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tbl3rd/vcf-variant-maps.edn

Created August 3, 2018 04:12
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vcf-variant-maps.edn
({:ID "rs3131972",
"200557070005_R06C01" {:GT "1/1",
:IGC "0.853",
:GTZ "1/1",
:R "0.861",
:NORMY "0.828",
:BAF "1",
:LRR "-0.053",
:GTA "1/1",
:THETA "0.975",
:Y "2764",
:NORMX "0.033",
:X "278"},
:POS "752721",
:ALT "G",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.062",
:devY_AA "0.019",
:zthresh_X "0.149531775683",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.016",
:meanY_AA "0.04",
:AF "1.00",
:N_AA "48",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "AACGTTCACTTTCTGTCTGTGTTCACGTCACCAAGAGAATAGAAAGGAAA",
:meanTHETA_BB "0.965",
:meanX_AA "0.875",
:zthresh_Y "0.163959980255",
:devTHETA_AA "0.014",
:ILLUMINA_CHR "1",
:meanY_AB "0.549",
:meanY_BB "0.851",
:PROBE_B ".",
:devX_AA "0.097",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "2",
:SOURCE "dbSNP",
:devR_AB "0.111",
:devY_BB "0.096",
:ALLELE_B "G",
:N_AB "95",
:devR_BB "0.1",
:ILLUMINA_POS "752721",
:meanR_AA "0.915",
:devTHETA_AB "0.065",
:GC_SCORE "0.826",
:devY_AB "0.075",
:meanTHETA_AB "0.522",
:meanTHETA_AA "0.029",
:devX_AB "0.073",
:refSNP "rs3131972",
:meanR_BB "0.897",
:devR_AA "0.1",
:devTHETA_BB "0.012",
:meanX_BB "0.046",
:N_BB "120",
:meanX_AB "0.513"}}
{:ID "rs11240777",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.792",
:GTZ "0/0",
:R "1.456",
:NORMY "1.339",
:BAF "0.989",
:LRR "0.038",
:GTA "0/0",
:THETA "0.945",
:Y "4466",
:NORMX "0.117",
:X "836"},
:POS "798959",
:ALT "A",
:REF "G",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.879",
:devY_AA "0.027",
:zthresh_X "0.227451082446",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.021",
:meanY_AA "0.052",
:AF "0.00",
:N_AA "63",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "GTTGGGTAGTGGAAGGTTTCAGAGTTGATAGCATTTGGATTGGGCTTTAA",
:meanTHETA_BB "0.956",
:meanX_AA "1.636",
:zthresh_Y "0.190418403074",
:devTHETA_AA "0.011",
:ILLUMINA_CHR "1",
:meanY_AB "0.859",
:meanY_BB "1.317",
:PROBE_B ".",
:devX_AA "0.138",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.144",
:devY_BB "0.096",
:ALLELE_B "G*",
:N_AB "105",
:devR_BB "0.1",
:ILLUMINA_POS "798959",
:meanR_AA "1.688",
:devTHETA_AB "0.031",
:GC_SCORE "0.785",
:devY_AB "0.079",
:meanTHETA_AB "0.446",
:meanTHETA_AA "0.02",
:devX_AB "0.089",
:refSNP "rs11240777",
:meanR_BB "1.408",
:devR_AA "0.14",
:devTHETA_BB "0.01",
:meanX_BB "0.091",
:N_BB "91",
:meanX_AB "1.02"}}
{:ID "rs4970383",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.662",
:GTZ "0/0",
:R "0.343",
:NORMY "0.278",
:BAF "0.921",
:LRR "-0.285",
:GTA "0/0",
:THETA "0.852",
:Y "932",
:NORMX "0.066",
:X "422"},
:POS "838555",
:ALT "A",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "0.424",
:devY_AA "0.021",
:zthresh_X "0.173421449432",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.023",
:meanY_AA "0.041",
:AF "0.00",
:N_AA "31",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "CATCTCCTCTTCTTATACATTGTATCAGGGCCCGCCCCATGACCCCATTT",
:meanTHETA_BB "0.909",
:meanX_AA "0.305",
:zthresh_Y "0.170245412907",
:devTHETA_AA "0.039",
:ILLUMINA_CHR "1",
:meanY_AB "0.228",
:meanY_BB "0.365",
:PROBE_B ".",
:devX_AA "0.09",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.1",
:devY_BB "0.09",
:ALLELE_B "C*",
:N_AB "117",
:devR_BB "0.1",
:ILLUMINA_POS "838555",
:meanR_AA "0.346",
:devTHETA_AB "0.059",
:GC_SCORE "0.728",
:devY_AB "0.057",
:meanTHETA_AB "0.549",
:meanTHETA_AA "0.085",
:devX_AB "0.05",
:refSNP "rs4970383",
:meanR_BB "0.417",
:devR_AA "0.1",
:devTHETA_BB "0.038",
:meanX_BB "0.052",
:N_BB "116",
:meanX_AB "0.196"}}
{:ID "rs4475691",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.91",
:GTZ "0/0",
:R "1.221",
:NORMY "1.145",
:BAF "0.989",
:LRR "0.156",
:GTA "0/0",
:THETA "0.958",
:Y "3820",
:NORMX "0.076",
:X "570"},
:POS "846808",
:ALT "T",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.405",
:devY_AA "0.029",
:zthresh_X "0.159383049854",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.017",
:meanY_AA "0.051",
:AF "0.00",
:N_AA "15",
:BEADSET_ID "927",
:ALLELE_A "T",
:PROBE_A "CGTACAAATCCACTGACTTGCCATTGCCAGCTGCGTGTGAGCACAAAGGC",
:meanTHETA_BB "0.968",
:meanX_AA "1.265",
:zthresh_Y "0.16780841709",
:devTHETA_AA "0.015",
:ILLUMINA_CHR "1",
:meanY_AB "0.688",
:meanY_BB "1.037",
:PROBE_B ".",
:devX_AA "0.146",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.124",
:devY_BB "0.097",
:ALLELE_B "C*",
:N_AB "91",
:devR_BB "0.1",
:ILLUMINA_POS "846808",
:meanR_AA "1.316",
:devTHETA_AB "0.039",
:GC_SCORE "0.873",
:devY_AB "0.085",
:meanTHETA_AB "0.487",
:meanTHETA_AA "0.026",
:devX_AB "0.087",
:refSNP "rs4475691",
:meanR_BB "1.089",
:devR_AA "0.149",
:devTHETA_BB "0.01",
:meanX_BB "0.052",
:N_BB "156",
:meanX_AB "0.716"}}
{:ID "rs13302982",
"200557070005_R06C01" {:GT "1/1",
:IGC "0.847",
:GTZ "1/1",
:R "1.265",
:NORMY "1.165",
:BAF "0.991",
:LRR "0.026",
:GTA "1/1",
:THETA "0.946",
:Y "3885",
:NORMX "0.1",
:X "716"},
:POS "861808",
:ALT "G",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.572",
:devY_AA "0.022",
:zthresh_X "0.208990850235",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.022",
:meanY_AA "0.039",
:AF "1.00",
:N_AA "73",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "AGCACCCAGAGACACAAGTCACTCACACCCAAGCCTGTAGCTCCCCAAAA",
:meanTHETA_BB "0.955",
:meanX_AA "1.353",
:zthresh_Y "0.184197017159",
:devTHETA_AA "0.01",
:ILLUMINA_CHR "1",
:meanY_AB "0.747",
:meanY_BB "1.154",
:PROBE_B ".",
:devX_AA "0.1",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "2",
:SOURCE "dbSNP",
:devR_AB "0.121",
:devY_BB "0.096",
:ALLELE_B "G",
:N_AB "66",
:devR_BB "0.1",
:ILLUMINA_POS "861808",
:meanR_AA "1.392",
:devTHETA_AB "0.022",
:GC_SCORE "0.821",
:devY_AB "0.055",
:meanTHETA_AB "0.468",
:meanTHETA_AA "0.018",
:devX_AB "0.059",
:refSNP "rs34798198",
:meanR_BB "1.236",
:devR_AA "0.1",
:devTHETA_BB "0.012",
:meanX_BB "0.082",
:N_BB "124",
:meanX_AB "0.826"}}
{:ID "rs28391282",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.77",
:GTZ "0/0",
:R "1.248",
:NORMY "1.14",
:BAF "0.995",
:LRR "0.097",
:GTA "0/0",
:THETA "0.94",
:Y "3802",
:NORMX "0.108",
:X "764"},
:POS "904165",
:ALT "A",
:REF "G",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.314",
:devY_AA "0.029",
:zthresh_X "0.220071589972",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.021",
:meanY_AA "0.137",
:AF "0.00",
:N_AA "7",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "TCTTGGAGCAGGTAATGTCTGAGCAAAGCTGCAAAGCGGGTAAGGAGGGG",
:meanTHETA_BB "0.944",
:meanX_AA "1.018",
:zthresh_Y "0.189233398723",
:devTHETA_AA "0.018",
:ILLUMINA_CHR "1",
:meanY_AB "0.688",
:meanY_BB "1.071",
:PROBE_B ".",
:devX_AA "0.092",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.107",
:devY_BB "0.094",
:ALLELE_B "G*",
:N_AB "60",
:devR_BB "0.1",
:ILLUMINA_POS "904165",
:meanR_AA "1.155",
:devTHETA_AB "0.025",
:GC_SCORE "0.772",
:devY_AB "0.058",
:meanTHETA_AB "0.53",
:meanTHETA_AA "0.085",
:devX_AB "0.054",
:refSNP "rs28391282",
:meanR_BB "1.165",
:devR_AA "0.1",
:devTHETA_BB "0.012",
:meanX_BB "0.094",
:N_BB "195",
:meanX_AB "0.627"}}
{:ID "rs2341354",
"200557070005_R06C01" {:GT "0/1",
:IGC "0.753",
:GTZ "0/1",
:R "2.641",
:NORMY "1.13",
:BAF "0.537",
:LRR "0.088",
:GTA "0/1",
:THETA "0.409",
:Y "3807",
:NORMX "1.511",
:X "9267"},
:POS "918573",
:ALT "G",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "2.55",
:devY_AA "0.039",
:zthresh_X "0.173787508925",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.022",
:meanY_AA "0.118",
:AF "0.500",
:N_AA "57",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "ACACGGTGCGGCTGTGAATATCTGGGAACATTCCTTTCGGCGAACCTCTC",
:meanTHETA_BB "0.979",
:meanX_AA "2.29",
:zthresh_Y "0.171358874593",
:devTHETA_AA "0.011",
:ILLUMINA_CHR "1",
:meanY_AB "0.997",
:meanY_BB "1.619",
:PROBE_B ".",
:devX_AA "0.194",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.188",
:devY_BB "0.103",
:ALLELE_B "G",
:N_AB "101",
:devR_BB "0.104",
:ILLUMINA_POS "918573",
:meanR_AA "2.408",
:devTHETA_AB "0.018",
:GC_SCORE "0.762",
:devY_AB "0.087",
:meanTHETA_AB "0.363",
:meanTHETA_AA "0.033",
:devX_AB "0.128",
:refSNP "rs2341354",
:meanR_BB "1.673",
:devR_AA "0.201",
:devTHETA_BB "0.009",
:meanX_BB "0.054",
:N_BB "104",
:meanX_AB "1.553"}}
{:ID "rs9777703",
"200557070005_R06C01" {:GT "1/1",
:IGC "0.907",
:GTZ "1/1",
:R "1.407",
:NORMY "0.076",
:BAF "0.004",
:LRR "0.105",
:GTA "1/1",
:THETA "0.036",
:Y "294",
:NORMX "1.331",
:X "8074"},
:POS "928836",
:ALT "T",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.592",
:devY_AA "0.016",
:zthresh_X "0.179105359188",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.036",
:meanY_AA "0.061",
:AF "1.00",
:N_AA "223",
:BEADSET_ID "927",
:ALLELE_A "T",
:PROBE_A "ACAAACCAGCTTCCTGGGGACGTGCTGATGGAGCTTCCTCTTCCTAAAGC",
:meanTHETA_BB "0.983",
:meanX_AA "1.245",
:zthresh_Y "0.168257251187",
:devTHETA_AA "0.008",
:ILLUMINA_CHR "1",
:meanY_AB "0.894",
:meanY_BB "1.289",
:PROBE_B ".",
:devX_AA "0.116",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "2",
:SOURCE "dbSNP",
:devR_AB "0.173",
:devY_BB "0.117",
:ALLELE_B "C*",
:N_AB "34",
:devR_BB "0.115",
:ILLUMINA_POS "928836",
:meanR_AA "1.306",
:devTHETA_AB "0.026",
:GC_SCORE "0.87",
:devY_AB "0.075",
:meanTHETA_AB "0.578",
:meanTHETA_AA "0.031",
:devX_AB "0.062",
:refSNP "rs9777703",
:meanR_BB "1.323",
:devR_AA "0.121",
:devTHETA_BB "0.018",
:meanX_BB "0.033",
:N_BB "7",
:meanX_AB "0.698"}}
{:ID "rs1891910",
"200557070005_R06C01" {:GT "1/0",
:IGC "0.837",
:GTZ "1/0",
:R "1.768",
:NORMY "0.851",
:BAF "0.504",
:LRR "0.093",
:GTA "1/0",
:THETA "0.476",
:Y "2863",
:NORMX "0.917",
:X "5640"},
:POS "932457",
:ALT "A",
:REF "G",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.66",
:devY_AA "0.041",
:zthresh_X "0.159959950453",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.017",
:meanY_AA "0.054",
:AF "0.500",
:N_AA "6",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "CTGAGACCTCGCTAGTCTAACCCAAACCTCCCAGCTCTGTCATTCAAAGG",
:meanTHETA_BB "0.975",
:meanX_AA "1.429",
:zthresh_Y "0.166966902628",
:devTHETA_AA "0.019",
:ILLUMINA_CHR "1",
:meanY_AB "0.794",
:meanY_BB "1.215",
:PROBE_B ".",
:devX_AA "0.134",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.151",
:devY_BB "0.098",
:ALLELE_B "G*",
:N_AB "53",
:devR_BB "0.1",
:ILLUMINA_POS "932457",
:meanR_AA "1.483",
:devTHETA_AB "0.021",
:GC_SCORE "0.814",
:devY_AB "0.07",
:meanTHETA_AB "0.473",
:meanTHETA_AA "0.024",
:devX_AB "0.075",
:refSNP "rs1891910",
:meanR_BB "1.262",
:devR_AA "0.133",
:devTHETA_BB "0.009",
:meanX_BB "0.047",
:N_BB "205",
:meanX_AB "0.866"}}
{:ID "rs3128117",
"200557070005_R06C01" {:GT "0/1",
:IGC "0.808",
:GTZ "0/1",
:R "1.783",
:NORMY "0.843",
:BAF "0.504",
:LRR "0.027",
:GTA "0/1",
:THETA "0.465",
:Y "2835",
:NORMX "0.941",
:X "5784"},
:POS "944564",
:ALT "C",
:REF "T",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.754",
:devY_AA "0.027",
:zthresh_X "0.218964120731",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.026",
:meanY_AA "0.102",
:AF "0.500",
:N_AA "137",
:BEADSET_ID "927",
:ALLELE_A "T*",
:PROBE_A "GGGTTGCTGAACAATGTACCACAAACTGGGTGTTAAACTTCACACCACAG",
:meanTHETA_BB "0.974",
:meanX_AA "1.528",
:zthresh_Y "0.370218293792",
:devTHETA_AA "0.012",
:ILLUMINA_CHR "1",
:meanY_AB "0.823",
:meanY_BB "1.278",
:PROBE_B ".",
:devX_AA "0.121",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.13",
:devY_BB "0.1",
:ALLELE_B "C",
:N_AB "103",
:devR_BB "0.1",
:ILLUMINA_POS "944564",
:meanR_AA "1.631",
:devTHETA_AB "0.02",
:GC_SCORE "0.795",
:devY_AB "0.065",
:meanTHETA_AB "0.461",
:meanTHETA_AA "0.043",
:devX_AB "0.072",
:refSNP "rs3128117",
:meanR_BB "1.329",
:devR_AA "0.126",
:devTHETA_BB "0.013",
:meanX_BB "0.051",
:N_BB "23",
:meanX_AB "0.931"}}
{:ID "rs3128126",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.819",
:GTZ "0/0",
:R "0.478",
:NORMY "0.078",
:BAF "0.037",
:LRR "0.207",
:GTA "0/0",
:THETA "0.122",
:Y "276",
:NORMX "0.4",
:X "2428"},
:POS "962210",
:ALT "G",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "0.496",
:devY_AA "0.018",
:zthresh_X "0.173672420382",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.019",
:meanY_AA "0.046",
:AF "0.00",
:N_AA "138",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "CTGCCCCTCAGAGATGAGAAAAAGGAAGTGCAGGGCTGAGATATCACCCC",
:meanTHETA_BB "0.941",
:meanX_AA "0.361",
:zthresh_Y "0.146362310703",
:devTHETA_AA "0.027",
:ILLUMINA_CHR "1",
:meanY_AB "0.298",
:meanY_BB "0.478",
:PROBE_B ".",
:devX_AA "0.09",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.1",
:devY_BB "0.093",
:ALLELE_B "G",
:N_AB "104",
:devR_BB "0.1",
:ILLUMINA_POS "962210",
:meanR_AA "0.407",
:devTHETA_AB "0.036",
:GC_SCORE "0.802",
:devY_AB "0.062",
:meanTHETA_AB "0.627",
:meanTHETA_AA "0.081",
:devX_AB "0.042",
:refSNP "rs3128126",
:meanR_BB "0.522",
:devR_AA "0.1",
:devTHETA_BB "0.024",
:meanX_BB "0.044",
:N_BB "22",
:meanX_AB "0.198"}}
{:ID "rs2465136",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.917",
:GTZ "0/0",
:R "1.383",
:NORMY "0.074",
:BAF "0.008",
:LRR "0.167",
:GTA "0/0",
:THETA "0.036",
:Y "288",
:NORMX "1.309",
:X "7940"},
:POS "990417",
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{:ID "rs7526076",
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{:ID "rs9442372",
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{:ID "rs10907178",
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{:ID "rs6687776",
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{:ID "rs6671356",
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{:ID "rs9442373",
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{:ID "rs10907182",
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{:ID "rs9442385",
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{:ID "rs4442317",
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{:ID "rs11260542",
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{:ID "rs12092254",
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{:ID "rs11260549",
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{:ID "rs10907175",
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{:ID "rs3819001",
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{:ID "rs3813199",
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{:ID "rs7515488",
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{:ID "rs4018608",
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{:ID "rs3737721",
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{:ID "rs3845293",
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{:ID "rs307354",
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{:ID "rs307380",
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{:ID "rs17160669",
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{:ID "rs1240707",
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{:ID "rs1240708",
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{:ID "rs873927",
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{:ID "rs36044796",
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{:ID "rs819980",
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{:ID "rs6690515",
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{:ID "rs6669795",
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{:ID "rs12032637",
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{:ID "rs1571149",
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{:ID "rs2031709",
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{:ID "rs7531530",
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{:ID "rs6604983",
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{:ID "rs28635343",
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{:ID "rs28464684",
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{:ID "rs909823",
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{:ID "rs3817856",
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{:ID "rs1014988",
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{:ID "rs7407",
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{:ID "rs6603811",
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{:ID "rs12041925",
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{:ID "rs742359",
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{:ID "rs4648727",
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{:ID "rs3855951",
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{:ID "rs7525092",
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{:ID "rs16824526",
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{:ID "rs2247560",
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{:ID "rs28710181",
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{:ID "rs28508199",
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{:ID "rs2250833",
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{:ID "rs2803316",
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{:ID "rs3820011",
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{:ID "rs16824588",
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{:ID "rs3795283",
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{:ID "rs6656398",
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{:ID "rs13303016",
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{:ID "rs2376803",
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{:ID "rs6605074",
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{:ID "rs6663158",
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{:ID "rs2803310",
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{:ID "rs2459994",
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{:ID "rs884080",
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{:ID "rs7513222",
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{:ID "rs10910030",
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{:ID "rs12410859",
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{:ID "rs4648807",
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{:ID "rs4648808",
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{:ID "rs424079",
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{:ID "rs2257182",
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{:ID "rs262643",
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{:ID "rs7512482",
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{:ID "rs2460000",
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{:ID "rs263526",
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{:ID "rs260513",
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{:ID "rs12084736",
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{:ID "rs903908",
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{:ID "rs10910047",
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{:ID "rs2017143",
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:GC_SCORE "0.879",
:devY_AB "0.066",
:meanTHETA_AB "0.555",
:meanTHETA_AA "0.028",
:devX_AB "0.057",
:refSNP "rs2017143",
:meanR_BB "0.89",
:devR_AA "0.114",
:devTHETA_BB "0.013",
:meanX_BB "0.044",
:N_BB "68",
:meanX_AB "0.438"}}
{:ID "rs884940",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.853",
:GTZ "0/0",
:R "1.513",
:NORMY "1.444",
:BAF "0.99",
:LRR "0.096",
:GTA "0/0",
:THETA "0.969",
:Y "4813",
:NORMX "0.069",
:X "560"},
:POS "2223866",
:ALT "T",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.742",
:devY_AA "0.026",
:zthresh_X "0.150034730075",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.018",
:meanY_AA "0.034",
:AF "0.00",
:N_AA "40",
:BEADSET_ID "927",
:ALLELE_A "T",
:PROBE_A "TGGGTGCCCCATGAAGGACTGAGCAGTGGGGTGACCCTTCATCTAGCAGA",
:meanTHETA_BB "0.979",
:meanX_AA "1.49",
:zthresh_Y "0.164770432987",
:devTHETA_AA "0.011",
:ILLUMINA_CHR "1",
:meanY_AB "0.881",
:meanY_BB "1.364",
:PROBE_B ".",
:devX_AA "0.126",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.122",
:devY_BB "0.098",
:ALLELE_B "C*",
:N_AB "108",
:devR_BB "0.1",
:ILLUMINA_POS "2223866",
:meanR_AA "1.524",
:devTHETA_AB "0.021",
:GC_SCORE "0.826",
:devY_AB "0.07",
:meanTHETA_AB "0.507",
:meanTHETA_AA "0.014",
:devX_AB "0.069",
:refSNP "rs884940",
:meanR_BB "1.409",
:devR_AA "0.126",
:devTHETA_BB "0.009",
:meanX_BB "0.045",
:N_BB "115",
:meanX_AB "0.862"}}
{:ID "rs2645065",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.848",
:GTZ "0/0",
:R "0.934",
:NORMY "0.862",
:BAF "0.995",
:LRR "0.096",
:GTA "0/0",
:THETA "0.947",
:Y "2877",
:NORMX "0.072",
:X "519"},
:POS "2261222",
:ALT "A",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.273",
:devY_AA "0.041",
:zthresh_X "0.185183892876",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.018",
:meanY_AA "0.051",
:AF "0.00",
:N_AA "2",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "CATCACGTGGGCCCCTTTGGGTCTGTCGAGGGTCTATTTCAGATAGTGTT",
:meanTHETA_BB "0.952",
:meanX_AA "1.272",
:zthresh_Y "0.175617204577",
:devTHETA_AA "0.021",
:ILLUMINA_CHR "1",
:meanY_AB "0.506",
:meanY_BB "0.81",
:PROBE_B ".",
:devX_AA "0.126",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.129",
:devY_BB "0.094",
:ALLELE_B "C*",
:N_AB "49",
:devR_BB "0.1",
:ILLUMINA_POS "2261222",
:meanR_AA "1.323",
:devTHETA_AB "0.025",
:GC_SCORE "0.822",
:devY_AB "0.056",
:meanTHETA_AB "0.371",
:meanTHETA_AA "0.026",
:devX_AB "0.079",
:refSNP "rs2645065",
:meanR_BB "0.87",
:devR_AA "0.124",
:devTHETA_BB "0.014",
:meanX_BB "0.061",
:N_BB "213",
:meanX_AB "0.767"}}
{:ID "rs903904",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.78",
:GTZ "0/0",
:R "0.567",
:NORMY "0.524",
:BAF "1",
:LRR "0.244",
:GTA "0/0",
:THETA "0.948",
:Y "1751",
:NORMX "0.043",
:X "307"},
:POS "2263888",
:ALT "T",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "0.523",
:devY_AA "0.016",
:zthresh_X "0.165896417592",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.021",
:meanY_AA "0.054",
:AF "0.00",
:N_AA "10",
:BEADSET_ID "927",
:ALLELE_A "T",
:PROBE_A "TGCTCCCTGTCCTTGGTCCACACTCAGGTTCTTCCAGTGGGATGGGCGAC",
:meanTHETA_BB "0.919",
:meanX_AA "0.429",
:zthresh_Y "0.169019605045",
:devTHETA_AA "0.019",
:ILLUMINA_CHR "1",
:meanY_AB "0.251",
:meanY_BB "0.427",
:PROBE_B ".",
:devX_AA "0.09",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.1",
:devY_BB "0.09",
:ALLELE_B "C*",
:N_AB "55",
:devR_BB "0.1",
:ILLUMINA_POS "2263888",
:meanR_AA "0.483",
:devTHETA_AB "0.032",
:GC_SCORE "0.778",
:devY_AB "0.05",
:meanTHETA_AB "0.475",
:meanTHETA_AA "0.079",
:devX_AB "0.054",
:refSNP "rs903904",
:meanR_BB "0.481",
:devR_AA "0.1",
:devTHETA_BB "0.029",
:meanX_BB "0.054",
:N_BB "199",
:meanX_AB "0.272"}}
{:ID "rs2055204",
"200557070005_R06C01" {:GT "1/0",
:IGC "0.901",
:GTZ "1/0",
:R "1.116",
:NORMY "0.546",
:BAF "0.466",
:LRR "0.179",
:GTA "1/0",
:THETA "0.487",
:Y "1840",
:NORMX "0.569",
:X "3502"},
:POS "2280661",
:ALT "A",
:REF "G",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "0.992",
:devY_AA "0.018",
:zthresh_X "0.171572596858",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.02",
:meanY_AA "0.038",
:AF "0.500",
:N_AA "86",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "GGTAAAAGCTTAAGCTTTCAGGTTCCCTCCTCCTCCACAGGTCCTTTTCT",
:meanTHETA_BB "0.962",
:meanX_AA "0.851",
:zthresh_Y "0.140284040763",
:devTHETA_AA "0.013",
:ILLUMINA_CHR "1",
:meanY_AB "0.512",
:meanY_BB "0.802",
:PROBE_B ".",
:devX_AA "0.106",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.123",
:devY_BB "0.096",
:ALLELE_B "G*",
:N_AB "97",
:devR_BB "0.1",
:ILLUMINA_POS "2280661",
:meanR_AA "0.889",
:devTHETA_AB "0.027",
:GC_SCORE "0.864",
:devY_AB "0.06",
:meanTHETA_AB "0.52",
:meanTHETA_AA "0.029",
:devX_AB "0.057",
:refSNP "rs2055204",
:meanR_BB "0.851",
:devR_AA "0.109",
:devTHETA_BB "0.016",
:meanX_BB "0.048",
:N_BB "81",
:meanX_AB "0.48"}}
{:ID "rs7527871",
"200557070005_R06C01" {:GT "0/1",
:IGC "0.832",
:GTZ "0/1",
:R "1.715",
:NORMY "0.86",
:BAF "0.539",
:LRR "0.008",
:GTA "0/1",
:THETA "0.502",
:Y "2891",
:NORMX "0.855",
:X "5267"},
:POS "2281726",
:ALT "C",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.739",
:devY_AA "0.019",
:zthresh_X "0.172062859333",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.03",
:meanY_AA "0.042",
:AF "0.500",
:N_AA "153",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "AATATCTGGCAATAGTCCATGTCTTGGAAATCATCTTTTCTTCTCAACGA",
:meanTHETA_BB "0.975",
:meanX_AA "1.508",
:zthresh_Y "0.138849257375",
:devTHETA_AA "0.008",
:ILLUMINA_CHR "1",
:meanY_AB "0.817",
:meanY_BB "1.269",
:PROBE_B ".",
:devX_AA "0.106",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.116",
:devY_BB "0.106",
:ALLELE_B "C",
:N_AB "95",
:devR_BB "0.105",
:ILLUMINA_POS "2281726",
:meanR_AA "1.549",
:devTHETA_AB "0.025",
:GC_SCORE "0.811",
:devY_AB "0.061",
:meanTHETA_AB "0.462",
:meanTHETA_AA "0.018",
:devX_AB "0.066",
:refSNP "rs7527871",
:meanR_BB "1.319",
:devR_AA "0.107",
:devTHETA_BB "0.015",
:meanX_BB "0.05",
:N_BB "14",
:meanX_AB "0.922"}}
{:ID "rs10910053",
"200557070005_R06C01" {:GT "1/0",
:IGC "0.665",
:GTZ "1/0",
:R "0.52",
:NORMY "0.24",
:BAF "0.431",
:LRR "0.558",
:GTA "1/0",
:THETA "0.452",
:Y "814",
:NORMX "0.28",
:X "1714"},
:POS "2282135",
:ALT "A",
:REF "G",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "0.347",
:devY_AA "0.022",
:zthresh_X "0.164176240584",
:ILLUMINA_STRAND "BOT",
:devX_BB "0.022",
:meanY_AA "0.06",
:AF "0.500",
:N_AA "31",
:BEADSET_ID "927",
:ALLELE_A "A",
:PROBE_A "GTCTCTGGACTGAAGGAAGCAGAAGGCCCTGGAGGGCACCTCCTGCTGGG",
:meanTHETA_BB "0.898",
:meanX_AA "0.334",
:zthresh_Y "0.166973435529",
:devTHETA_AA "0.034",
:ILLUMINA_CHR "1",
:meanY_AB "0.175",
:meanY_BB "0.287",
:PROBE_B ".",
:devX_AA "0.086",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.1",
:devY_BB "0.088",
:ALLELE_B "G*",
:N_AB "101",
:devR_BB "0.1",
:ILLUMINA_POS "2282135",
:meanR_AA "0.393",
:devTHETA_AB "0.048",
:GC_SCORE "0.713",
:devY_AB "0.052",
:meanTHETA_AB "0.507",
:meanTHETA_AA "0.113",
:devX_AB "0.051",
:refSNP "rs10910053",
:meanR_BB "0.334",
:devR_AA "0.1",
:devTHETA_BB "0.042",
:meanX_BB "0.047",
:N_BB "132",
:meanX_AB "0.172"}}
{:ID "rs4648831",
"200557070005_R06C01" {:GT "0/0",
:IGC "0.851",
:GTZ "0/0",
:R "1.359",
:NORMY "1.246",
:BAF "0.998",
:LRR "0.067",
:GTA "0/0",
:THETA "0.942",
:Y "3966",
:NORMX "0.113",
:X "867"},
:POS "2283117",
:ALT "T",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.476",
:devY_AA "0.035",
:zthresh_X "0.291167241956",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.027",
:meanY_AA "0.097",
:AF "0.00",
:N_AA "6",
:BEADSET_ID "946",
:ALLELE_A "T",
:PROBE_A "TTGTGATGAGTTCAGAAAGATGAAACTAAAGAATGCGAAGCAACCAGCAC",
:meanTHETA_BB "0.944",
:meanX_AA "1.152",
:zthresh_Y "0.202340927754",
:devTHETA_AA "0.02",
:ILLUMINA_CHR "1",
:meanY_AB "0.818",
:meanY_BB "1.191",
:PROBE_B ".",
:devX_AA "0.106",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "0",
:SOURCE "dbSNP",
:devR_AB "0.133",
:devY_BB "0.095",
:ALLELE_B "C*",
:N_AB "38",
:devR_BB "0.1",
:ILLUMINA_POS "2283117",
:meanR_AA "1.249",
:devTHETA_AB "0.024",
:GC_SCORE "0.824",
:devY_AB "0.067",
:meanTHETA_AB "0.569",
:meanTHETA_AA "0.054",
:devX_AB "0.056",
:refSNP "rs4648831",
:meanR_BB "1.297",
:devR_AA "0.109",
:devTHETA_BB "0.015",
:meanX_BB "0.106",
:N_BB "220",
:meanX_AB "0.658"}}
{:ID "rs2843130",
"200557070005_R06C01" {:GT "1/1",
:IGC "0.742",
:GTZ "1/1",
:R "1.272",
:NORMY "1.202",
:BAF "1",
:LRR "-0.064",
:GTA "1/1",
:THETA "0.963",
:Y "4549",
:NORMX "0.07",
:X "419"},
:POS "2283313",
:ALT "G",
:REF "C",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.84",
:devY_AA "0.029",
:zthresh_X "0.213278991968",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.022",
:meanY_AA "0.097",
:AF "1.00",
:N_AA "14",
:BEADSET_ID "927",
:ALLELE_A "C*",
:PROBE_A "CCTCATACCAGGTTCAGAAGCTCCAAGTTTAACTGTGGACATTGGATCTC",
:meanTHETA_BB "0.956",
:meanX_AA "1.187",
:zthresh_Y "0.186192344854",
:devTHETA_AA "0.016",
:ILLUMINA_CHR "1",
:meanY_AB "0.904",
:meanY_BB "1.251",
:PROBE_B "CCTCATACCAGGTTCAGAAGCTCCAAGTTTAACTGTGGACATTGGATCTG",
:devX_AA "0.108",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "2",
:SOURCE "dbSNP",
:devR_AB "0.175",
:devY_BB "0.098",
:ALLELE_B "G",
:N_AB "66",
:devR_BB "0.102",
:ILLUMINA_POS "2283313",
:meanR_AA "1.284",
:devTHETA_AB "0.024",
:GC_SCORE "0.756",
:devY_AB "0.066",
:meanTHETA_AB "0.489",
:meanTHETA_AA "0.052",
:devX_AB "0.067",
:refSNP "rs2843130",
:meanR_BB "1.337",
:devR_AA "0.113",
:devTHETA_BB "0.011",
:meanX_BB "0.086",
:N_BB "184",
:meanX_AB "0.936"}}
{:ID "rs2840528",
"200557070005_R06C01" {:GT "0/1",
:IGC "0.881",
:GTZ "0/1",
:R "1.197",
:NORMY "0.613",
:BAF "0.448",
:LRR "0.26",
:GTA "0/1",
:THETA "0.516",
:Y "2063",
:NORMX "0.584",
:X "3596"},
:POS "2283896",
:ALT "G",
:REF "A",
:CHROM "1",
:FILTER ["."],
:QUAL ".",
:INFO {:meanR_AB "1.017",
:devY_AA "0.017",
:zthresh_X "0.171882074746",
:ILLUMINA_STRAND "TOP",
:devX_BB "0.017",
:meanY_AA "0.043",
:AF "0.500",
:N_AA "55",
:BEADSET_ID "927",
:ALLELE_A "A*",
:PROBE_A "GAAGTCACCGTGGCTGGGCTGAAGCCACTCTAGTGTTGTTTGCTAAAAGT",
:meanTHETA_BB "0.969",
:meanX_AA "0.806",
:zthresh_Y "0.13940796503",
:devTHETA_AA "0.013",
:ILLUMINA_CHR "1",
:meanY_AB "0.566",
:meanY_BB "0.878",
:PROBE_B ".",
:devX_AA "0.096",
:ILLUMINA_BUILD "37",
:AN "2",
:AC "1",
:SOURCE "dbSNP",
:devR_AB "0.1",
:devY_BB "0.097",
:ALLELE_B "G",
:N_AB "130",
:devR_BB "0.1",
:ILLUMINA_POS "2283896",
:meanR_AA "0.849",
:devTHETA_AB "0.043",
:GC_SCORE "0.847",
:devY_AB "0.065",
:meanTHETA_AB "0.572",
:meanTHETA_AA "0.034",
:devX_AB "0.056",
:refSNP "rs2840528",
:meanR_BB "0.921",
:devR_AA "0.1",
:devTHETA_BB "0.013",
:meanX_BB "0.042",
:N_BB "79",
:meanX_AB "0.451"}}
...)
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