Created
February 8, 2018 21:41
-
-
Save tbrittoborges/5c3c7fe7b125d56c8759d4a0e18456a7 to your computer and use it in GitHub Desktop.
code for the Carina website
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| def analyse(genome, set_a, match_a='any', region_a='any', | |
| set_b=None, match_b='any', region_b='any', | |
| combine='or', genes=None, window_a=-1, window_b=-1, | |
| datadir=None): | |
| # It takes the name of the genome assembly to use, and at least a list of set A regulator names. | |
| # A simple analysis run with a custom regulator would be: | |
| from dorina.run import analyse | |
| results = analyse('hg19', ['/path/to/custom/regulator.bed', 'PARCLIP_PUM2_hg19']) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment