Created
November 3, 2016 13:58
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| noninteractive-alignment-panel.py \ | |
| $json_option \ | |
| $fastq_option \ | |
| --matcher diamond \ | |
| --outputDir out \ | |
| --withScoreBetterThan 40 \ | |
| --maxTitles 200 \ | |
| --minMatchingReads 2 \ | |
| --minCoverage 0.1 \ | |
| --minNewReads 0.1 \ | |
| --negativeTitleRegex phage \ | |
| --diamondDatabaseFastaFilename $dbfile > summary | |
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