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Calculate mean Average Precision (mAP) for a set of ground truth and predicted bounding boxes for a set of images.
"""
author: Timothy C. Arlen
date: 28 Feb 2018
revised by: Sadjad Asghari Esfeden
date: 10 Sep 2018
Calculate Mean Average Precision (mAP) for a set of bounding boxes corresponding to specific
image Ids. Usage:
> python calculate_mean_ap.py
Will display a plot of precision vs recall curves at 10 distinct IoU thresholds as well as output
summary information regarding the average precision and mAP scores.
NOTE: Requires the files `ground_truth_boxes.json` and `predicted_boxes.json` which can be
downloaded fromt this gist.
"""
from __future__ import absolute_import, division, print_function
from copy import deepcopy
import json
import glob
import os
import time
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import seaborn as sns
sns.set_style('white')
sns.set_context('poster')
COLORS = [
'#1f77b4', '#aec7e8', '#ff7f0e', '#ffbb78', '#2ca02c',
'#98df8a', '#d62728', '#ff9896', '#9467bd', '#c5b0d5',
'#8c564b', '#c49c94', '#e377c2', '#f7b6d2', '#7f7f7f',
'#c7c7c7', '#bcbd22', '#dbdb8d', '#17becf', '#9edae5']
def calc_iou_individual(pred_box, gt_box):
"""Calculate IoU of single predicted and ground truth box
Args:
pred_box (list of floats): location of predicted object as
[xmin, ymin, xmax, ymax]
gt_box (list of floats): location of ground truth object as
[xmin, ymin, xmax, ymax]
Returns:
float: value of the IoU for the two boxes.
Raises:
AssertionError: if the box is obviously malformed
"""
x1_t, y1_t, x2_t, y2_t = gt_box
x1_p, y1_p, x2_p, y2_p = pred_box
if (x1_p > x2_p) or (y1_p > y2_p):
raise AssertionError(
"Prediction box is malformed? pred box: {}".format(pred_box))
if (x1_t > x2_t) or (y1_t > y2_t):
raise AssertionError(
"Ground Truth box is malformed? true box: {}".format(gt_box))
if (x2_t < x1_p or x2_p < x1_t or y2_t < y1_p or y2_p < y1_t):
return 0.0
far_x = np.min([x2_t, x2_p])
near_x = np.max([x1_t, x1_p])
far_y = np.min([y2_t, y2_p])
near_y = np.max([y1_t, y1_p])
inter_area = (far_x - near_x + 1) * (far_y - near_y + 1)
true_box_area = (x2_t - x1_t + 1) * (y2_t - y1_t + 1)
pred_box_area = (x2_p - x1_p + 1) * (y2_p - y1_p + 1)
iou = inter_area / (true_box_area + pred_box_area - inter_area)
return iou
def get_single_image_results(gt_boxes, pred_boxes, iou_thr):
"""Calculates number of true_pos, false_pos, false_neg from single batch of boxes.
Args:
gt_boxes (list of list of floats): list of locations of ground truth
objects as [xmin, ymin, xmax, ymax]
pred_boxes (dict): dict of dicts of 'boxes' (formatted like `gt_boxes`)
and 'scores'
iou_thr (float): value of IoU to consider as threshold for a
true prediction.
Returns:
dict: true positives (int), false positives (int), false negatives (int)
"""
all_pred_indices = range(len(pred_boxes))
all_gt_indices = range(len(gt_boxes))
if len(all_pred_indices) == 0:
tp = 0
fp = 0
fn = len(gt_boxes)
return {'true_pos': tp, 'false_pos': fp, 'false_neg': fn}
if len(all_gt_indices) == 0:
tp = 0
fp = len(pred_boxes)
fn = 0
return {'true_pos': tp, 'false_pos': fp, 'false_neg': fn}
gt_idx_thr = []
pred_idx_thr = []
ious = []
for ipb, pred_box in enumerate(pred_boxes):
for igb, gt_box in enumerate(gt_boxes):
iou = calc_iou_individual(pred_box, gt_box)
if iou > iou_thr:
gt_idx_thr.append(igb)
pred_idx_thr.append(ipb)
ious.append(iou)
args_desc = np.argsort(ious)[::-1]
if len(args_desc) == 0:
# No matches
tp = 0
fp = len(pred_boxes)
fn = len(gt_boxes)
else:
gt_match_idx = []
pred_match_idx = []
for idx in args_desc:
gt_idx = gt_idx_thr[idx]
pr_idx = pred_idx_thr[idx]
# If the boxes are unmatched, add them to matches
if (gt_idx not in gt_match_idx) and (pr_idx not in pred_match_idx):
gt_match_idx.append(gt_idx)
pred_match_idx.append(pr_idx)
tp = len(gt_match_idx)
fp = len(pred_boxes) - len(pred_match_idx)
fn = len(gt_boxes) - len(gt_match_idx)
return {'true_pos': tp, 'false_pos': fp, 'false_neg': fn}
def calc_precision_recall(img_results):
"""Calculates precision and recall from the set of images
Args:
img_results (dict): dictionary formatted like:
{
'img_id1': {'true_pos': int, 'false_pos': int, 'false_neg': int},
'img_id2': ...
...
}
Returns:
tuple: of floats of (precision, recall)
"""
true_pos = 0; false_pos = 0; false_neg = 0
for _, res in img_results.items():
true_pos += res['true_pos']
false_pos += res['false_pos']
false_neg += res['false_neg']
try:
precision = true_pos/(true_pos + false_pos)
except ZeroDivisionError:
precision = 0.0
try:
recall = true_pos/(true_pos + false_neg)
except ZeroDivisionError:
recall = 0.0
return (precision, recall)
def get_model_scores_map(pred_boxes):
"""Creates a dictionary of from model_scores to image ids.
Args:
pred_boxes (dict): dict of dicts of 'boxes' and 'scores'
Returns:
dict: keys are model_scores and values are image ids (usually filenames)
"""
model_scores_map = {}
for img_id, val in pred_boxes.items():
if len(val)>0:
for score in val['scores']:
if score not in model_scores_map.keys():
model_scores_map[score] = [img_id]
else:
model_scores_map[score].append(img_id)
return model_scores_map
def get_avg_precision_at_iou(gt_boxes, pred_boxes, iou_thr=0.5):
"""Calculates average precision at given IoU threshold.
Args:
gt_boxes (list of list of floats): list of locations of ground truth
objects as [xmin, ymin, xmax, ymax]
pred_boxes (list of list of floats): list of locations of predicted
objects as [xmin, ymin, xmax, ymax]
iou_thr (float): value of IoU to consider as threshold for a
true prediction.
Returns:
dict: avg precision as well as summary info about the PR curve
Keys:
'avg_prec' (float): average precision for this IoU threshold
'precisions' (list of floats): precision value for the given
model_threshold
'recall' (list of floats): recall value for given
model_threshold
'models_thrs' (list of floats): model threshold value that
precision and recall were computed for.
"""
model_scores_map = get_model_scores_map(pred_boxes)
sorted_model_scores = sorted(model_scores_map.keys())
# Sort the predicted boxes in descending order (lowest scoring boxes first):
for img_id in pred_boxes.keys():
if len(pred_boxes[img_id]) > 0:
arg_sort = np.argsort(pred_boxes[img_id]['scores'])
pred_boxes[img_id]['scores'] = np.array(pred_boxes[img_id]['scores'])[arg_sort].tolist()
pred_boxes[img_id]['boxes'] = np.array(pred_boxes[img_id]['boxes'])[arg_sort].tolist()
pred_boxes_pruned = deepcopy(pred_boxes)
precisions = []
recalls = []
model_thrs = []
img_results = {}
# Loop over model score thresholds and calculate precision, recall
for ithr, model_score_thr in enumerate(sorted_model_scores[:-1]):
# On first iteration, define img_results for the first time:
img_ids = gt_boxes.keys() if ithr == 0 else model_scores_map[model_score_thr]
for img_id in img_ids:
gt_boxes_img = gt_boxes[img_id]
if len(pred_boxes_pruned[img_id]) > 0:
box_scores = pred_boxes_pruned[img_id]['scores']
start_idx = 0
for score in box_scores:
if score < model_score_thr:
# pred_boxes_pruned[img_id]
start_idx += 1
else:
break
# Remove boxes, scores of lower than threshold scores:
pred_boxes_pruned[img_id]['scores'] = pred_boxes_pruned[img_id]['scores'][start_idx:]
pred_boxes_pruned[img_id]['boxes'] = pred_boxes_pruned[img_id]['boxes'][start_idx:]
# Recalculate image results for this image
img_results[img_id] = get_single_image_results(
gt_boxes_img, pred_boxes_pruned[img_id]['boxes'], iou_thr)
else:
img_results[img_id] = {'true_pos': 0, 'false_pos': 0, 'false_neg': len(gt_boxes_img)}
prec, rec = calc_precision_recall(img_results)
precisions.append(prec)
recalls.append(rec)
model_thrs.append(model_score_thr)
precisions = np.array(precisions)
recalls = np.array(recalls)
prec_at_rec = []
for recall_level in np.linspace(0.0, 1.0, 11):
try:
args = np.argwhere(recalls >= recall_level).flatten()
prec = max(precisions[args])
except ValueError:
prec = 0.0
prec_at_rec.append(prec)
avg_prec = np.mean(prec_at_rec)
return {
'avg_prec': avg_prec,
'precisions': precisions,
'recalls': recalls,
'model_thrs': model_thrs}
def plot_pr_curve(
precisions, recalls, category='Person', label=None, color=None, ax=None):
"""Simple plotting helper function"""
if ax is None:
plt.figure(figsize=(10,8))
ax = plt.gca()
if color is None:
color = COLORS[0]
ax.scatter(recalls, precisions, label=label, s=20, color=color)
ax.set_xlabel('recall')
ax.set_ylabel('precision')
ax.set_title('Precision-Recall curve for {}'.format(category))
ax.set_xlim([0.0,1.3])
ax.set_ylim([0.0,1.2])
return ax
if __name__ == "__main__":
with open('ground_truth_boxes.json') as infile:
gt_boxes = json.load(infile)
with open('predicted_boxes.json') as infile:
pred_boxes = json.load(infile)
# Runs it for one IoU threshold
iou_thr = 0.7
start_time = time.time()
data = get_avg_precision_at_iou(gt_boxes, pred_boxes, iou_thr=iou_thr)
end_time = time.time()
print('Single IoU calculation took {:.4f} secs'.format(end_time - start_time))
print('avg precision: {:.4f}'.format(data['avg_prec']))
start_time = time.time()
ax = None
avg_precs = []
iou_thrs = []
for idx, iou_thr in enumerate(np.linspace(0.5, 0.95, 10)):
data = get_avg_precision_at_iou(gt_boxes, pred_boxes, iou_thr=iou_thr)
avg_precs.append(data['avg_prec'])
iou_thrs.append(iou_thr)
precisions = data['precisions']
recalls = data['recalls']
ax = plot_pr_curve(
precisions, recalls, label='{:.2f}'.format(iou_thr), color=COLORS[idx*2], ax=ax)
# prettify for printing:
avg_precs = [float('{:.4f}'.format(ap)) for ap in avg_precs]
iou_thrs = [float('{:.4f}'.format(thr)) for thr in iou_thrs]
print('map: {:.2f}'.format(100*np.mean(avg_precs)))
print('avg precs: ', avg_precs)
print('iou_thrs: ', iou_thrs)
plt.legend(loc='upper right', title='IOU Thr', frameon=True)
for xval in np.linspace(0.0, 1.0, 11):
plt.vlines(xval, 0.0, 1.1, color='gray', alpha=0.3, linestyles='dashed')
end_time = time.time()
print('\nPlotting and calculating mAP takes {:.4f} secs'.format(end_time - start_time))
plt.show()
{"img_00285.png": [[480, 457, 515, 529], [637, 435, 676, 536]], "img_00225.png": [[522, 540, 576, 660], [739, 460, 768, 545]], "img_00224.png": [[527, 539, 575, 660], [747, 459, 769, 546]], "img_00209.png": [[757, 472, 785, 567], [498, 562, 575, 687]], "img_00422.png": [[387, 588, 461, 725], [691, 500, 745, 601]], "img_00327.png": [[542, 433, 580, 508], [668, 454, 702, 537]], "img_00276.png": [[467, 465, 498, 541], [646, 411, 685, 519]], "img_00238.png": [[513, 520, 570, 627], [722, 452, 753, 534]], "img_00136.png": [[568, 700, 648, 853], [801, 722, 867, 936]], "img_00412.png": [[393, 579, 463, 711], [709, 482, 743, 577]], "img_00114.png": [[547, 818, 653, 1029], [827, 925, 912, 1164]], "img_00178.png": [[548, 591, 616, 720], [768, 533, 810, 646]], "img_00164.png": [[770, 569, 834, 718], [564, 613, 624, 754]], "img_00185.png": [[534, 587, 595, 707], [769, 513, 806, 634]], "img_00402.png": [[405, 564, 464, 697], [711, 472, 737, 558]], "img_00428.png": [[369, 525, 456, 704], [676, 503, 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[683, 456, 714, 524]], "img_00175.png": [[768, 538, 814, 670], [557, 593, 618, 722]], "img_00151.png": [[784, 644, 841, 814], [578, 649, 650, 798]], "img_00372.png": [[428, 483, 471, 568], [662, 453, 699, 524]], "img_00358.png": [[490, 463, 522, 524], [644, 449, 675, 528]], "img_00382.png": [[402, 510, 453, 602], [688, 460, 721, 532]], "img_00204.png": [[499, 537, 574, 687], [758, 478, 794, 583]], "img_00315.png": [[527, 420, 563, 506], [676, 454, 715, 538]], "img_00314.png": [[673, 454, 713, 538], [527, 430, 563, 511]], "img_00230.png": [[508, 535, 572, 654], [736, 456, 765, 543]], "img_00280.png": [[466, 457, 504, 534], [643, 415, 675, 521]], "img_00257.png": [[686, 454, 720, 529], [460, 492, 526, 581]], "img_00344.png": [[651, 449, 678, 531], [524, 446, 578, 512]], "img_00239.png": [[514, 524, 572, 628], [723, 452, 750, 534]], "img_00356.png": [[496, 457, 539, 528], [646, 446, 672, 531]], "img_00113.png": [[545, 823, 657, 1031], [827, 921, 920, 1156]], "img_00331.png": [[545, 434, 580, 507], [665, 452, 687, 539]], "img_00245.png": [[501, 512, 559, 609], [709, 455, 747, 531]], "img_00200.png": [[760, 485, 795, 587], [500, 524, 576, 685]], "img_00269.png": [[658, 452, 691, 529], [463, 474, 499, 562]], "img_00192.png": [[525, 586, 586, 703], [765, 500, 802, 611]], "img_00172.png": [[562, 598, 618, 726], [769, 549, 815, 678]], "img_00306.png": [[517, 436, 560, 510], [679, 451, 708, 532]], "img_00430.png": [[668, 503, 709, 607], [368, 531, 454, 700]], "img_00316.png": [[679, 454, 715, 540], [529, 414, 564, 504]], "img_00229.png": [[736, 456, 765, 542], [511, 536, 572, 665]], "img_00326.png": [[670, 453, 702, 538], [541, 435, 578, 506]], "img_00134.png": [[802, 743, 875, 950], [567, 709, 653, 877]], "img_00429.png": [[671, 503, 712, 606], [370, 525, 451, 702]], "img_00243.png": [[706, 451, 749, 535], [506, 515, 565, 623]], "img_00342.png": [[648, 450, 683, 534], [529, 442, 578, 511]], "img_00362.png": [[644, 452, 683, 525], [471, 464, 519, 539]], "img_00266.png": [[663, 461, 692, 532], [457, 475, 503, 563]], "img_00416.png": [[386, 587, 458, 722], [705, 493, 744, 578]], "img_00262.png": [[450, 473, 512, 563], [671, 460, 701, 530]], "img_00369.png": [[659, 450, 700, 525], [438, 473, 479, 562]], "img_00168.png": [[564, 607, 618, 746], [771, 565, 820, 701]], "img_00180.png": [[544, 591, 613, 715], [769, 527, 808, 643]], "img_00205.png": [[501, 540, 576, 687], [756, 480, 790, 578]], "img_00246.png": [[496, 510, 550, 599], [705, 456, 744, 530]], "img_00287.png": [[645, 449, 677, 535], [487, 453, 517, 523]], "img_00434.png": [[658, 509, 693, 613], [368, 538, 457, 701]], "img_00425.png": [[682, 506, 738, 599], [380, 548, 463, 718]], "img_00235.png": [[728, 455, 756, 535], [517, 522, 572, 629]], "img_00328.png": [[670, 453, 698, 539], [545, 433, 581, 506]], "img_00251.png": [[482, 496, 551, 595], [698, 455, 725, 529]], "img_00227.png": [[742, 458, 765, 540], [517, 539, 573, 659]], "img_00406.png": [[708, 478, 744, 560], [403, 579, 463, 713]], "img_00122.png": [[558, 774, 655, 956], [801, 857, 895, 1092]], "img_00202.png": [[502, 533, 574, 684], [759, 482, 790, 584]], "img_00254.png": [[691, 455, 722, 531], [473, 496, 541, 585]], "img_00222.png": [[742, 461, 770, 551], [525, 542, 578, 664]], "img_00166.png": [[566, 610, 625, 752], [772, 568, 825, 713]], "img_00112.png": [[544, 828, 645, 1031], [822, 927, 925, 1150]], "img_00375.png": [[420, 490, 465, 569], [669, 455, 701, 523]], "img_00403.png": [[406, 565, 468, 701], [709, 472, 738, 562]], "img_00195.png": [[513, 554, 587, 700], [760, 493, 799, 606]], "img_00143.png": [[575, 678, 644, 849], [796, 691, 852, 862]], "img_00395.png": [[397, 537, 447, 656], [705, 468, 732, 545]], "img_00146.png": [[578, 670, 648, 829], [796, 671, 849, 850]], "img_00147.png": [[580, 663, 649, 818], [792, 659, 850, 846]], "img_00409.png": [[399, 580, 462, 713], [707, 479, 743, 565]], "img_00237.png": [[723, 451, 753, 534], [516, 521, 571, 629]], "img_00234.png": [[731, 457, 762, 536], [517, 525, 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