Last active
August 29, 2015 14:13
-
-
Save thash/ceb5a937abb9b50186a6 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ brew install jq |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola" | |
| <?xml version="1.0" encoding="UTF-8"?> | |
| <!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD esearch 20060628//EN" "http://eutils.ncbi.nlm.nih.gov/eutils/dtd/20060628/esearch.dtd"> | |
| <eSearchResult><Count>2819</Count><RetMax>20</RetMax><RetStart>0</RetStart><IdList> | |
| <Id>25587816</Id> | |
| <Id>25585832</Id> | |
| ... | |
| <Id>25580233</Id> | |
| </IdList><TranslationSet><Translation> <From>ebola</From> <To>"hemorrhagic fever, ebola"[MeSH Terms] OR ("hemorrhagic"[All Fields] AND "fever"[All Fields] AND "ebola"[All Fields]) OR "ebola hemorrhagic fever"[All Fields] OR "ebola"[All Fields] OR "ebolavirus"[MeSH Terms] OR "ebolavirus"[All Fields]</To> </Translation></TranslationSet><TranslationStack> <TermSet> <Term>"hemorrhagic fever, ebola"[MeSH Terms]</Term> <Field>MeSH Terms</Field> <Count>1033</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"hemorrhagic"[All Fields]</Term> <Field>All Fields</Field> <Count>60599</Count> <Explode>N</Explode> </TermSet> <TermSet> <Term>"fever"[All Fields]</Term> <Field>All Fields</Field> <Count>164827</Count> <Explode>N</Explode> </TermSet> <OP>AND</OP> <TermSet> <Term>"ebola"[All Fields]</Term> <Field>All Fields</Field> <Count>2698</Count> <Explode>N</Explode> </TermSet> <OP>AND</OP> <OP>GROUP</OP> <OP>OR</OP> <TermSet> <Term>"ebola hemorrhagic fever"[All Fields]</Term> <Field>All Fields</Field> <Count>1076</Count> <Explode>N</Explode> </TermSet> <OP>OR</OP> <TermSet> <Term>"ebola"[All Fields]</Term> <Field>All Fields</Field> <Count>2698</Count> <Explode>N</Explode> </TermSet> <OP>OR</OP> <TermSet> <Term>"ebolavirus"[MeSH Terms]</Term> <Field>MeSH Terms</Field> <Count>1169</Count> <Explode>Y</Explode> </TermSet> <OP>OR</OP> <TermSet> <Term>"ebolavirus"[All Fields]</Term> <Field>All Fields</Field> <Count>1259</Count> <Explode>N</Explode> </TermSet> <OP>OR</OP> <OP>GROUP</OP> </TranslationStack><QueryTranslation>"hemorrhagic fever, ebola"[MeSH Terms] OR ("hemorrhagic"[All Fields] AND "fever"[All Fields] AND "ebola"[All Fields]) OR "ebola hemorrhagic fever"[All Fields] OR "ebola"[All Fields] OR "ebolavirus"[MeSH Terms] OR "ebolavirus"[All Fields]</QueryTranslation></eSearchResult> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require 'open-uri' | |
| require 'json' | |
| require 'hashie' | |
| response = open('http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola&retmode=json') | |
| data = response.read | |
| json = JSON.parse(data) | |
| mash = Hashie::Mash.new(json) | |
| mash.esearchresult.idlist # => => ["25587816", "25585832", "25585771", ... |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ cat users.json | jq '.users[].name' | |
| "Alice" | |
| "Bob" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ curl -s "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola&retmode=json" \ | |
| | jq '.esearchresult.idlist[]' | |
| "25587816" | |
| "25585832" | |
| "25585771" | |
| "25585757" | |
| "25585723" | |
| "25585496" | |
| "25585384" | |
| "25584879" | |
| "25584356" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ cat users.json | jq '.users[] | select(.age < 25)' | |
| { | |
| "name": "Alice", | |
| "age": 24, | |
| "lang": "Ruby" | |
| } |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require 'open-uri' | |
| require 'json' | |
| response = open('http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola&retmode=json') | |
| data = response.read | |
| json = JSON.parse(data) | |
| puts json.class # => Hash | |
| puts json.keys # => header esearchresult | |
| puts json['esearchresult']['count'] # => 2819 | |
| puts json['esearchresult']['idlist'] # => 25587816 25585832 25585771 ... |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| $ curl -s "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola&retmode=json" | head -n 20 | |
| { | |
| "header": { | |
| "type": "esearch", | |
| "version": "0.3" | |
| }, | |
| "esearchresult": { | |
| "count": "2819", | |
| "retmax": "20", | |
| "retstart": "0", | |
| "idlist": [ | |
| "25587816", | |
| "25585832", | |
| "25585771", | |
| "25585757", | |
| "25585723", | |
| "25585496", | |
| "25585384", | |
| "25584879", | |
| "25584356", | |
| "25584153", |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require 'open-uri' | |
| response = open('http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=ebola&retmode=json') | |
| # response.class #=> StringIO | |
| # response.read.class #=> String | |
| puts response.read | |
| #=> { | |
| # "header": { | |
| # "type": "esearch", | |
| # "version": "0.3" | |
| # }, | |
| # "esearchresult": { | |
| # "count": "2819", | |
| # "retmax": "20", | |
| # "retstart": "0", | |
| # "idlist": [ | |
| # "25587816", |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| {"users": [{"name": "Alice", "age": 24, "lang": "Ruby"}, {"name": "Bob", "age": 28, "lang": "Python"}]} |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment