terrymun · November 27, 2016 22:05
diff --git a/interproscan_job.sh b/interproscan_job.sh
 #!/bin/bash
 shopt -s nullglob
 for fasta in $(find `pwd` -type f -name "*.fa" | sort)
 do
  # Create your jobscript here.
  # And the command you should run in your jobscript:
  # /path/to/interproscan.sh -i $fasta -dp -iprlookup --goterms --pathways
 done
	#!/bin/bash
	shopt -s nullglob
	for fasta in $(find `pwd` -type f -name "*.fa" \| sort)
	do
	# Create your jobscript here.
	# And the command you should run in your jobscript:
	# /path/to/interproscan.sh -i $fasta -dp -iprlookup --goterms --pathways
	done