tashrifbillah

In addition to the proxy_set_header stuff, I had to adjust my SELinux config:

setsebool -P httpd_read_user_content=on

systemctl restart nginx

I also needed the --ServerApp.allow_remote_access=True flag:

tashrifbillah

#!/usr/bin/env python

import pandas as pd
from glob import glob

new_vars="chrfigs_mother_ddx,chrfigs_mother_ddx_agree,chrfigs_mother_ddx_why,chrfigs_mother_mdx,chrfigs_mother_mdx_agree,\
chrfigs_mother_mdx_why,chrfigs_mother_pdx,chrfigs_mother_pdx_agree,chrfigs_mother_pdx_why,chrfigs_mother_napdx,\
chrfigs_mother_napdx_agree,chrfigs_mother_napdx_why,chrfigs_mother_apdx,chrfigs_mother_apdx_agree,chrfigs_mother_apdx_why,\
chrfigs_father_ddx,chrfigs_father_ddx_agree,chrfigs_father_ddx_why,chrfigs_father_mdx,chrfigs_father_mdx_agree,\
chrfigs_father_mdx_why,chrfigs_father_pdx,chrfigs_father_pdx_agree,chrfigs_father_pdx_why,chrfigs_father_napdx,\

tashrifbillah

This documentation is created by Tashrif Billah for referring AMP-SCZ collaborators about how to make an NDA-format dictionary definition. The latter has to be sent to [email protected] to create the actual data dictionary. Copy the and start editing it according to the following instructions:

ElementName:

      Must be less than 30 characters. It could be identical to REDCap variable name. If a REDCap variable does not exist, make up a proper name.

DataType:

• String
• Date

tashrifbillah

#!/usr/bin/env python

# cd /data/predict1/to_nda/nda-submissions/network_combined

df=pd.read_csv('/data/predict1/home/dm1447/data/ampscz_all_subjects.csv')
df.set_index('subject_id',inplace=True)

dfpre=pd.read_excel('form_status_tracker_PRESCIENT.xlsx')
dfpre.set_index('subject',inplace=True)

tashrifbillah

from glob import glob
import json

dict1={'1':'SPLLT-A','2':'SPLLT-B','3':'SPLLT-C','4':'SPLLT-D','5':'PLLT-A','6':'PLLT-B','':'_______'}

files=glob('Pr*/PHOENIX/PROTECTED/Pr*/raw/???????/surveys/*.UPENN_nda.json')

# odd number of sessions and not provided cnb_pllt_test
for file in files:
    with open(file) as f:

tashrifbillah

#!/usr/bin/env python

import json

reordered='/data/predict1/charts1.json'
raw='/data/predict1/predict-mongodb-backup/charts_20240612.json'

# find out the private charts in raw
# print 0-indexed indices of private charts from raw file

tashrifbillah

General documentation: https://www.gnu.org/software/screen/

Download from: https://ftp.gnu.org/gnu/screen/

Compiling instruction: https://www.gnu.org/software/screen/manual/html_node/Compiling-Screen.html

tashrifbillah

import pandas as pd

df=pd.read_csv('pennebakerctq01_definitions.csv')
dfgiven=pd.read_excel('cnb_ndar_codebook_v5.xlsx')


_aliases=df['Aliases'].unique() 
__aliases=[]
for e in _aliases:
    if pd.isna(e):

tashrifbillah

#!/bin/bash

# convert SSH public key to pem format
ssh-keygen -e -m PKCS8 -f git_rsa.pub > git_rsa.pem

# encrypt
openssl rsautl -encrypt -pubin -inkey git_rsa.pem -in message.txt -out message.enc

# decrypt
openssl rsautl -decrypt -inkey git_rsa -in message.enc

tashrifbillah

import pandas as pd

# cd /data/predict1/to_nda/nda-submissions
df=pd.read_csv('blood_saliva_rack_Pronet.csv')

index=[]
for i,row in df.iterrows():


    rc=row['Rack Code']