Created
January 10, 2025 14:42
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converting seqname among different database styles
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| if (!require("BiocManager", quietly = TRUE)) | |
| install.packages("BiocManager") | |
| BiocManager::install("VariantAnnotation") | |
| library("VariantAnnotation") | |
| vcf <- readVcf("/home/aschuhegger/genomics/mills_and_1000G.indels.vcf.gz") | |
| vcf@rowRanges | |
| seqlevelsStyle(vcf@rowRanges) <- 'Ensembl' | |
| vcf@rowRanges |
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