gcc compile

Trial>> run('/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/MEX_compile.m')
Verbose mode is on.
... Looking for compiler 'g++' ...
... Executing command 'which g++' ...Yes ('/usr/bin/g++').
... Executing command 'g++ -print-file-name=libstdc++.so' ...Yes ('/usr/lib/gcc/x86_64-linux-gnu/5/libstdc++.so').
Found installed compiler 'g++'.
Options file details
-------------------------------------------------------------------
	Compiler location: /usr/bin/gcc-4.9
	Options file: /home/tyler/.matlab/R2017a/mex_C++_glnxa64.xml
	CMDLINE2 : /usr/bin/gcc-4.9 -pthread -Wl,--no-undefined  -shared -O -Wl,--version-script,"/opt/MATLAB/R2017a/extern/lib/glnxa64/c_exportsmexfileversion.map" /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.o /tmp/mex_18749399650554_24205/Spiketrain.o /tmp/mex_18749399650554_24205/DataReader.o /tmp/mex_18749399650554_24205/Spiketrains.o /tmp/mex_18749399650554_24205/Pair.o /tmp/mex_18749399650554_24205/ISIProfile.o /tmp/mex_18749399650554_24205/SPIKEProfile.o /tmp/mex_18749399650554_24205/cpp_mexapi_version.o   -Wl,-rpath-link,/opt/MATLAB/R2017a/bin/glnxa64 -L"/opt/MATLAB/R2017a/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ -o mexAdaptiveISIDistance.mexa64
	CXX : /usr/bin/gcc-4.9
	DEFINES : -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE 
	MATLABMEX : -DMATLAB_MEX_FILE 
	CFLAGS : -fexceptions -fPIC -fno-omit-frame-pointer -pthread
	CXXFLAGS : -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11
	INCLUDE : -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include"
	CXXOPTIMFLAGS : -O -DNDEBUG
	CXXDEBUGFLAGS : -g
	LDXX : /usr/bin/gcc-4.9
	LDFLAGS : -pthread -Wl,--no-undefined 
	LDTYPE : -shared
	LINKEXPORT : -Wl,--version-script,"/opt/MATLAB/R2017a/extern/lib/glnxa64/mexFunction.map"
	LINKEXPORTVER : -Wl,--version-script,"/opt/MATLAB/R2017a/extern/lib/glnxa64/c_exportsmexfileversion.map"
	LINKLIBS : -Wl,-rpath-link,/opt/MATLAB/R2017a/bin/glnxa64 -L"/opt/MATLAB/R2017a/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++
	LDOPTIMFLAGS : -O
	LDDEBUGFLAGS : -g
	MWCPPLIB : "/opt/MATLAB/R2017a/sys/os/glnxa64/libstdc++.so.6"
	OBJEXT : .o
	LDEXT : .mexa64
	SETENV : CC="gcc"
                CXX="/usr/bin/gcc-4.9"
                CFLAGS="-fexceptions -fPIC -fno-omit-frame-pointer -pthread -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE "
                CXXFLAGS="-fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE "
                COPTIMFLAGS="-O -DNDEBUG"
                CXXOPTIMFLAGS="-O -DNDEBUG"
                CDEBUGFLAGS="-g"
                CXXDEBUGFLAGS="-g"
                LD="gcc"
                LDXX="/usr/bin/gcc-4.9"
                LDFLAGS="-pthread -Wl,--no-undefined  -shared -Wl,-rpath-link,/opt/MATLAB/R2017a/bin/glnxa64 -L"/opt/MATLAB/R2017a/bin/glnxa64" -lmx -lmex -lmat -lm -lstdc++ -Wl,--version-script,"/opt/MATLAB/R2017a/extern/lib/glnxa64/mexFunction.map""
                LDDEBUGFLAGS="-g"
	GCC : /usr/bin/gcc-4.9
	CPPLIB_DIR : /usr/lib/gcc/x86_64-linux-gnu/5/libstdc++.so
	MATLABROOT : /opt/MATLAB/R2017a
	ARCH : glnxa64
	SRC : /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Spiketrain.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/DataReader.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Spiketrains.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Pair.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/ISIProfile.cpp;/home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/SPIKEProfile.cpp;/opt/MATLAB/R2017a/extern/version/cpp_mexapi_version.cpp
	OBJ : /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.o;/tmp/mex_18749399650554_24205/Spiketrain.o;/tmp/mex_18749399650554_24205/DataReader.o;/tmp/mex_18749399650554_24205/Spiketrains.o;/tmp/mex_18749399650554_24205/Pair.o;/tmp/mex_18749399650554_24205/ISIProfile.o;/tmp/mex_18749399650554_24205/SPIKEProfile.o;/tmp/mex_18749399650554_24205/cpp_mexapi_version.o
	OBJS : /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.o /tmp/mex_18749399650554_24205/Spiketrain.o /tmp/mex_18749399650554_24205/DataReader.o /tmp/mex_18749399650554_24205/Spiketrains.o /tmp/mex_18749399650554_24205/Pair.o /tmp/mex_18749399650554_24205/ISIProfile.o /tmp/mex_18749399650554_24205/SPIKEProfile.o /tmp/mex_18749399650554_24205/cpp_mexapi_version.o 
	SRCROOT : /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance
	DEF : /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.def
	EXP : mexAdaptiveISIDistance.exp
	LIB : mexAdaptiveISIDistance.lib
	EXE : mexAdaptiveISIDistance.mexa64
	ILK : mexAdaptiveISIDistance.ilk
	MANIFEST : mexAdaptiveISIDistance.mexa64.manifest
	TEMPNAME : mexAdaptiveISIDistance
	EXEDIR : 
	EXENAME : mexAdaptiveISIDistance
	OPTIM : -O -DNDEBUG
	LINKOPTIM : -O
	CMDLINE1_0 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp -o /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.o
	CMDLINE1_1 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Spiketrain.cpp -o /tmp/mex_18749399650554_24205/Spiketrain.o
	CMDLINE1_2 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/DataReader.cpp -o /tmp/mex_18749399650554_24205/DataReader.o
	CMDLINE1_3 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Spiketrains.cpp -o /tmp/mex_18749399650554_24205/Spiketrains.o
	CMDLINE1_4 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/Pair.cpp -o /tmp/mex_18749399650554_24205/Pair.o
	CMDLINE1_5 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/ISIProfile.cpp -o /tmp/mex_18749399650554_24205/ISIProfile.o
	CMDLINE1_6 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/SPIKEProfile.cpp -o /tmp/mex_18749399650554_24205/SPIKEProfile.o
	CMDLINE1_7 : /usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /opt/MATLAB/R2017a/extern/version/cpp_mexapi_version.cpp -o /tmp/mex_18749399650554_24205/cpp_mexapi_version.o
-------------------------------------------------------------------
Building with 'g++'.
/usr/bin/gcc-4.9 -c -DTARGET_API_VERSION=700  -Dchar16_t=uint16_T  -DUSE_MEX_CMD   -D_GNU_SOURCE -DMATLAB_MEX_FILE  -I"/opt/MATLAB/R2017a/extern/include" -I"/opt/MATLAB/R2017a/simulink/include" -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++11 -O -DNDEBUG /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp -o /tmp/mex_18749399650554_24205/mexAdaptiveISIDistance.o
Error using mex
In file included from /usr/include/c++/4.9/bits/stl_algobase.h:61:0,
                 from /usr/include/c++/4.9/vector:60,
                 from /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp:12:
/usr/include/c++/4.9/bits/cpp_type_traits.h:206:12: error: redefinition of ‘struct std::__is_integer<short unsigned int>’
     struct __is_integer<unsigned short>
            ^
/usr/include/c++/4.9/bits/cpp_type_traits.h:184:12: error: previous definition of ‘struct std::__is_integer<short unsigned int>’
     struct __is_integer<char16_t>
            ^
In file included from /usr/include/c++/4.9/bits/move.h:57:0,
                 from /usr/include/c++/4.9/bits/stl_pair.h:59,
                 from /usr/include/c++/4.9/bits/stl_algobase.h:64,
                 from /usr/include/c++/4.9/vector:60,
                 from /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp:12:
/usr/include/c++/4.9/type_traits:218:12: error: redefinition of ‘struct std::__is_integral_helper<short unsigned int>’
     struct __is_integral_helper<unsigned short>
            ^
/usr/include/c++/4.9/type_traits:206:12: error: previous definition of ‘struct std::__is_integral_helper<short unsigned int>’
     struct __is_integral_helper<char16_t>
            ^
/usr/include/c++/4.9/type_traits:1711:12: error: redefinition of ‘struct std::__make_signed<short unsigned int>’
     struct __make_signed<char16_t> : __make_signed<uint_least16_t>
            ^
/usr/include/c++/4.9/type_traits:1688:12: error: previous definition of ‘struct std::__make_signed<short unsigned int>’
     struct __make_signed<unsigned short>
            ^
In file included from /usr/include/c++/4.9/bits/stl_bvector.h:1181:0,
                 from /usr/include/c++/4.9/vector:65,
                 from /home/tyler/Dropbox/Shared/PDtrustOT_Tyler/MATLAB/distance/cSPIKE_package_v1.1/cSPIKEmex/mexAdaptiveISIDistance.cpp:12:
/usr/include/c++/4.9/bits/functional_hash.h:113:3: error: redefinition of ‘struct std::hash<short unsigned int>’
   _Cxx_hashtable_define_trivial_hash(unsigned short)
   ^
/usr/include/c++/4.9/bits/functional_hash.h:95:3: error: previous definition of ‘struct std::hash<short unsigned int>’
   _Cxx_hashtable_define_trivial_hash(char16_t)
   ^


Error in MEX_compile (line 5)
mex -v GCC='/usr/bin/gcc-4.9' -Dchar16_t=uint16_T mexAdaptiveISIDistance.cpp Spiketrain.cpp DataReader.cpp Spiketrains.cpp Pair.cpp ISIProfile.cpp
SPIKEProfile.cpp


Error in run (line 86)
evalin('caller', [script ';']);
 
Trial>>