terrycojones

 346967 15
 351869 16
 349097 17
 339779 18
 335678 19
 349134 20
 336594 21
 351668 22
 353160 23
 355379 24

terrycojones

noninteractive-alignment-panel.py \
  $json_option \
  $fastq_option \
  --matcher diamond \
  --outputDir out \
  --withScoreBetterThan 40 \
  --maxTitles 200 \
  --minMatchingReads 2 \
  --minCoverage 0.1 \
  --minNewReads 0.1 \

terrycojones

#!/usr/bin/perl

# Usage: rename perlexpr [files]

($op = shift) || die "Usage: rename perlexpr [filenames]\n";
if (!@ARGV) {
    @ARGV = <STDIN>;
    chop(@ARGV);
}
for (@ARGV) {

terrycojones

#!/usr/bin/env python

from PIL import Image
# from images2gif import writeGif
from visvis.vvmovie.images2gif import writeGif
import sys


def main(images):
    writeGif('out.gif', images)

terrycojones

1972        1
1973        3
1974        1
1975       17
1976       22
1977        8
1978        1
1979       17
1980       13
1981       20

terrycojones

Processing year 1972 ... done in 0.02 seconds
Processing year 1973 ... done in 0.10 seconds
Processing year 1974 ... done in 0.05 seconds
Processing year 1975 ... done in 0.07 seconds
Processing year 1976 ... done in 0.24 seconds
Processing year 1977 ... done in 0.13 seconds
Processing year 1978 ... done in 0.12 seconds
Processing year 1979 ... done in 0.41 seconds
Processing year 1980 ... done in 0.14 seconds
Processing year 1981 ... done in 0.21 seconds

terrycojones

#!/bin/sh

for id in 5DTG
do
    newid=`curl -v --max-redirs 1 -L "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id" 2>&1 | \
        egrep Location | tail -n 1 | cut -d= -f3`
    if [ $id != $newid ]
    then
        echo "$id was renamed to $newid"
    fi

terrycojones

from twisted.internet import defer


def queryAll(self, n):

    def ignoreCancellation(error):
        error.trap(defer.CancelledError)

    return defer.DeferredList(
        self.query().addErrback(ignoreCancellation) for _ in range(n))

terrycojones

#!/bin/sh

case $# in
    4)
        jobId=$1
        pdbFile=$2
        ;;

    *) echo "Usage: `basename $0` jobId ...." >&2 ;;
esac

terrycojones

                                queryStartInSubject
                                |               queryEndInSubject
                                |               |
                                |               |
                               subjectBinStart  |subjectBinEnd
                               ||               ||
                               ||               ||
    Subject:  .................SSS..SSSS.....SSSS.................
    Query:                      QQQ..QQQQ...QQQQ
                                |               |