.

t0mst0ne

def plot_correlogram(df,figsize=(20,20)):
    ''' Creat an n x n matrix of scatter plots for every
    combination of numeric columns in a dataframe'''

    cols = list(df.columns[df.dtypes=='float64'])
    n = len(cols)
    fig, ax = plt.subplots(n,n,figsize=figsize)
    for i,y in enumerate(cols):
        for j,x in enumerate(cols):
            if i != n-1:

t0mst0ne

#!/bin/sh
 
# installation of Oracle Java JDK.
sudo apt-get -y update
sudo apt-get -y install python-software-properties
sudo add-apt-repository -y ppa:webupd8team/java
sudo apt-get -y update
sudo apt-get -y install oracle-java7-installer

# Installation of commonly used python scipy tools