tacaswell

import itertools
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.scale as mscale


def factory(break_point, slope_ratio):
    def forward(values):
        out = np.array(values, copy=True)
        out -= break_point

tacaswell

from types import SimpleNamespace
import matplotlib.image as mimage
from matplotlib.patches import Rectangle
from matplotlib.backends.backend_agg import RendererAgg
import matplotlib.transforms as mtransforms
import matplotlib.path as mpath
import matplotlib.colors as mcolors
import numpy as np

tacaswell

Hot-fixing and extending conda environments

Introduction

We deploy root-owned conda environments which are the basis of the data collection and analysis environments. On one hand because these are owned by root they are write-protected and ensure that users can not accidentally break the environment, on the other hand because they are write-protected they can not be upgraded or extended. While we want to run with a stable, standard, well understood software environment, we do need this

tacaswell

#! /usr/bin/env python3


_facilities = {
    "SLAC/ALS": "America/Los_Angeles",
    "APS": "America/Chicago",
    "NSLS-II": "America/New_York",
    "DLS": "Europe/London",
    "MAXIV": "Europe/Paris",
    "SLS":  "Europe/Paris",

tacaswell

Collection of notebooks an files for playing with gpcam data

1. explore_pgcam_data.ipynb -> demo of how to pulll reduced data out of the msgpack databroker
2. extract.py -> code run on xpd against raw data broker to sort out what raw runs we are interested in
3. reprocess.py -> code run to re-process the raw data and produce the reduced outputs

tacaswell

from event_model import compose_run
import datetime
import dateutil.parser
import itertools
from io import StringIO
import subprocess
import numpy as np
import functools

def extract_event(ts, batch):

tacaswell

Python 3.9.0a5+ (heads/master:799d7d61a9, Apr  6 2020, 17:38:49) 
Type 'copyright', 'credits' or 'license' for more information
IPython 8.0.0.dev -- An enhanced Interactive Python. Type '?' for help.

In [1]: 1 /0
Traceback (most recent call last):
  File "/home/tcaswell/.virtualenvs/bleeding/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 3331, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "<ipython-input-1-a37332903225>", line 1, in <module>
    1 /0

tacaswell

This is code to consume processed data from XPD back into document model

tacaswell

import numpy as np
import matplotlib
import matplotlib.lines
from matplotlib.artist import allow_rasterization
import matplotlib.pyplot as plt


class MatplotlibException(Exception):
    ...

tacaswell

*.h5
.ipynb_checkpoints/