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Install R and RStudio on Ubuntu 18.04 with essential libraries for data science. Based on pachamaltese/r_ubuntu_17_10.sh (for Ubuntu 17.10).
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# Install R | |
sudo apt update | |
sudo apt install gdebi libxml2-dev libssl-dev libcurl4-openssl-dev libopenblas-dev r-base r-base-dev | |
# Install RStudio | |
cd ~/Downloads | |
wget https://download1.rstudio.org/rstudio-xenial-1.1.447-amd64.deb | |
sudo gdebi rstudio-xenial-1.1.447-amd64.deb | |
printf '\nexport QT_STYLE_OVERRIDE=gtk\n' | sudo tee -a ~/.profile | |
# install common packages | |
R --vanilla << EOF | |
install.packages(c("tidyverse","data.table","dtplyr","devtools","roxygen2","bit64"), repos = "https://cran.rstudio.com/") | |
q() | |
EOF | |
# Export to HTML/Excel | |
R --vanilla << EOF | |
install.packages(c("htmlTable","openxlsx"), repos = "https://cran.rstudio.com/") | |
q() | |
EOF | |
# Blog tools | |
R --vanilla << EOF | |
install.packages(c("knitr","rmarkdown"), repos='http://cran.us.r-project.org') | |
q() | |
EOF | |
sudo apt install python-pip | |
sudo apt install python3-pip | |
sudo -H pip install markdown rpy2==2.7.1 pelican==3.7.1 | |
sudo -H pip3 install markdown rpy2==2.9.3 pelican==3.7.1 | |
# PDF extraction tools | |
sudo apt install libpoppler-cpp-dev default-jre default-jdk r-cran-rjava | |
sudo R CMD javareconf | |
R --vanilla << EOF | |
library(devtools) | |
install.packages("pdftools", repos = "https://cran.rstudio.com/") | |
install_github("ropensci/tabulizer") | |
q() | |
EOF | |
# TTF/OTF fonts usage | |
sudo apt install libfreetype6-dev | |
R --vanilla << EOF | |
install.packages("showtext", repos = "https://cran.rstudio.com/") | |
q() | |
EOF | |
# Cairo for graphic devices | |
sudo apt install libgtk2.0-dev libxt-dev libcairo2-dev | |
R --vanilla << EOF | |
install.packages("Cairo", repos = "https://cran.rstudio.com/") | |
q() | |
EOF |
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