Terry Jones terrycojones
terrycojones
/ hsp.txt
Last active
April 27, 2016 17:22
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| queryStartInSubject queryEndInSubject | |
| | | | |
| | | | |
| | subjectBinStart |subjectBinEnd | |
| | | || | |
| | | || | |
| Subject: .................SSS..SSSS.....SSSS................. | |
| Query: .....QQQ..QQQQ...QQQQ | |
| | | |
terrycojones
/ pypy.py
Created
April 18, 2016 15:29
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| import platform | |
| pypy = platform.python_implementation() == 'PyPy' |
terrycojones
/ dirichlet
Last active
March 29, 2016 16:37
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| from scipy.stats import dirichlet | |
| >>> dirichlet.logpdf([0.4] + [(1.0 - 0.4) / 19] * 19, alpha=[0.05] * 20) | |
| 3.8604182571761925 | |
| >>> dirichlet.logpdf([0.6] + [(1.0 - 0.6) / 19] * 19, alpha=[0.05] * 20) | |
| 10.793871605825785 | |
| >>> dirichlet.logpdf([0.9] + [(1.0 - 0.9) / 19] * 19, alpha=[0.05] * 20) | |
| 35.431292971337086 | |
| >>> dirichlet.logpdf([0.95] + [(1.0 - 0.95) / 19] * 19, alpha=[0.05] * 20) | |
| 47.89123572023729 |
terrycojones
/ scale
Created
February 5, 2016 11:43
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| from math import floor, pow | |
| In [13]: def scale(d): | |
| ....: return int(floor(pow(d, 0.725))) | |
| ....: | |
| In [14]: for i in range(30): | |
| ....: print('%2d %2d' % (i, scale(i))) | |
| ....: | |
| 0 0 |
terrycojones
/ score.py
Created
January 22, 2016 10:20
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| def bestBin(histogram, significantBins, significance): | |
| """ | |
| Calculate the overall match score ... | |
| @param: A sorted (by score) list of significant bins. | |
| """ | |
| return significantBins[0]['score'] |
terrycojones
/ gist:e36b40f15332f3779252
Last active
January 23, 2016 21:05
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| From [email protected] Fri Feb 17 15:25:04 1995 | |
| Return-Path: <[email protected]> | |
| Received: from mimbres.cs.unm.edu by sfi.santafe.edu (4.1/SMI-4.1) | |
| id AA17663; Fri, 17 Feb 95 15:25:03 MST | |
| Received: from mendel.cs.unm.edu by mimbres.cs.unm.edu (5.65/033093) with SMTP | |
| id <[email protected]>; Fri, 17 Feb 95 15:27:29 -0700 | |
| Received: from mendel.cs.unm.edu by mendel.cs.unm.edu (5.65/011293) | |
| id AA00566; Fri, 17 Feb 1995 15:23:36 -0700 | |
| Date: Fri, 17 Feb 1995 15:23:36 -0700 | |
| From: [email protected] |
terrycojones
/ gist:198d05e2d8186498d1dd
Created
December 13, 2015 21:22
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| $ l src/gor4/ | |
| total 136 | |
| -rw-r--r-- 1 terry staff 2074 Dec 7 20:56 README.md | |
| -rw-r--r-- 1 terry staff 4589 Dec 7 20:56 api.c | |
| -rw-r--r-- 1 terry staff 711 Dec 7 20:56 build.py | |
| -rw-r--r-- 1 terry staff 419 Dec 7 20:56 defines.h | |
| -rw-r--r-- 1 terry staff 26173 Dec 7 20:56 gor4-base.c | |
| -rw-r--r-- 1 terry staff 366 Dec 7 20:56 gor4-base.h | |
| -rw-r--r-- 1 terry staff 10768 May 1 2015 nrutil.c | |
| -rw-r--r-- 1 terry staff 3716 May 1 2015 nrutil.h |
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| $ trial /Users/terry/dark-matter/dark-matter/test | |
| fetching http://www.pythontest.net/unicode/gb-18030-2000.xml ... | |
| Traceback (most recent call last): | |
| File "/Users/terry/dark-matter/dark-matter/.tox/py27/bin/trial", line 22, in <module> | |
| run() | |
| File "/Users/terry/dark-matter/dark-matter/.tox/py27/lib/python2.7/site-packages/twisted/scripts/trial.py", line 612, in run | |
| suite = _getSuite(config) | |
| File "/Users/terry/dark-matter/dark-matter/.tox/py27/lib/python2.7/site-packages/twisted/scripts/trial.py", line 500, in _getSuite | |
| return loader.loadByNames(config['tests'], recurse=recurse) | |
| File "/Users/terry/dark-matter/dark-matter/.tox/py27/lib/python2.7/site-packages/twisted/trial/runner.py", line 609, in loadByNames |
terrycojones
/ gist:73333f7658e92f5c57af
Created
November 17, 2015 10:00
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| Debugger entered--Lisp error: (wrong-type-argument integerp nil) | |
| yas--populate-template([cl-struct-yas--template nil nil nil nil nil nil nil nil nil nil nil nil] :table [cl-struct-yas--table "python-mode" #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) nil (keymap)] :key "super" :content "super`(elpy-snippet-super-form)`(${1:`(elpy-snippet-super-arguments)`})\n$0" :name "super()" :group ("Definitions") :condition nil :expand-env nil :file "/Users/terry/.emacs.d/elpa/elpy-1.10.0/snippets/python-mode/super" :keybinding nil :uuid "super()") | |
| yas-define-snippets-1(("super" "super`(elpy-snippet-super-form)`(${1:`(elpy-snippet-super-arguments)`})\n$0" "super()" nil ("Definitions") nil "/Users/terry/.emacs.d/elpa/elpy-1.10.0/snippets/python-mode/super" nil nil) [cl-struct-yas--table "python-mode" #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) #s(hash-table size |
terrycojones
/ gist:c1113ccba31c0a4426cb
Created
November 17, 2015 09:33
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| Debugger entered--Lisp error: (wrong-type-argument integerp nil) | |
| yas--populate-template([cl-struct-yas--template nil nil nil nil nil nil nil nil nil nil nil nil] :table [cl-struct-yas--table "python-mode" #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) nil (keymap)] :key "while" :content "while ${condition}:\n $0" :name "while ... : ..." :group nil :condition nil :expand-env nil :file "/Users/terry/.emacs.d/elpa/yasnippet-0.8.0/snippets/python-mode/while" :keybinding nil :uuid "while ... : ...") | |
| yas-define-snippets-1(("while" "while ${condition}:\n $0" "while ... : ..." nil nil nil "/Users/terry/.emacs.d/elpa/yasnippet-0.8.0/snippets/python-mode/while" nil nil) [cl-struct-yas--table "python-mode" #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) #s(hash-table size 65 test equal rehash-size 1.5 rehash-threshold 0.8 data ( ...)) nil (keymap)]) | |
| yas-def |