Theo Sanderson theosanderson

Women in the History of Antimicrobial Development March 15, 2024

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Women working in a Penicillin factory. Women working in a Penicillin factory. Source: Wikimedia Commons

Okay, I need to write a story using only the vowel 'o'. Let me start by brainstorming possible words. Words with 'o' as the only vowel. Hmm. Let's see. First, the characters. Maybe a protagonist named Tom? Wait, no, 'Tom' has 'o' as the vowel. That works. Or maybe 'Bob'? Yes, Bob is good. Let's go with Bob. Now, setting. Maybe a small town? 'Town' is okay. Or a forest? 'Woods' has 'o' and 'o', so that's good.

Plot: Bob needs to solve a problem. Maybe he's looking for something. A lost dog? 'Dog' works. So Bob's dog, maybe named Spot? No, 'Spot' has 'o' as the vowel. Wait, 'Spot' has an 'o' and a 'o'? No, 'S' 'p' 'o' 't'—only 'o' as vowel. So Spot is okay. So Bob's dog Spot is lost. He goes to look for him. Maybe he goes through the woods, meets a fox? 'Fox' is good. The fox helps him. Then they find Spot. But how to structure sentences without other vowels.

Let me list some words. Nouns: Bob, dog, Spot, fox, log, rock, pond, frog, box, sock, clock, shop, top, fog, moss, lot, job, cot, lock, drop, plot, trot

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	# Example of how to run: tar -xJOf sequences_fasta_2024_04_25.tar.xz sequences.fasta \| python translate.py \| pv -l \| zstd > seqs.fa.zst
	import sys
	import tarfile
	import pandas as pd

	def load_virus_to_accession_dict(tar_path):
	""" Load the virus to accession ID dictionary from a tar.xz file containing a .tsv. """
	with tarfile.open(tar_path, 'r:xz') as tar:
	# Find the tsv file within the archive, assuming there's only one .tsv
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	LOCUS MN908947 29903 bp ss-RNA linear VRL 18-MAR-2020
	DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1,
	complete genome.
	ACCESSION MN908947
	VERSION MN908947.3
	KEYWORDS .
	SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
	ORGANISM Severe acute respiratory syndrome coronavirus 2
	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
	Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;