gistfile1.py

class ReadHit(object):
    """
    Holds information about a single read hit.

    @param read: A C{Read} instance.
    @param alignments: A C{list} of alignments. Each alignment is a C{dict} of
        the following form:

        {
          "hsps": [
            {
              "score": 293.432,
              "frame": [ 1, 1 ],  # Optional, used if nucleotides are involved.
              "readSubsequence": "CGCC",
              "readEnd": 492,
              "readStart": 31,
              "readEndInHit": 2926446,
              "readStartInHit": 2925990,
              "hitSubsequence": "CGCC",
              "hitEnd": 2926446,
              "hitStart": 2925990
            }
          ],
          "length": 5371077,
          "title": "gi|2577609|dbj|AP01960.1| Escherichia coli DNA"
        }

    """
    def __init__(self, read, alignments):
        self.read = read
        self.alignments = alignments