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August 27, 2018 16:12
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| C:\Anaconda\python.exe D:/programming/brian2/dev/tools/run_nose_tests_long_and_standalone.py | |
| INFO Cache size for target "cython": 1594 MB. | |
| You can call "clear_cache('cython')" to delete all files from the cache or manually delete files in the "C:\Users\dgoodman\.cython\brian_extensions" directory. [brian2] | |
| Running tests in D:\programming\brian2\brian2 for targets numpy, weave, cython (including long tests) | |
| Testing standalone | |
| Testing codegen-independent code | |
| Resetting to default preferences | |
| Setting dtype for floating point variables to: float32 | |
| Running tests that do not use code generation | |
| Doctest: brian2.codegen.optimisation.reduced_node ... ok | |
| Doctest: brian2.codegen.runtime.numpy_rt.numpy_rt.LazyArange ... ok | |
| Doctest: brian2.core.clocks.check_dt ... ok | |
| Doctest: brian2.core.network._format_time ... ok | |
| Doctest: brian2.core.operations.network_operation ... ok | |
| Doctest: brian2.core.preferences.parse_preference_name ... ok | |
| Doctest: brian2.core.variables.linked_var ... ok | |
| Doctest: brian2.input.timedarray.TimedArray ... ok | |
| Doctest: brian2.memory.dynamicarray.DynamicArray ... ok | |
| Doctest: brian2.monitors.spikemonitor.EventMonitor.all_values ... ok | |
| Doctest: brian2.monitors.spikemonitor.EventMonitor.values ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.all_values ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.spike_trains ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.values ... ok | |
| Doctest: brian2.monitors.statemonitor.StateMonitor.record_single_timestep ... ok | |
| Doctest: brian2.parsing.statements.parse_statement ... ok | |
| SKIP: Do not test sphinx extension | |
| Doctest: brian2.stateupdaters.base.extract_method_options ... ok | |
| Doctest: brian2.stateupdaters.explicit.ExplicitStateUpdater.__call__ ... ok | |
| Doctest: brian2.stateupdaters.explicit.split_expression ... ok | |
| Doctest: brian2.stateupdaters.exponential_euler.get_conditionally_linear_system ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.dot ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.fill ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.in_best_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.in_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.with_dimensions ... ok | |
| Doctest: brian2.units.fundamentalunits.Unit ... ok | |
| Doctest: brian2.units.fundamentalunits.check_units ... ok | |
| Doctest: brian2.units.fundamentalunits.get_or_create_dimension ... ok | |
| Doctest: brian2.units.fundamentalunits.in_best_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.in_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.quantity_with_dimensions ... ok | |
| Doctest: brian2.units.fundamentalunits.register_new_unit ... ok | |
| SKIP: Do not test numpy docstrings | |
| Doctest: brian2.utils.arrays.calc_repeats ... ok | |
| Doctest: brian2.utils.logger.catch_logs ... ok | |
| Doctest: brian2.utils.stringtools.deindent ... ok | |
| Doctest: brian2.utils.stringtools.get_identifiers ... ok | |
| Doctest: brian2.utils.stringtools.indent ... ok | |
| Doctest: brian2.utils.stringtools.strip_empty_lines ... ok | |
| Doctest: brian2.utils.stringtools.word_substitute ... ok | |
| brian2.tests.test_GSL.test_GSL_internal_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_stochastic ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| ok | |
| brian2.tests.test_GSL.test_GSL_failing_directory ... ok | |
| brian2.tests.test_base.test_base ... ok | |
| brian2.tests.test_base.test_names ... ok | |
| brian2.tests.test_base.test_duplicate_names ... ok | |
| brian2.tests.test_clocks.test_clock_attributes ... ok | |
| brian2.tests.test_clocks.test_clock_dt_change ... ok | |
| brian2.tests.test_clocks.test_defaultclock ... ok | |
| brian2.tests.test_clocks.test_set_interval_warning ... ok | |
| brian2.tests.test_codegen.test_auto_target ... ok | |
| Test that the analyse_identifiers function works on a simple clear example. ... ok | |
| Test finding identifiers including subexpressions. ... ok | |
| brian2.tests.test_codegen.test_write_to_subexpression ... ok | |
| brian2.tests.test_codegen.test_repeated_subexpressions ... ok | |
| This test checks that code translation works with nested subexpressions. ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_integer ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_boolean ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_no_optimisation ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_simplification ... WARNING The expression "i1 / 1" divides two integer values. In previous versions of Brian, this would have used either an integer ("flooring") or a floating point division, depending on the Python version and the code generation target. In the current version, it always uses a floating point division. Explicitly ask for an integer division ("//"), or turn one of the operands into a floating point value (e.g. replace "1/2" by "1.0/2") to no longer receive this warning. [brian2.parsing.bast.floating_point_division] | |
| ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_constant_evaluation ... ok | |
| brian2.tests.test_codegen.test_automatic_augmented_assignments ... ok | |
| Test creating expressions. ... ok | |
| brian2.tests.test_codestrings.test_split_stochastic ... ok | |
| Test the string representation of expressions and statements. Assumes that ... ok | |
| brian2.tests.test_devices.test_set_reset_device_implicit ... ok | |
| brian2.tests.test_devices.test_set_reset_device_explicit ... ok | |
| brian2.tests.test_equations.test_utility_functions ... ok | |
| brian2.tests.test_equations.test_identifier_checks ... ok | |
| Test the parsing of equation strings ... ok | |
| Test replacing variables via keyword arguments ... ok | |
| Tests for replacements that should not work ... ok | |
| brian2.tests.test_equations.test_substitute ... ok | |
| Test that the Equations constructor raises errors correctly ... ok | |
| brian2.tests.test_equations.test_unit_checking ... ok | |
| Test accessing the various properties of equation objects ... ok | |
| brian2.tests.test_equations.test_concatenation ... ok | |
| brian2.tests.test_equations.test_extract_subexpressions ... ok | |
| brian2.tests.test_equations.test_repeated_construction ... ok | |
| Test the string representation (only that it does not throw errors). ... ok | |
| brian2.tests.test_equations.test_ipython_pprint ... ok | |
| Make sure that symbolic constants are understood correctly by sympy ... ok | |
| brian2.tests.test_functions.test_timestep_function ... ok | |
| brian2.tests.test_functions.test_user_defined_function_discarding_units ... ok | |
| brian2.tests.test_functions.test_user_defined_function_discarding_units_2 ... ok | |
| brian2.tests.test_functions.test_function_implementation_container ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_access ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_resize_up_down ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_resize_down_up ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_shrink ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_access ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_resize_up_down ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_resize_down_up ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_shrink ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_smoothed_rate ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_smoothed_rate_incorrect ... ok | |
| brian2.tests.test_morphology.test_attributes_soma ... ok | |
| brian2.tests.test_morphology.test_attributes_soma_coordinates ... ok | |
| brian2.tests.test_morphology.test_attributes_cylinder ... ok | |
| brian2.tests.test_morphology.test_attributes_cylinder_coordinates ... ok | |
| brian2.tests.test_morphology.test_attributes_section ... ok | |
| brian2.tests.test_morphology.test_attributes_section_coordinates_single ... ok | |
| brian2.tests.test_morphology.test_attributes_section_coordinates_all ... ok | |
| brian2.tests.test_morphology.test_tree_cables_schematic ... ok | |
| brian2.tests.test_morphology.test_tree_cables_coordinates ... ok | |
| brian2.tests.test_morphology.test_tree_cables_from_points ... ok | |
| brian2.tests.test_morphology.test_tree_soma_schematic ... ok | |
| brian2.tests.test_morphology.test_tree_soma_coordinates ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points_3_point_soma ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points_3_point_soma_incorrect ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_swc ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_swc_3_point_soma ... ok | |
| brian2.tests.test_morphology.test_construction_incorrect_arguments ... ok | |
| brian2.tests.test_morphology.test_from_points_minimal ... ok | |
| brian2.tests.test_morphology.test_from_points_incorrect ... ok | |
| brian2.tests.test_morphology.test_subtree_deletion ... ok | |
| brian2.tests.test_morphology.test_subgroup_indices ... ok | |
| brian2.tests.test_morphology.test_subgroup_attributes ... ok | |
| brian2.tests.test_morphology.test_subgroup_incorrect ... ok | |
| brian2.tests.test_morphology.test_topology ... ok | |
| brian2.tests.test_morphology.test_copy_section_soma ... ok | |
| brian2.tests.test_morphology.test_copy_section_section ... ok | |
| brian2.tests.test_morphology.test_copy_section_cylinder ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_deterministic ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_sections ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_compartments ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_all ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_no_overwrite ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_overwrite ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_mixed_overwrite ... ok | |
| brian2.tests.test_morphology.test_str_repr ... ok | |
| Test that the default namespace contains standard units and functions. ... ok | |
| Test resolution with an explicitly provided namespace ... ok | |
| brian2.tests.test_namespaces.test_errors ... ok | |
| brian2.tests.test_namespaces.test_resolution ... ok | |
| brian2.tests.test_namespaces.test_warning ... ok | |
| brian2.tests.test_namespaces.test_warning_internal_variables ... ok | |
| Test some wrong uses of `Network` and `MagicNetwork` ... ok | |
| Test `Network.__contains__`. ... ok | |
| brian2.tests.test_network.test_empty_network ... ok | |
| brian2.tests.test_network.test_network_single_object ... ok | |
| brian2.tests.test_network.test_network_two_objects ... ok | |
| brian2.tests.test_network.test_network_from_dict ... ok | |
| brian2.tests.test_network.test_network_different_clocks ... ok | |
| brian2.tests.test_network.test_network_different_when ... ok | |
| brian2.tests.test_network.test_network_default_schedule ... ok | |
| brian2.tests.test_network.test_network_schedule_change ... ok | |
| brian2.tests.test_network.test_network_before_after_schedule ... ok | |
| brian2.tests.test_network.test_network_custom_slots ... ok | |
| brian2.tests.test_network.test_network_incorrect_schedule ... ok | |
| brian2.tests.test_network.test_schedule_warning ... ok | |
| brian2.tests.test_network.test_scheduling_summary_magic ... ok | |
| brian2.tests.test_network.test_scheduling_summary ... ok | |
| brian2.tests.test_network.test_magic_network ... ok | |
| brian2.tests.test_network.test_network_stop ... ok | |
| brian2.tests.test_network.test_network_operations ... ok | |
| brian2.tests.test_network.test_incorrect_network_operations ... ok | |
| brian2.tests.test_network.test_network_active_flag ... ok | |
| brian2.tests.test_network.test_network_t ... ok | |
| brian2.tests.test_network.test_incorrect_dt_defaultclock ... ok | |
| brian2.tests.test_network.test_incorrect_dt_custom_clock ... ok | |
| brian2.tests.test_network.test_network_remove ... ok | |
| brian2.tests.test_network.test_invalid_magic_network ... ok | |
| brian2.tests.test_network.test_multiple_networks_invalid ... ok | |
| Test that holding a weak reference to an object does not make it get ... ok | |
| Test that creating unused objects does not affect the magic system. ... ok | |
| brian2.tests.test_network.test_network_access ... ok | |
| brian2.tests.test_network.test_dependency_check ... ok | |
| Make sure all expected objects are collected in a magic network ... ok | |
| Very basic test of progress reporting ... ok | |
| Test wrong use of the report option ... ok | |
| brian2.tests.test_network.test_store_restore ... ok | |
| brian2.tests.test_network.test_store_restore_to_file ... ok | |
| brian2.tests.test_network.test_store_restore_to_file_new_objects ... ok | |
| brian2.tests.test_network.test_store_restore_to_file_differing_nets ... ok | |
| brian2.tests.test_network.test_store_restore_magic ... ok | |
| brian2.tests.test_network.test_store_restore_magic_to_file ... ok | |
| brian2.tests.test_network.test_store_restore_spikequeue ... ok | |
| brian2.tests.test_network.test_defaultclock_dt_changes ... ok | |
| brian2.tests.test_network.test_dt_restore ... ok | |
| brian2.tests.test_network.test_continuation ... ok | |
| brian2.tests.test_network.test_get_set_states ... ok | |
| brian2.tests.test_network.test_multiple_runs_defaultclock ... ok | |
| brian2.tests.test_network.test_multiple_runs_defaultclock_incorrect ... ok | |
| brian2.tests.test_network.test_profile_ipython_html ... ok | |
| Check that `start_scope` works as expected. ... ok | |
| brian2.tests.test_network.test_small_runs ... WARNING The expression "(i + 1) / N" divides two integer values. In previous versions of Brian, this would have used either an integer ("flooring") or a floating point division, depending on the Python version and the code generation target. In the current version, it always uses a floating point division. Explicitly ask for an integer division ("//"), or turn one of the operands into a floating point value (e.g. replace "1/2" by "1.0/2") to no longer receive this warning. [brian2.parsing.bast.floating_point_division] | |
| ok | |
| brian2.tests.test_network.test_long_run_dt_change ... ok | |
| A basic test that creating a NeuronGroup works. ... ok | |
| Test that integer operations and variable definitions work. ... ok | |
| Test the correct creation of the variables dictionary. ... ok | |
| brian2.tests.test_neurongroup.test_variableview_calculations ... ok | |
| Test incorrect uses of linked variables. ... ok | |
| Test linking a variable with an index specified as an array ... ok | |
| Test a "repeat"-like connection between two groups of different size ... ok | |
| Linked to a linked variable, without indices ... ok | |
| Linked to a linked variable, first without indices, second with indices ... ok | |
| Linked to a linked variable, first with indices, second without indices ... ok | |
| Linked to a linked variable, both use indices ... ok | |
| Link to a linked variable that links to a linked variable, all use indices ... ok | |
| Test linking a variable from a subgroup ... ok | |
| Test linking a variable from a subgroup with indexing ... ok | |
| Test errors when providing incorrect index arrays ... ok | |
| Test linking to a synaptic variable (should raise an error). ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_incorrect ... ok | |
| Test that the namespace does not have to be complete at creation time. ... ok | |
| brian2.tests.test_neurongroup.test_namespace_errors ... ok | |
| brian2.tests.test_neurongroup.test_namespace_warnings ... ok | |
| Test that unit errors in thresholds and resets are detected. ... ok | |
| Test that syntax errors are already caught at initialization time. ... ok | |
| brian2.tests.test_neurongroup.test_custom_events ... ok | |
| brian2.tests.test_neurongroup.test_incorrect_custom_event_definition ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_access ... ok | |
| brian2.tests.test_neurongroup.test_unknown_state_variables ... ok | |
| brian2.tests.test_neurongroup.test_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_subexpression_with_constant ... ok | |
| brian2.tests.test_neurongroup.test_scalar_parameter_access ... ok | |
| brian2.tests.test_neurongroup.test_scalar_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_constant_subexpression_order ... ok | |
| brian2.tests.test_neurongroup.test_subexpression_checks ... ok | |
| brian2.tests.test_neurongroup.test_repr ... ok | |
| brian2.tests.test_neurongroup.test_ipython_html ... ok | |
| brian2.tests.test_neurongroup.test_indices ... ok | |
| Check the utility function get_dtype ... ok | |
| brian2.tests.test_neurongroup.test_get_states ... ok | |
| brian2.tests.test_neurongroup.test_set_states ... ok | |
| brian2.tests.test_neurongroup.test_get_states_pandas ... ok | |
| brian2.tests.test_neurongroup.test_set_states_pandas ... ok | |
| brian2.tests.test_neurongroup.test_no_code ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_python ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_numpy ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_sympy ... ok | |
| brian2.tests.test_parsing.test_abstract_code_dependencies ... ok | |
| brian2.tests.test_parsing.test_is_boolean_expression ... ok | |
| brian2.tests.test_parsing.test_parse_expression_unit ... ok | |
| brian2.tests.test_parsing.test_value_from_expression ... ok | |
| brian2.tests.test_parsing.test_abstract_code_from_function ... ok | |
| brian2.tests.test_parsing.test_extract_abstract_code_functions ... ok | |
| brian2.tests.test_parsing.test_substitute_abstract_code_functions ... ok | |
| brian2.tests.test_parsing.test_sympytools ... ok | |
| brian2.tests.test_parsing.test_error_messages ... ok | |
| brian2.tests.test_poissongroup.test_rate_unit_check ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_namespace ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput_errors ... ok | |
| brian2.tests.test_preferences.test_defaultvalidator ... ok | |
| brian2.tests.test_preferences.test_brianpreference ... ok | |
| Test that you cannot set illegal preference names. ... ok | |
| brian2.tests.test_preferences.test_brianglobalpreferences ... ok | |
| Test various ways of accessing preferences ... ok | |
| brian2.tests.test_preferences.test_str_repr ... ok | |
| brian2.tests.test_refractory.test_add_refractoriness ... ok | |
| brian2.tests.test_refractory.test_missing_refractory_warning ... ok | |
| brian2.tests.test_refractory.test_refractoriness_types ... ok | |
| Test that the conditional_write attribute is set correctly ... ok | |
| brian2.tests.test_spatialneuron.test_custom_events ... ok | |
| brian2.tests.test_spatialneuron.test_construction ... ok | |
| brian2.tests.test_spatialneuron.test_construction_coordinates ... ok | |
| brian2.tests.test_spatialneuron.test_allowed_integration ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_indexing ... ok | |
| brian2.tests.test_spatialneuron.test_tree_index_consistency ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_subtree_assignment ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_morphology_assignment ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_incorrect_values ... ok | |
| Test that you cannot provide incorrect period arguments or combine ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_multiple_spikes_per_bin ... ok | |
| brian2.tests.test_spikequeue.test_spikequeue ... ok | |
| Test the parsing of explicit state updater descriptions. ... ok | |
| brian2.tests.test_stateupdaters.test_non_autonomous_equations ... ok | |
| Assure that __str__ and __repr__ do not raise errors ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_basic ... ok | |
| Make sure that the code does the distinction between temporary variables ... ok | |
| Make sure that the code does the distinction between temporary variables ... ok | |
| Check whether the returned abstract code is as expected. ... ok | |
| Test integration for a simple model with several state variables. ... ok | |
| brian2.tests.test_stateupdaters.test_illegal_calls ... ok | |
| brian2.tests.test_stateupdaters.test_priority ... ok | |
| Test state updater registration. ... ok | |
| Test the determination of suitable state updaters. ... WARNING The 'independent' state updater is deprecated and might be removed in future versions of Brian. [brian2.stateupdaters.exact.deprecated_independent] | |
| ok | |
| brian2.tests.test_stateupdaters.test_locally_constant_check ... ok | |
| Test the string representation of a subgroup. ... ok | |
| brian2.tests.test_subgroup.test_state_variables_group_as_index ... ok | |
| brian2.tests.test_subgroup.test_state_variables_group_as_index_problematic ... ok | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups_problematic ... ok | |
| brian2.tests.test_subgroup.test_wrong_indexing ... ok | |
| A basic test that creating a Synapses object works. ... ok | |
| brian2.tests.test_synapses.test_creation_errors ... ok | |
| brian2.tests.test_synapses.test_name_clashes ... ok | |
| brian2.tests.test_synapses.test_equations_unit_check ... ok | |
| brian2.tests.test_synapses.test_pre_before_post ... ok | |
| brian2.tests.test_synapses.test_invalid_custom_event ... ok | |
| Make sure that a `Synapse` object uses the correct clocks. ... ok | |
| brian2.tests.test_synapses.test_no_synapses ... ok | |
| brian2.tests.test_synapses.test_no_synapses_variable_write ... ok | |
| brian2.tests.test_synapses.test_multiple_summed_variables ... ok | |
| brian2.tests.test_synapses.test_summed_variables_overlapping_subgroups ... ok | |
| brian2.tests.test_synapses.test_summed_variables_linked_variables ... ok | |
| brian2.tests.test_synapses.test_repr ... ok | |
| brian2.tests.test_synapses.test_pre_post_variables ... ok | |
| brian2.tests.test_synapses.test_variables_by_owner ... ok | |
| brian2.tests.test_synapses.test_permutation_analysis ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_syntax ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_range_noint ... ok | |
| brian2.tests.test_templates.test_templates ... ok | |
| brian2.tests.test_timedarray.test_timedarray_direct_use ... ok | |
| brian2.tests.test_timedarray.test_timedarray_incorrect_use ... ok | |
| Test the construction of quantity objects ... ok | |
| Test various ways of getting/comparing the dimensions of a quantity. ... ok | |
| Test displaying a quantity in different units ... ok | |
| brian2.tests.test_units.test_scale ... ok | |
| Test pickling of units. ... ok | |
| Test that str representations do not raise any errors and that repr ... ok | |
| brian2.tests.test_units.test_slicing ... ok | |
| brian2.tests.test_units.test_setting ... ok | |
| brian2.tests.test_units.test_multiplication_division ... ok | |
| brian2.tests.test_units.test_addition_subtraction ... ok | |
| brian2.tests.test_units.test_unary_operations ... ok | |
| Test whether binary operations work when they should and raise ... ok | |
| Test raising quantities to a power. ... ok | |
| brian2.tests.test_units.test_inplace_operations ... ok | |
| Test functions that discard units. ... ok | |
| Test the unitsafe functions wrapping their numpy counterparts. ... ok | |
| Test a couple of functions/methods that need special treatment. ... ok | |
| brian2.tests.test_units.test_numpy_functions_same_dimensions ... ok | |
| Check numpy functions that return indices. ... ok | |
| Test that numpy functions that should work on dimensionless quantities only ... ok | |
| Test some numpy functions that change the dimensions of the quantity. ... ok | |
| Assures that certain numpy functions raise a TypeError when called on ... ok | |
| Assure that logical numpy functions work on all quantities and return ... ok | |
| brian2.tests.test_units.test_arange_linspace ... ok | |
| Test converting to and from a list. ... ok | |
| Test the check_units decorator ... ok | |
| Test get_unit ... ok | |
| brian2.tests.test_units.test_get_best_unit ... ok | |
| Check switching off unit checks (used for external functions). ... ok | |
| Test the fail_for_dimension_mismatch function. ... ok | |
| brian2.tests.test_units.test_deepcopy ... ok | |
| brian2.tests.test_units.test_inplace_on_scalars ... ok | |
| brian2.tests.test_units.test_all_units_list ... ok | |
| brian2.tests.test_units.test_constants ... ok | |
| Test information about the environment we are running under. ... ok | |
| brian2.tests.test_utils.test_spell_check ... ok | |
| brian2.tests.test_variables.test_construction_errors ... ok | |
| brian2.tests.test_variables.test_str_repr ... ok | |
| brian2.tests.test_variables.test_dtype_str ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 347 tests in 52.712s | |
| OK (SKIP=2) | |
| Running tests for target numpy: | |
| brian2.tests.test_GSL.test_GSL_default_function ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_method_options_synapses ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_refractory ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_save_step_count ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_x_variable ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_codegen.test_clear_cache_numpy ... ok | |
| brian2.tests.test_codegen.test_clear_cache_weave ... SKIP: weave-only test | |
| brian2.tests.test_codegen.test_clear_cache_cython ... SKIP: Cython-only test | |
| brian2.tests.test_complex_examples.test_cuba ... ok | |
| Make sure that symbolic constants use the correct values in code ... ok | |
| Test that math functions give the same result, regardless of whether used ... ok | |
| brian2.tests.test_functions.test_clip ... ok | |
| brian2.tests.test_functions.test_bool_to_int ... ok | |
| brian2.tests.test_functions.test_timestep_function_during_run ... ok | |
| brian2.tests.test_functions.test_user_defined_function ... ok | |
| Test the preparation of functions for use in code with check_units. ... ok | |
| brian2.tests.test_functions.test_simple_user_defined_function ... ok | |
| brian2.tests.test_functions.test_manual_user_defined_function ... ok | |
| brian2.tests.test_functions.test_manual_user_defined_function_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_cython ... SKIP: cython-only test | |
| brian2.tests.test_functions.test_function_dependencies_numpy ... ok | |
| brian2.tests.test_functions.test_binomial ... ok | |
| brian2.tests.test_functions.test_declare_types ... ok | |
| brian2.tests.test_functions.test_multiple_stateless_function_calls ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_bug_824 ... ok | |
| brian2.tests.test_monitor.test_event_monitor ... ok | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... ok | |
| brian2.tests.test_monitor.test_spike_trains ... ok | |
| brian2.tests.test_monitor.test_synapses_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_state_monitor_resize ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... ok | |
| brian2.tests.test_morphology.test_tree_cables_from_swc ... ok | |
| Somewhat realistic test with a loop of magic networks ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_profile ... ok | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... ok | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... ok | |
| brian2.tests.test_network.test_multiple_runs_function_change ... ok | |
| Test that a NeuronGroup with a stochastic variable can be simulated. Only ... ok | |
| Test that a NeuronGroup with multiplicative noise can be simulated. Only ... ok | |
| Test the correct handling of scalar variables ... ok | |
| Test the correct handling of referred scalar variables in subexpressions ... ok | |
| Test correct uses of linked variables. ... ok | |
| Test linked variable from a size 1 group. ... ok | |
| Test a subexpression referring to a linked variable. ... ok | |
| Test a linked variable referring to a subexpression without indices ... ok | |
| Test a linked variable referring to a subexpression with indices ... ok | |
| Test a complicated setup (not unlikely when using brian hears) ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 ... ok | |
| Test that threshold and reset work in the expected way. ... ok | |
| brian2.tests.test_neurongroup.test_custom_events_schedule ... ok | |
| Test the setting and accessing of state variables. ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_access_strings ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_set_strings ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_constant_variable_subexpression ... ok | |
| Test an issue around variables aliasing other variables (#259) ... ok | |
| brian2.tests.test_neurongroup.test_random_vector_values ... ok | |
| brian2.tests.test_neurongroup.test_random_values_random_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_and_random ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_scheduling ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_dt ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floor_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floating_point_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_mod ... ok | |
| brian2.tests.test_numpy_codegen.test_error_message ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_cpp ... SKIP: weave-only test | |
| brian2.tests.test_poissongroup.test_single_rates ... ok | |
| brian2.tests.test_poissongroup.test_rate_arrays ... ok | |
| brian2.tests.test_poissongroup.test_time_dependent_rate ... ok | |
| brian2.tests.test_poissongroup.test_propagation ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_subgroup ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput_refractory ... ok | |
| brian2.tests.test_refractory.test_refractoriness_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_variables ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated_legacy ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold ... ok | |
| brian2.tests.test_refractory.test_conditional_write_behaviour ... ok | |
| brian2.tests.test_refractory.test_conditional_write_automatic_and_manual ... ok | |
| Test simulation of an infinite cable vs. theory for current pulse (Green function) ... ok | |
| Test simulation of short cylinder vs. theory for constant current. ... SKIP: Need double precision for this test | |
| Rallpack 1 ... SKIP: Need double precision for this test | |
| Rallpack 2 ... SKIP: Need double precision for this test | |
| Rallpack 3 ... SKIP: Need double precision for this test | |
| Test simulation of a cylinder plus two branches, with diameters according to Rall's formula ... SKIP: Need double precision for this test | |
| brian2.tests.test_spatialneuron.test_basic_diffusion ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_capacitive_currents ... SKIP: Need double precision for this test | |
| Test that `SpikeGeneratorGroup` connects properly. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_change_spikes ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_extended ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_deterministic_noise ... ok | |
| brian2.tests.test_stateupdaters.test_pure_noise_deterministic ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| brian2.tests.test_stateupdaters.test_refractory ... WARNING The 'independent' state updater is deprecated and might be removed in future versions of Brian. [brian2.stateupdaters.exact.deprecated_independent] | |
| ok | |
| brian2.tests.test_stateupdaters.test_refractory_stochastic ... ok | |
| brian2.tests.test_stateupdaters.test_check_for_invalid_values_linear_integrator ... ok | |
| Test the setting and accessing of state variables in subgroups. ... ok | |
| brian2.tests.test_subgroup.test_state_variables_simple ... ok | |
| Test accessing subgroups with string indices. ... ok | |
| brian2.tests.test_subgroup.test_state_monitor ... ok | |
| Make sure that shared variables work with subgroups ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_state_vars ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_random ... ok | |
| brian2.tests.test_subgroup.test_synapse_access ... ok | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups ... ok | |
| brian2.tests.test_subgroup.test_subgroup_summed_variable ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| Assure that subexpressions are handled correctly, even ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation_2 ... ok | |
| brian2.tests.test_subgroup.test_run_regularly ... ok | |
| brian2.tests.test_subgroup.test_spike_monitor ... ok | |
| Using subgroups without keeping an explicit reference. Basic access. ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Synapses ... ok | |
| Create a subgroup of a subgroup ... ok | |
| Test the count of outgoing/incoming synapses per neuron. ... ok | |
| Test connecting synapses with explictly given arrays ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_custom ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition_2 ... ok | |
| Test random connections. ... ok | |
| brian2.tests.test_synapses.test_connection_random_without_condition ... ok | |
| Test multiple synapses per connection. ... ok | |
| Assign values to state variables in various ways ... ok | |
| brian2.tests.test_synapses.test_state_variable_indexing ... ok | |
| brian2.tests.test_synapses.test_indices ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_delay_specification ... ok | |
| brian2.tests.test_synapses.test_delays_pathways ... ok | |
| brian2.tests.test_synapses.test_delays_pathways_subgroups ... ok | |
| brian2.tests.test_synapses.test_pre_post_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_custom_event ... ok | |
| brian2.tests.test_synapses.test_transmission ... ok | |
| brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks ... ok | |
| brian2.tests.test_synapses.test_transmission_boolean_variable ... ok | |
| brian2.tests.test_synapses.test_changed_dt_spikes_in_queue ... ok | |
| brian2.tests.test_synapses.test_summed_variable ... ok | |
| brian2.tests.test_synapses.test_summed_variable_pre_and_post ... ok | |
| brian2.tests.test_synapses.test_summed_variable_differing_group_size ... ok | |
| brian2.tests.test_synapses.test_summed_variable_errors ... ok | |
| brian2.tests.test_synapses.test_summed_variables_subgroups ... ok | |
| brian2.tests.test_synapses.test_scalar_parameter_access ... ok | |
| brian2.tests.test_synapses.test_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_constant_subexpression ... ok | |
| brian2.tests.test_synapses.test_external_variables ... ok | |
| brian2.tests.test_synapses.test_event_driven ... ok | |
| brian2.tests.test_synapses.test_vectorisation ... ok | |
| brian2.tests.test_synapses.test_vectorisation_STDP_like ... SKIP: Need double precision for this test | |
| brian2.tests.test_synapses.test_synaptic_equations ... ok | |
| brian2.tests.test_synapses.test_synapse_with_run_regularly ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes ... ok | |
| brian2.tests.test_synapses.test_ufunc_at_vectorisation ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic_2 ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory_rand ... ok | |
| brian2.tests.test_thresholder.test_simple_threshold ... ok | |
| brian2.tests.test_thresholder.test_scalar_threshold ... ok | |
| brian2.tests.test_timedarray.test_timedarray_semantics ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_with_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_2d ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_upsampling ... ok | |
| Use a very long timedarray (with a big dt), where the upsampling can lead ... ok | |
| brian2.tests.test_timedarray.test_timedarray_repeated_use ... ok | |
| brian2.tests.test_units.test_units_vs_quantities ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 239 tests in 572.850s | |
| OK (SKIP=31) | |
| Running tests for target weave: | |
| brian2.tests.test_GSL.test_GSL_default_function ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| ok | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... ok | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... ok | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_synapses ... ok | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... ok | |
| brian2.tests.test_GSL.test_GSL_refractory ... ok | |
| brian2.tests.test_GSL.test_GSL_save_step_count ... ok | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... ok | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... ok | |
| brian2.tests.test_GSL.test_GSL_x_variable ... ok | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_codegen.test_clear_cache_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_codegen.test_clear_cache_weave ... ok | |
| brian2.tests.test_codegen.test_clear_cache_cython ... SKIP: Cython-only test | |
| brian2.tests.test_complex_examples.test_cuba ... ok | |
| Make sure that symbolic constants use the correct values in code ... ok | |
| Test that math functions give the same result, regardless of whether used ... ok | |
| brian2.tests.test_functions.test_clip ... ok | |
| brian2.tests.test_functions.test_bool_to_int ... ok | |
| brian2.tests.test_functions.test_timestep_function_during_run ... ok | |
| brian2.tests.test_functions.test_user_defined_function ... ok | |
| Test the preparation of functions for use in code with check_units. ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_simple_user_defined_function ... ok | |
| brian2.tests.test_functions.test_manual_user_defined_function ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_manual_user_defined_function_weave ... ok | |
| brian2.tests.test_functions.test_function_dependencies_weave ... ok | |
| brian2.tests.test_functions.test_function_dependencies_cython ... SKIP: cython-only test | |
| brian2.tests.test_functions.test_function_dependencies_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_binomial ... ok | |
| brian2.tests.test_functions.test_declare_types ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_multiple_stateless_function_calls ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_bug_824 ... SKIP: numpy-only test | |
| brian2.tests.test_monitor.test_event_monitor ... ok | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... ok | |
| brian2.tests.test_monitor.test_spike_trains ... ok | |
| brian2.tests.test_monitor.test_synapses_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_state_monitor_resize ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... ok | |
| brian2.tests.test_morphology.test_tree_cables_from_swc ... ok | |
| Somewhat realistic test with a loop of magic networks ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_profile ... ok | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... ok | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... ok | |
| brian2.tests.test_network.test_multiple_runs_function_change ... ok | |
| Test that a NeuronGroup with a stochastic variable can be simulated. Only ... ok | |
| Test that a NeuronGroup with multiplicative noise can be simulated. Only ... ok | |
| Test the correct handling of scalar variables ... ok | |
| Test the correct handling of referred scalar variables in subexpressions ... ok | |
| Test correct uses of linked variables. ... ok | |
| Test linked variable from a size 1 group. ... ok | |
| Test a subexpression referring to a linked variable. ... ok | |
| Test a linked variable referring to a subexpression without indices ... ok | |
| Test a linked variable referring to a subexpression with indices ... ok | |
| Test a complicated setup (not unlikely when using brian hears) ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 ... ok | |
| Test that threshold and reset work in the expected way. ... ok | |
| brian2.tests.test_neurongroup.test_custom_events_schedule ... ok | |
| Test the setting and accessing of state variables. ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_access_strings ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_set_strings ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_constant_variable_subexpression ... ok | |
| Test an issue around variables aliasing other variables (#259) ... SKIP: numpy-only test | |
| brian2.tests.test_neurongroup.test_random_vector_values ... ok | |
| brian2.tests.test_neurongroup.test_random_values_random_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_and_random ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_scheduling ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_dt ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floor_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floating_point_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_mod ... ok | |
| brian2.tests.test_numpy_codegen.test_error_message ... SKIP: numpy-only test | |
| brian2.tests.test_parsing.test_parse_expressions_cpp ... ok | |
| brian2.tests.test_poissongroup.test_single_rates ... ok | |
| brian2.tests.test_poissongroup.test_rate_arrays ... ok | |
| brian2.tests.test_poissongroup.test_time_dependent_rate ... ok | |
| brian2.tests.test_poissongroup.test_propagation ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_subgroup ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput_refractory ... ok | |
| brian2.tests.test_refractory.test_refractoriness_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_variables ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated_legacy ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold ... ok | |
| brian2.tests.test_refractory.test_conditional_write_behaviour ... ok | |
| brian2.tests.test_refractory.test_conditional_write_automatic_and_manual ... ok | |
| Test simulation of an infinite cable vs. theory for current pulse (Green function) ... ok | |
| Test simulation of short cylinder vs. theory for constant current. ... SKIP: Need double precision for this test | |
| Rallpack 1 ... SKIP: Need double precision for this test | |
| Rallpack 2 ... SKIP: Need double precision for this test | |
| Rallpack 3 ... SKIP: Need double precision for this test | |
| Test simulation of a cylinder plus two branches, with diameters according to Rall's formula ... SKIP: Need double precision for this test | |
| brian2.tests.test_spatialneuron.test_basic_diffusion ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_capacitive_currents ... SKIP: Need double precision for this test | |
| Test that `SpikeGeneratorGroup` connects properly. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_change_spikes ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_extended ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_deterministic_noise ... ok | |
| brian2.tests.test_stateupdaters.test_pure_noise_deterministic ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| brian2.tests.test_stateupdaters.test_refractory ... ok | |
| brian2.tests.test_stateupdaters.test_refractory_stochastic ... ok | |
| brian2.tests.test_stateupdaters.test_check_for_invalid_values_linear_integrator ... ok | |
| Test the setting and accessing of state variables in subgroups. ... ok | |
| brian2.tests.test_subgroup.test_state_variables_simple ... ok | |
| Test accessing subgroups with string indices. ... ok | |
| brian2.tests.test_subgroup.test_state_monitor ... ok | |
| Make sure that shared variables work with subgroups ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_state_vars ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_random ... ok | |
| brian2.tests.test_subgroup.test_synapse_access ... ok | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups ... ok | |
| brian2.tests.test_subgroup.test_subgroup_summed_variable ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| Assure that subexpressions are handled correctly, even ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation_2 ... ok | |
| brian2.tests.test_subgroup.test_run_regularly ... ok | |
| brian2.tests.test_subgroup.test_spike_monitor ... ok | |
| Using subgroups without keeping an explicit reference. Basic access. ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Synapses ... ok | |
| Create a subgroup of a subgroup ... ok | |
| Test the count of outgoing/incoming synapses per neuron. ... ok | |
| Test connecting synapses with explictly given arrays ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_custom ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition_2 ... ok | |
| Test random connections. ... ok | |
| brian2.tests.test_synapses.test_connection_random_without_condition ... ok | |
| Test multiple synapses per connection. ... ok | |
| Assign values to state variables in various ways ... ok | |
| brian2.tests.test_synapses.test_state_variable_indexing ... ok | |
| brian2.tests.test_synapses.test_indices ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_delay_specification ... ok | |
| brian2.tests.test_synapses.test_delays_pathways ... ok | |
| brian2.tests.test_synapses.test_delays_pathways_subgroups ... ok | |
| brian2.tests.test_synapses.test_pre_post_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_custom_event ... ok | |
| brian2.tests.test_synapses.test_transmission ... ok | |
| brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks ... ok | |
| brian2.tests.test_synapses.test_transmission_boolean_variable ... ok | |
| brian2.tests.test_synapses.test_changed_dt_spikes_in_queue ... ok | |
| brian2.tests.test_synapses.test_summed_variable ... ok | |
| brian2.tests.test_synapses.test_summed_variable_pre_and_post ... ok | |
| brian2.tests.test_synapses.test_summed_variable_differing_group_size ... ok | |
| brian2.tests.test_synapses.test_summed_variable_errors ... ok | |
| brian2.tests.test_synapses.test_summed_variables_subgroups ... ok | |
| brian2.tests.test_synapses.test_scalar_parameter_access ... ok | |
| brian2.tests.test_synapses.test_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_constant_subexpression ... ok | |
| brian2.tests.test_synapses.test_external_variables ... ok | |
| brian2.tests.test_synapses.test_event_driven ... ok | |
| brian2.tests.test_synapses.test_vectorisation ... ok | |
| brian2.tests.test_synapses.test_vectorisation_STDP_like ... SKIP: Need double precision for this test | |
| brian2.tests.test_synapses.test_synaptic_equations ... ok | |
| brian2.tests.test_synapses.test_synapse_with_run_regularly ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes ... ok | |
| brian2.tests.test_synapses.test_ufunc_at_vectorisation ... SKIP: numpy-only test | |
| brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic_2 ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory_rand ... ok | |
| brian2.tests.test_thresholder.test_simple_threshold ... ok | |
| brian2.tests.test_thresholder.test_scalar_threshold ... ok | |
| brian2.tests.test_timedarray.test_timedarray_semantics ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_with_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_2d ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_upsampling ... ok | |
| Use a very long timedarray (with a big dt), where the upsampling can lead ... ok | |
| brian2.tests.test_timedarray.test_timedarray_repeated_use ... ok | |
| brian2.tests.test_units.test_units_vs_quantities ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 239 tests in 331.690s | |
| OK (SKIP=18) | |
| Running tests for target cython: | |
| brian2.tests.test_GSL.test_GSL_default_function ... ok | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| ok | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... ok | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_synapses ... ok | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... ok | |
| brian2.tests.test_GSL.test_GSL_refractory ... ok | |
| brian2.tests.test_GSL.test_GSL_save_step_count ... ok | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... ok | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... ok | |
| brian2.tests.test_GSL.test_GSL_x_variable ... ok | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_codegen.test_clear_cache_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_codegen.test_clear_cache_weave ... SKIP: weave-only test | |
| brian2.tests.test_codegen.test_clear_cache_cython ... ok | |
| brian2.tests.test_complex_examples.test_cuba ... ok | |
| Make sure that symbolic constants use the correct values in code ... ok | |
| Test that math functions give the same result, regardless of whether used ... ok | |
| brian2.tests.test_functions.test_clip ... ok | |
| brian2.tests.test_functions.test_bool_to_int ... ok | |
| brian2.tests.test_functions.test_timestep_function_during_run ... ok | |
| brian2.tests.test_functions.test_user_defined_function ... ok | |
| Test the preparation of functions for use in code with check_units. ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_simple_user_defined_function ... ok | |
| brian2.tests.test_functions.test_manual_user_defined_function ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_manual_user_defined_function_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_cython ... ok | |
| brian2.tests.test_functions.test_function_dependencies_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_binomial ... ok | |
| brian2.tests.test_functions.test_declare_types ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_multiple_stateless_function_calls ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_bug_824 ... SKIP: numpy-only test | |
| brian2.tests.test_monitor.test_event_monitor ... ok | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... ok | |
| brian2.tests.test_monitor.test_spike_trains ... ok | |
| brian2.tests.test_monitor.test_synapses_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_state_monitor_resize ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... ok | |
| brian2.tests.test_morphology.test_tree_cables_from_swc ... ok | |
| Somewhat realistic test with a loop of magic networks ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_profile ... ok | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... ok | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... ok | |
| brian2.tests.test_network.test_multiple_runs_function_change ... ok | |
| Test that a NeuronGroup with a stochastic variable can be simulated. Only ... ok | |
| Test that a NeuronGroup with multiplicative noise can be simulated. Only ... ok | |
| Test the correct handling of scalar variables ... ok | |
| Test the correct handling of referred scalar variables in subexpressions ... ok | |
| Test correct uses of linked variables. ... ok | |
| Test linked variable from a size 1 group. ... ok | |
| Test a subexpression referring to a linked variable. ... ok | |
| Test a linked variable referring to a subexpression without indices ... ok | |
| Test a linked variable referring to a subexpression with indices ... ok | |
| Test a complicated setup (not unlikely when using brian hears) ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 ... ok | |
| Test that threshold and reset work in the expected way. ... ok | |
| brian2.tests.test_neurongroup.test_custom_events_schedule ... ok | |
| Test the setting and accessing of state variables. ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_access_strings ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_set_strings ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_constant_variable_subexpression ... ok | |
| Test an issue around variables aliasing other variables (#259) ... SKIP: numpy-only test | |
| brian2.tests.test_neurongroup.test_random_vector_values ... ok | |
| brian2.tests.test_neurongroup.test_random_values_random_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_and_random ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_scheduling ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_dt ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floor_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floating_point_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_mod ... ok | |
| brian2.tests.test_numpy_codegen.test_error_message ... SKIP: numpy-only test | |
| brian2.tests.test_parsing.test_parse_expressions_cpp ... SKIP: weave-only test | |
| brian2.tests.test_poissongroup.test_single_rates ... ok | |
| brian2.tests.test_poissongroup.test_rate_arrays ... ok | |
| brian2.tests.test_poissongroup.test_time_dependent_rate ... ok | |
| brian2.tests.test_poissongroup.test_propagation ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_subgroup ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput_refractory ... ok | |
| brian2.tests.test_refractory.test_refractoriness_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_variables ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated_legacy ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold ... ok | |
| brian2.tests.test_refractory.test_conditional_write_behaviour ... ok | |
| brian2.tests.test_refractory.test_conditional_write_automatic_and_manual ... ok | |
| Test simulation of an infinite cable vs. theory for current pulse (Green function) ... ok | |
| Test simulation of short cylinder vs. theory for constant current. ... SKIP: Need double precision for this test | |
| Rallpack 1 ... SKIP: Need double precision for this test | |
| Rallpack 2 ... SKIP: Need double precision for this test | |
| Rallpack 3 ... SKIP: Need double precision for this test | |
| Test simulation of a cylinder plus two branches, with diameters according to Rall's formula ... SKIP: Need double precision for this test | |
| brian2.tests.test_spatialneuron.test_basic_diffusion ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_capacitive_currents ... SKIP: Need double precision for this test | |
| Test that `SpikeGeneratorGroup` connects properly. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_change_spikes ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_extended ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_deterministic_noise ... ok | |
| brian2.tests.test_stateupdaters.test_pure_noise_deterministic ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| brian2.tests.test_stateupdaters.test_refractory ... WARNING The 'independent' state updater is deprecated and might be removed in future versions of Brian. [brian2.stateupdaters.exact.deprecated_independent] | |
| ok | |
| brian2.tests.test_stateupdaters.test_refractory_stochastic ... ok | |
| brian2.tests.test_stateupdaters.test_check_for_invalid_values_linear_integrator ... ok | |
| Test the setting and accessing of state variables in subgroups. ... ok | |
| brian2.tests.test_subgroup.test_state_variables_simple ... ok | |
| Test accessing subgroups with string indices. ... ok | |
| brian2.tests.test_subgroup.test_state_monitor ... ok | |
| Make sure that shared variables work with subgroups ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_state_vars ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_random ... ok | |
| brian2.tests.test_subgroup.test_synapse_access ... ok | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups ... ok | |
| brian2.tests.test_subgroup.test_subgroup_summed_variable ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| Assure that subexpressions are handled correctly, even ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation_2 ... ok | |
| brian2.tests.test_subgroup.test_run_regularly ... ok | |
| brian2.tests.test_subgroup.test_spike_monitor ... ok | |
| Using subgroups without keeping an explicit reference. Basic access. ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Synapses ... ok | |
| Create a subgroup of a subgroup ... ok | |
| Test the count of outgoing/incoming synapses per neuron. ... ok | |
| Test connecting synapses with explictly given arrays ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_custom ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition_2 ... ok | |
| Test random connections. ... ok | |
| brian2.tests.test_synapses.test_connection_random_without_condition ... ok | |
| Test multiple synapses per connection. ... ok | |
| Assign values to state variables in various ways ... ok | |
| brian2.tests.test_synapses.test_state_variable_indexing ... ok | |
| brian2.tests.test_synapses.test_indices ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_delay_specification ... ok | |
| brian2.tests.test_synapses.test_delays_pathways ... ok | |
| brian2.tests.test_synapses.test_delays_pathways_subgroups ... ok | |
| brian2.tests.test_synapses.test_pre_post_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_custom_event ... ok | |
| brian2.tests.test_synapses.test_transmission ... ok | |
| brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks ... ok | |
| brian2.tests.test_synapses.test_transmission_boolean_variable ... ok | |
| brian2.tests.test_synapses.test_changed_dt_spikes_in_queue ... ok | |
| brian2.tests.test_synapses.test_summed_variable ... ok | |
| brian2.tests.test_synapses.test_summed_variable_pre_and_post ... ok | |
| brian2.tests.test_synapses.test_summed_variable_differing_group_size ... ok | |
| brian2.tests.test_synapses.test_summed_variable_errors ... ok | |
| brian2.tests.test_synapses.test_summed_variables_subgroups ... ok | |
| brian2.tests.test_synapses.test_scalar_parameter_access ... ok | |
| brian2.tests.test_synapses.test_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_constant_subexpression ... ok | |
| brian2.tests.test_synapses.test_external_variables ... ok | |
| brian2.tests.test_synapses.test_event_driven ... ok | |
| brian2.tests.test_synapses.test_vectorisation ... ok | |
| brian2.tests.test_synapses.test_vectorisation_STDP_like ... SKIP: Need double precision for this test | |
| brian2.tests.test_synapses.test_synaptic_equations ... ok | |
| brian2.tests.test_synapses.test_synapse_with_run_regularly ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes ... ok | |
| brian2.tests.test_synapses.test_ufunc_at_vectorisation ... SKIP: numpy-only test | |
| brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic_2 ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory_rand ... ok | |
| brian2.tests.test_thresholder.test_simple_threshold ... ok | |
| brian2.tests.test_thresholder.test_scalar_threshold ... ok | |
| brian2.tests.test_timedarray.test_timedarray_semantics ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_with_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_2d ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_upsampling ... ok | |
| Use a very long timedarray (with a big dt), where the upsampling can lead ... ok | |
| brian2.tests.test_timedarray.test_timedarray_repeated_use ... ok | |
| brian2.tests.test_units.test_units_vs_quantities ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 239 tests in 395.993s | |
| OK (SKIP=20) | |
| Testing standalone device "cpp_standalone" | |
| Running standalone-compatible standard tests (single run statement) | |
| brian2.tests.test_GSL.test_GSL_default_function ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| ok | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... ok | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... ok | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... ok | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... ok | |
| brian2.tests.test_GSL.test_GSL_refractory ... ok | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... ok | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... ok | |
| brian2.tests.test_GSL.test_GSL_x_variable ... ok | |
| brian2.tests.test_complex_examples.test_cuba ... ok | |
| Make sure that symbolic constants use the correct values in code ... ok | |
| brian2.tests.test_functions.test_clip ... ok | |
| brian2.tests.test_functions.test_bool_to_int ... ok | |
| brian2.tests.test_functions.test_timestep_function_during_run ... ok | |
| brian2.tests.test_functions.test_user_defined_function ... ok | |
| brian2.tests.test_functions.test_binomial ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_event_monitor ... ok | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... ok | |
| brian2.tests.test_monitor.test_spike_trains ... ok | |
| brian2.tests.test_monitor.test_state_monitor ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... ok | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_state_monitor_resize ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... ok | |
| brian2.tests.test_network.test_profile ... ok | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... ok | |
| Test that a NeuronGroup with a stochastic variable can be simulated. Only ... ok | |
| Test that a NeuronGroup with multiplicative noise can be simulated. Only ... ok | |
| Test the correct handling of referred scalar variables in subexpressions ... ok | |
| Test correct uses of linked variables. ... ok | |
| Test linked variable from a size 1 group. ... ok | |
| Test a subexpression referring to a linked variable. ... ok | |
| Test a linked variable referring to a subexpression without indices ... ok | |
| Test a linked variable referring to a subexpression with indices ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 ... ok | |
| Test that threshold and reset work in the expected way. ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_set_strings ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_constant_variable_subexpression ... ok | |
| brian2.tests.test_neurongroup.test_random_values_random_seed ... ok | |
| brian2.tests.test_neurongroup.test_random_values_fixed_seed ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_scheduling ... ok | |
| brian2.tests.test_neurongroup.test_run_regularly_dt ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floor_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_floating_point_division ... ok | |
| brian2.tests.test_neurongroup.test_semantics_mod ... ok | |
| brian2.tests.test_poissongroup.test_single_rates ... ok | |
| brian2.tests.test_poissongroup.test_rate_arrays ... ok | |
| brian2.tests.test_poissongroup.test_time_dependent_rate ... ok | |
| brian2.tests.test_poissongroup.test_propagation ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_subgroup ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput ... ok | |
| brian2.tests.test_poissoninput.test_poissoninput_refractory ... ok | |
| brian2.tests.test_refractory.test_refractoriness_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_variables ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold_basic ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated ... ok | |
| brian2.tests.test_refractory.test_refractoriness_repeated_legacy ... ok | |
| brian2.tests.test_refractory.test_refractoriness_threshold ... ok | |
| brian2.tests.test_refractory.test_conditional_write_behaviour ... ok | |
| brian2.tests.test_refractory.test_conditional_write_automatic_and_manual ... ok | |
| Test simulation of short cylinder vs. theory for constant current. ... SKIP: Need double precision for this test | |
| Rallpack 1 ... SKIP: Need double precision for this test | |
| Rallpack 2 ... SKIP: Need double precision for this test | |
| Rallpack 3 ... SKIP: Need double precision for this test | |
| Test simulation of a cylinder plus two branches, with diameters according to Rall's formula ... SKIP: Need double precision for this test | |
| brian2.tests.test_spatialneuron.test_basic_diffusion ... ok | |
| Test that `SpikeGeneratorGroup` connects properly. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period ... ok | |
| Make sure that the integration of a (non-stochastic) differential equation ... ok | |
| brian2.tests.test_stateupdaters.test_check_for_invalid_values_linear_integrator ... ok | |
| brian2.tests.test_subgroup.test_state_variables_simple ... ok | |
| brian2.tests.test_subgroup.test_state_monitor ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_state_vars ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_random ... ok | |
| brian2.tests.test_subgroup.test_subgroup_summed_variable ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation ... ok | |
| brian2.tests.test_subgroup.test_synaptic_propagation_2 ... ok | |
| brian2.tests.test_subgroup.test_run_regularly ... ok | |
| brian2.tests.test_subgroup.test_spike_monitor ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... ok | |
| Using subgroups without keeping an explicit reference. Synapses ... ok | |
| Test the count of outgoing/incoming synapses per neuron. ... ok | |
| Test connecting synapses with explictly given arrays ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_custom ... ok | |
| brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_connection_random_with_condition_2 ... ok | |
| Test random connections. ... ok | |
| brian2.tests.test_synapses.test_connection_random_without_condition ... ok | |
| Test multiple synapses per connection. ... ok | |
| brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses ... ok | |
| Assure that subexpressions in targeted groups are handled correctly. ... ok | |
| brian2.tests.test_synapses.test_pre_post_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_simple ... ok | |
| brian2.tests.test_synapses.test_transmission_custom_event ... ok | |
| brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay ... ok | |
| brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks ... ok | |
| brian2.tests.test_synapses.test_transmission_boolean_variable ... ok | |
| brian2.tests.test_synapses.test_summed_variable ... ok | |
| brian2.tests.test_synapses.test_summed_variable_pre_and_post ... ok | |
| brian2.tests.test_synapses.test_summed_variable_differing_group_size ... ok | |
| brian2.tests.test_synapses.test_summed_variables_subgroups ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_variable ... ok | |
| brian2.tests.test_synapses.test_sim_with_scalar_subexpression ... ok | |
| brian2.tests.test_synapses.test_sim_with_constant_subexpression ... ok | |
| brian2.tests.test_synapses.test_external_variables ... ok | |
| brian2.tests.test_synapses.test_event_driven ... ok | |
| brian2.tests.test_synapses.test_vectorisation ... ok | |
| brian2.tests.test_synapses.test_vectorisation_STDP_like ... SKIP: Need double precision for this test | |
| brian2.tests.test_synapses.test_synaptic_equations ... ok | |
| brian2.tests.test_synapses.test_synapse_with_run_regularly ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes ... ok | |
| brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic_2 ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory ... ok | |
| brian2.tests.test_synapses.test_synapses_refractory_rand ... ok | |
| brian2.tests.test_thresholder.test_simple_threshold ... ok | |
| brian2.tests.test_thresholder.test_scalar_threshold ... ok | |
| brian2.tests.test_timedarray.test_timedarray_semantics ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_with_units ... ok | |
| brian2.tests.test_timedarray.test_timedarray_2d ... ok | |
| brian2.tests.test_timedarray.test_timedarray_no_upsampling ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 164 tests in 1304.805s | |
| OK (SKIP=6) | |
| Running standalone-compatible standard tests (multiple run statements) | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... ok | |
| brian2.tests.test_network.test_multiple_runs_function_change ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_capacitive_currents ... SKIP: Need double precision for this test | |
| brian2.tests.test_spikegenerator.test_spikegenerator_change_spikes ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 11 tests in 56.014s | |
| OK (SKIP=1) | |
| Running standalone-specific tests | |
| brian2.tests.test_cpp_standalone.test_cpp_standalone ... ok | |
| brian2.tests.test_cpp_standalone.test_multiple_connects ... ok | |
| brian2.tests.test_cpp_standalone.test_storing_loading ... ok | |
| brian2.tests.test_cpp_standalone.test_duplicate_names_across_nets ... ok | |
| brian2.tests.test_cpp_standalone.test_time_after_run ... ok | |
| brian2.tests.test_cpp_standalone.test_array_cache ... ok | |
| brian2.tests.test_cpp_standalone.test_run_with_debug ... Number of spikes: 0 | |
| Number of synapses: 1 | |
| ok | |
| brian2.tests.test_cpp_standalone.test_changing_profile_arg ... ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_incorrect ... ok | |
| ---------------------------------------------------------------------- | |
| Ran 9 tests in 48.139s | |
| OK | |
| OK: 7/7 test suite(s) did complete successfully. | |
| Running tests in D:\programming\brian2\brian2 for targets numpy, weave, cython (including long tests) | |
| Testing standalone | |
| Testing codegen-independent code | |
| Resetting to default preferences | |
| Setting dtype for floating point variables to: float64 | |
| Running tests that do not use code generation | |
| Doctest: brian2.codegen.optimisation.reduced_node ... ok | |
| Doctest: brian2.codegen.runtime.numpy_rt.numpy_rt.LazyArange ... ok | |
| Doctest: brian2.core.clocks.check_dt ... ok | |
| Doctest: brian2.core.network._format_time ... ok | |
| Doctest: brian2.core.operations.network_operation ... ok | |
| Doctest: brian2.core.preferences.parse_preference_name ... ok | |
| Doctest: brian2.core.variables.linked_var ... ok | |
| Doctest: brian2.input.timedarray.TimedArray ... ok | |
| Doctest: brian2.memory.dynamicarray.DynamicArray ... ok | |
| Doctest: brian2.monitors.spikemonitor.EventMonitor.all_values ... ok | |
| Doctest: brian2.monitors.spikemonitor.EventMonitor.values ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.all_values ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.spike_trains ... ok | |
| Doctest: brian2.monitors.spikemonitor.SpikeMonitor.values ... ok | |
| Doctest: brian2.monitors.statemonitor.StateMonitor.record_single_timestep ... ok | |
| Doctest: brian2.parsing.statements.parse_statement ... ok | |
| SKIP: Do not test sphinx extension | |
| Doctest: brian2.stateupdaters.base.extract_method_options ... ok | |
| Doctest: brian2.stateupdaters.explicit.ExplicitStateUpdater.__call__ ... ok | |
| Doctest: brian2.stateupdaters.explicit.split_expression ... ok | |
| Doctest: brian2.stateupdaters.exponential_euler.get_conditionally_linear_system ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.dot ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.fill ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.in_best_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.in_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.Quantity.with_dimensions ... ok | |
| Doctest: brian2.units.fundamentalunits.Unit ... ok | |
| Doctest: brian2.units.fundamentalunits.check_units ... ok | |
| Doctest: brian2.units.fundamentalunits.get_or_create_dimension ... ok | |
| Doctest: brian2.units.fundamentalunits.in_best_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.in_unit ... ok | |
| Doctest: brian2.units.fundamentalunits.quantity_with_dimensions ... ok | |
| Doctest: brian2.units.fundamentalunits.register_new_unit ... ok | |
| SKIP: Do not test numpy docstrings | |
| Doctest: brian2.utils.arrays.calc_repeats ... ok | |
| Doctest: brian2.utils.logger.catch_logs ... ok | |
| Doctest: brian2.utils.stringtools.deindent ... ok | |
| Doctest: brian2.utils.stringtools.get_identifiers ... ok | |
| Doctest: brian2.utils.stringtools.indent ... ok | |
| Doctest: brian2.utils.stringtools.strip_empty_lines ... ok | |
| Doctest: brian2.utils.stringtools.word_substitute ... ok | |
| brian2.tests.test_GSL.test_GSL_internal_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_stochastic ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| ok | |
| brian2.tests.test_GSL.test_GSL_failing_directory ... ok | |
| brian2.tests.test_base.test_base ... ok | |
| brian2.tests.test_base.test_names ... ok | |
| brian2.tests.test_base.test_duplicate_names ... ok | |
| brian2.tests.test_clocks.test_clock_attributes ... ok | |
| brian2.tests.test_clocks.test_clock_dt_change ... ok | |
| brian2.tests.test_clocks.test_defaultclock ... ok | |
| brian2.tests.test_clocks.test_set_interval_warning ... ok | |
| brian2.tests.test_codegen.test_auto_target ... ok | |
| Test that the analyse_identifiers function works on a simple clear example. ... ok | |
| Test finding identifiers including subexpressions. ... ok | |
| brian2.tests.test_codegen.test_write_to_subexpression ... ok | |
| brian2.tests.test_codegen.test_repeated_subexpressions ... ok | |
| This test checks that code translation works with nested subexpressions. ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_integer ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_boolean ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_no_optimisation ... ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_simplification ... WARNING The expression "i1 / 1" divides two integer values. In previous versions of Brian, this would have used either an integer ("flooring") or a floating point division, depending on the Python version and the code generation target. In the current version, it always uses a floating point division. Explicitly ask for an integer division ("//"), or turn one of the operands into a floating point value (e.g. replace "1/2" by "1.0/2") to no longer receive this warning. [brian2.parsing.bast.floating_point_division] | |
| ok | |
| brian2.tests.test_codegen.test_apply_loop_invariant_optimisation_constant_evaluation ... ok | |
| brian2.tests.test_codegen.test_automatic_augmented_assignments ... ok | |
| Test creating expressions. ... ok | |
| brian2.tests.test_codestrings.test_split_stochastic ... ok | |
| Test the string representation of expressions and statements. Assumes that ... ok | |
| brian2.tests.test_devices.test_set_reset_device_implicit ... FAIL | |
| brian2.tests.test_devices.test_set_reset_device_explicit ... ok | |
| brian2.tests.test_equations.test_utility_functions ... ok | |
| brian2.tests.test_equations.test_identifier_checks ... ok | |
| Test the parsing of equation strings ... ok | |
| Test replacing variables via keyword arguments ... ok | |
| Tests for replacements that should not work ... ok | |
| brian2.tests.test_equations.test_substitute ... ok | |
| Test that the Equations constructor raises errors correctly ... ok | |
| brian2.tests.test_equations.test_unit_checking ... ok | |
| Test accessing the various properties of equation objects ... ok | |
| brian2.tests.test_equations.test_concatenation ... ok | |
| brian2.tests.test_equations.test_extract_subexpressions ... ok | |
| brian2.tests.test_equations.test_repeated_construction ... ok | |
| Test the string representation (only that it does not throw errors). ... ok | |
| brian2.tests.test_equations.test_ipython_pprint ... ok | |
| Make sure that symbolic constants are understood correctly by sympy ... ok | |
| brian2.tests.test_functions.test_timestep_function ... ok | |
| brian2.tests.test_functions.test_user_defined_function_discarding_units ... ok | |
| brian2.tests.test_functions.test_user_defined_function_discarding_units_2 ... ok | |
| brian2.tests.test_functions.test_function_implementation_container ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_access ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_resize_up_down ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_resize_down_up ... ok | |
| brian2.tests.test_memory.test_dynamic_array_1d_shrink ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_access ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_resize_up_down ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_resize_down_up ... ok | |
| brian2.tests.test_memory.test_dynamic_array_2d_shrink ... ok | |
| brian2.tests.test_monitor.test_rate_monitor_smoothed_rate ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_smoothed_rate_incorrect ... ok | |
| brian2.tests.test_morphology.test_attributes_soma ... ok | |
| brian2.tests.test_morphology.test_attributes_soma_coordinates ... ok | |
| brian2.tests.test_morphology.test_attributes_cylinder ... ok | |
| brian2.tests.test_morphology.test_attributes_cylinder_coordinates ... ok | |
| brian2.tests.test_morphology.test_attributes_section ... ok | |
| brian2.tests.test_morphology.test_attributes_section_coordinates_single ... ok | |
| brian2.tests.test_morphology.test_attributes_section_coordinates_all ... ok | |
| brian2.tests.test_morphology.test_tree_cables_schematic ... ok | |
| brian2.tests.test_morphology.test_tree_cables_coordinates ... ok | |
| brian2.tests.test_morphology.test_tree_cables_from_points ... ok | |
| brian2.tests.test_morphology.test_tree_soma_schematic ... ok | |
| brian2.tests.test_morphology.test_tree_soma_coordinates ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points_3_point_soma ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_points_3_point_soma_incorrect ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_swc ... ok | |
| brian2.tests.test_morphology.test_tree_soma_from_swc_3_point_soma ... ok | |
| brian2.tests.test_morphology.test_construction_incorrect_arguments ... ok | |
| brian2.tests.test_morphology.test_from_points_minimal ... ok | |
| brian2.tests.test_morphology.test_from_points_incorrect ... ok | |
| brian2.tests.test_morphology.test_subtree_deletion ... ok | |
| brian2.tests.test_morphology.test_subgroup_indices ... ok | |
| brian2.tests.test_morphology.test_subgroup_attributes ... ok | |
| brian2.tests.test_morphology.test_subgroup_incorrect ... ok | |
| brian2.tests.test_morphology.test_topology ... ok | |
| brian2.tests.test_morphology.test_copy_section_soma ... ok | |
| brian2.tests.test_morphology.test_copy_section_section ... ok | |
| brian2.tests.test_morphology.test_copy_section_cylinder ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_deterministic ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_sections ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_compartments ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_random_all ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_no_overwrite ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_overwrite ... ok | |
| brian2.tests.test_morphology.test_generate_coordinates_mixed_overwrite ... ok | |
| brian2.tests.test_morphology.test_str_repr ... ok | |
| Test that the default namespace contains standard units and functions. ... ok | |
| Test resolution with an explicitly provided namespace ... ok | |
| brian2.tests.test_namespaces.test_errors ... ok | |
| brian2.tests.test_namespaces.test_resolution ... ok | |
| brian2.tests.test_namespaces.test_warning ... ok | |
| brian2.tests.test_namespaces.test_warning_internal_variables ... ok | |
| Test some wrong uses of `Network` and `MagicNetwork` ... ok | |
| Test `Network.__contains__`. ... ok | |
| brian2.tests.test_network.test_empty_network ... ok | |
| brian2.tests.test_network.test_network_single_object ... FAIL | |
| brian2.tests.test_network.test_network_two_objects ... FAIL | |
| brian2.tests.test_network.test_network_from_dict ... FAIL | |
| brian2.tests.test_network.test_network_different_clocks ... FAIL | |
| brian2.tests.test_network.test_network_different_when ... FAIL | |
| brian2.tests.test_network.test_network_default_schedule ... ok | |
| brian2.tests.test_network.test_network_schedule_change ... FAIL | |
| brian2.tests.test_network.test_network_before_after_schedule ... FAIL | |
| brian2.tests.test_network.test_network_custom_slots ... FAIL | |
| brian2.tests.test_network.test_network_incorrect_schedule ... ok | |
| brian2.tests.test_network.test_schedule_warning ... ok | |
| brian2.tests.test_network.test_scheduling_summary_magic ... ok | |
| brian2.tests.test_network.test_scheduling_summary ... ok | |
| brian2.tests.test_network.test_magic_network ... FAIL | |
| brian2.tests.test_network.test_network_stop ... FAIL | |
| brian2.tests.test_network.test_network_operations ... FAIL | |
| brian2.tests.test_network.test_incorrect_network_operations ... ok | |
| brian2.tests.test_network.test_network_active_flag ... FAIL | |
| brian2.tests.test_network.test_network_t ... FAIL | |
| brian2.tests.test_network.test_incorrect_dt_defaultclock ... ok | |
| brian2.tests.test_network.test_incorrect_dt_custom_clock ... ok | |
| brian2.tests.test_network.test_network_remove ... FAIL | |
| brian2.tests.test_network.test_invalid_magic_network ... FAIL | |
| brian2.tests.test_network.test_multiple_networks_invalid ... ok | |
| Test that holding a weak reference to an object does not make it get ... ok | |
| Test that creating unused objects does not affect the magic system. ... ok | |
| brian2.tests.test_network.test_network_access ... ok | |
| brian2.tests.test_network.test_dependency_check ... ok | |
| Make sure all expected objects are collected in a magic network ... ok | |
| Very basic test of progress reporting ... FAIL | |
| Test wrong use of the report option ... NOT_IMPLEMENTED: The C++ standalone device does not support multiple report functions, each run has to use the same (or none). | |
| brian2.tests.test_network.test_store_restore ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_to_file ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_to_file_new_objects ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_to_file_differing_nets ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_magic ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_magic_to_file ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_store_restore_spikequeue ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_defaultclock_dt_changes ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_dt_restore ... NOT_IMPLEMENTED: The store/restore mechanism is not supported in the C++ standalone | |
| brian2.tests.test_network.test_continuation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_get_set_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_multiple_runs_defaultclock ... ok | |
| brian2.tests.test_network.test_multiple_runs_defaultclock_incorrect ... ok | |
| brian2.tests.test_network.test_profile_ipython_html ... ok | |
| Check that `start_scope` works as expected. ... ok | |
| brian2.tests.test_network.test_small_runs ... WARNING The expression "(i + 1) / N" divides two integer values. In previous versions of Brian, this would have used either an integer ("flooring") or a floating point division, depending on the Python version and the code generation target. In the current version, it always uses a floating point division. Explicitly ask for an integer division ("//"), or turn one of the operands into a floating point value (e.g. replace "1/2" by "1.0/2") to no longer receive this warning. [brian2.parsing.bast.floating_point_division] | |
| NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_long_run_dt_change ... ok | |
| A basic test that creating a NeuronGroup works. ... ok | |
| Test that integer operations and variable definitions work. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the correct creation of the variables dictionary. ... ok | |
| brian2.tests.test_neurongroup.test_variableview_calculations ... ok | |
| Test incorrect uses of linked variables. ... ok | |
| Test linking a variable with an index specified as an array ... ok | |
| Test a "repeat"-like connection between two groups of different size ... ok | |
| Linked to a linked variable, without indices ... ok | |
| Linked to a linked variable, first without indices, second with indices ... ok | |
| Linked to a linked variable, first with indices, second without indices ... ok | |
| Linked to a linked variable, both use indices ... ok | |
| Link to a linked variable that links to a linked variable, all use indices ... ok | |
| Test linking a variable from a subgroup ... ok | |
| Test linking a variable from a subgroup with indexing ... ok | |
| Test errors when providing incorrect index arrays ... ok | |
| Test linking to a synaptic variable (should raise an error). ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_incorrect ... ok | |
| Test that the namespace does not have to be complete at creation time. ... ok | |
| brian2.tests.test_neurongroup.test_namespace_errors ... ok | |
| brian2.tests.test_neurongroup.test_namespace_warnings ... ok | |
| Test that unit errors in thresholds and resets are detected. ... ok | |
| Test that syntax errors are already caught at initialization time. ... ok | |
| brian2.tests.test_neurongroup.test_custom_events ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_incorrect_custom_event_definition ... ok | |
| brian2.tests.test_neurongroup.test_state_variable_access ... ok | |
| brian2.tests.test_neurongroup.test_unknown_state_variables ... ok | |
| brian2.tests.test_neurongroup.test_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_subexpression_with_constant ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_scalar_parameter_access ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_scalar_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_constant_subexpression_order ... ok | |
| brian2.tests.test_neurongroup.test_subexpression_checks ... ok | |
| brian2.tests.test_neurongroup.test_repr ... ok | |
| brian2.tests.test_neurongroup.test_ipython_html ... ok | |
| brian2.tests.test_neurongroup.test_indices ... ERROR | |
| Check the utility function get_dtype ... ok | |
| brian2.tests.test_neurongroup.test_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_set_states ... FAIL | |
| brian2.tests.test_neurongroup.test_get_states_pandas ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_set_states_pandas ... ok | |
| brian2.tests.test_neurongroup.test_no_code ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_python ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_numpy ... ok | |
| brian2.tests.test_parsing.test_parse_expressions_sympy ... ok | |
| brian2.tests.test_parsing.test_abstract_code_dependencies ... ok | |
| brian2.tests.test_parsing.test_is_boolean_expression ... ok | |
| brian2.tests.test_parsing.test_parse_expression_unit ... ok | |
| brian2.tests.test_parsing.test_value_from_expression ... ok | |
| brian2.tests.test_parsing.test_abstract_code_from_function ... ok | |
| brian2.tests.test_parsing.test_extract_abstract_code_functions ... ok | |
| brian2.tests.test_parsing.test_substitute_abstract_code_functions ... ok | |
| brian2.tests.test_parsing.test_sympytools ... ok | |
| brian2.tests.test_parsing.test_error_messages ... ok | |
| brian2.tests.test_poissongroup.test_rate_unit_check ... ok | |
| brian2.tests.test_poissongroup.test_poissongroup_namespace ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissoninput.test_poissoninput_errors ... ok | |
| brian2.tests.test_preferences.test_defaultvalidator ... ok | |
| brian2.tests.test_preferences.test_brianpreference ... ok | |
| Test that you cannot set illegal preference names. ... ok | |
| brian2.tests.test_preferences.test_brianglobalpreferences ... ok | |
| Test various ways of accessing preferences ... ok | |
| brian2.tests.test_preferences.test_str_repr ... ok | |
| brian2.tests.test_refractory.test_add_refractoriness ... ok | |
| brian2.tests.test_refractory.test_missing_refractory_warning ... ok | |
| brian2.tests.test_refractory.test_refractoriness_types ... ok | |
| Test that the conditional_write attribute is set correctly ... ok | |
| brian2.tests.test_spatialneuron.test_custom_events ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_construction ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_construction_coordinates ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_allowed_integration ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_indexing ... ok | |
| brian2.tests.test_spatialneuron.test_tree_index_consistency ... ok | |
| brian2.tests.test_spatialneuron.test_spatialneuron_subtree_assignment ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_spatialneuron_morphology_assignment ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spikegenerator.test_spikegenerator_incorrect_values ... ok | |
| Test that you cannot provide incorrect period arguments or combine ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_multiple_spikes_per_bin ... ok | |
| brian2.tests.test_spikequeue.test_spikequeue ... ok | |
| Test the parsing of explicit state updater descriptions. ... ok | |
| brian2.tests.test_stateupdaters.test_non_autonomous_equations ... ok | |
| Assure that __str__ and __repr__ do not raise errors ... ok | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_basic ... ok | |
| Make sure that the code does the distinction between temporary variables ... ok | |
| Make sure that the code does the distinction between temporary variables ... ok | |
| Check whether the returned abstract code is as expected. ... ok | |
| Test integration for a simple model with several state variables. ... ok | |
| brian2.tests.test_stateupdaters.test_illegal_calls ... ok | |
| brian2.tests.test_stateupdaters.test_priority ... ok | |
| Test state updater registration. ... ok | |
| Test the determination of suitable state updaters. ... WARNING The 'independent' state updater is deprecated and might be removed in future versions of Brian. [brian2.stateupdaters.exact.deprecated_independent] | |
| ok | |
| brian2.tests.test_stateupdaters.test_locally_constant_check ... ok | |
| Test the string representation of a subgroup. ... ok | |
| brian2.tests.test_subgroup.test_state_variables_group_as_index ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_state_variables_group_as_index_problematic ... ok | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups_problematic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_wrong_indexing ... ok | |
| A basic test that creating a Synapses object works. ... ok | |
| brian2.tests.test_synapses.test_creation_errors ... ok | |
| brian2.tests.test_synapses.test_name_clashes ... ok | |
| brian2.tests.test_synapses.test_equations_unit_check ... ok | |
| brian2.tests.test_synapses.test_pre_before_post ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_invalid_custom_event ... ok | |
| Make sure that a `Synapse` object uses the correct clocks. ... ok | |
| brian2.tests.test_synapses.test_no_synapses ... FAIL | |
| brian2.tests.test_synapses.test_no_synapses_variable_write ... ok | |
| brian2.tests.test_synapses.test_multiple_summed_variables ... ok | |
| brian2.tests.test_synapses.test_summed_variables_overlapping_subgroups ... ok | |
| brian2.tests.test_synapses.test_summed_variables_linked_variables ... ok | |
| brian2.tests.test_synapses.test_repr ... ok | |
| brian2.tests.test_synapses.test_pre_post_variables ... ok | |
| brian2.tests.test_synapses.test_variables_by_owner ... ok | |
| brian2.tests.test_synapses.test_permutation_analysis ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_syntax ... ok | |
| brian2.tests.test_synapses.test_synapse_generator_range_noint ... ok | |
| brian2.tests.test_templates.test_templates ... ok | |
| brian2.tests.test_timedarray.test_timedarray_direct_use ... ok | |
| brian2.tests.test_timedarray.test_timedarray_incorrect_use ... ok | |
| Test the construction of quantity objects ... ok | |
| Test various ways of getting/comparing the dimensions of a quantity. ... ok | |
| Test displaying a quantity in different units ... ok | |
| brian2.tests.test_units.test_scale ... ok | |
| Test pickling of units. ... ok | |
| Test that str representations do not raise any errors and that repr ... ok | |
| brian2.tests.test_units.test_slicing ... ok | |
| brian2.tests.test_units.test_setting ... ok | |
| brian2.tests.test_units.test_multiplication_division ... ok | |
| brian2.tests.test_units.test_addition_subtraction ... ok | |
| brian2.tests.test_units.test_unary_operations ... ok | |
| Test whether binary operations work when they should and raise ... ok | |
| Test raising quantities to a power. ... ok | |
| brian2.tests.test_units.test_inplace_operations ... ok | |
| Test functions that discard units. ... ok | |
| Test the unitsafe functions wrapping their numpy counterparts. ... ok | |
| Test a couple of functions/methods that need special treatment. ... ok | |
| brian2.tests.test_units.test_numpy_functions_same_dimensions ... ok | |
| Check numpy functions that return indices. ... ok | |
| Test that numpy functions that should work on dimensionless quantities only ... ok | |
| Test some numpy functions that change the dimensions of the quantity. ... ok | |
| Assures that certain numpy functions raise a TypeError when called on ... ok | |
| Assure that logical numpy functions work on all quantities and return ... ok | |
| brian2.tests.test_units.test_arange_linspace ... ok | |
| Test converting to and from a list. ... ok | |
| Test the check_units decorator ... ok | |
| Test get_unit ... ok | |
| brian2.tests.test_units.test_get_best_unit ... ok | |
| Check switching off unit checks (used for external functions). ... ok | |
| Test the fail_for_dimension_mismatch function. ... ok | |
| brian2.tests.test_units.test_deepcopy ... ok | |
| brian2.tests.test_units.test_inplace_on_scalars ... ok | |
| brian2.tests.test_units.test_all_units_list ... ok | |
| brian2.tests.test_units.test_constants ... ok | |
| Test information about the environment we are running under. ... ok | |
| brian2.tests.test_utils.test_spell_check ... ok | |
| brian2.tests.test_variables.test_construction_errors ... ok | |
| brian2.tests.test_variables.test_str_repr ... ok | |
| brian2.tests.test_variables.test_dtype_str ... ok | |
| ====================================================================== | |
| ERROR: brian2.tests.test_neurongroup.test_indices | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1257, in test_indices | |
| assert_allclose(G.indices[5:], G.indices['i >= 5']) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 304, in __getitem__ | |
| codeobj_class=device.code_object_class(fallback_pref='codegen.string_expression_target') | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 214, in create_runner_codeobj | |
| template = getattr(codeobj_class.templater, template_name) | |
| File "D:\programming\brian2\brian2\codegen\templates.py", line 121, in __getattr__ | |
| return self.templates.get_template(item) | |
| File "D:\programming\brian2\brian2\codegen\templates.py", line 77, in get_template | |
| raise KeyError('No template with name "%s" found.' % name) | |
| KeyError: 'No template with name "group_get_indices" found.' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_devices.test_set_reset_device_implicit | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_devices.py", line 45, in test_set_reset_device_implicit | |
| assert get_device() is runtime_device | |
| AssertionError | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_single_object | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 78, in test_network_single_object | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_two_objects | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 93, in test_network_two_objects | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_from_dict | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 108, in test_network_from_dict | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_different_clocks | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 133, in test_network_different_clocks | |
| assert updates == ('xxxxxxxxxxy'*100000) | |
| AssertionError | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_different_when | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 145, in test_network_different_when | |
| assert_equal(''.join(NameLister.updates), 'xyxyxy') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: '' | |
| DESIRED: 'xyxyxy' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_schedule_change | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 165, in test_network_schedule_change | |
| assert_equal(''.join(NameLister.updates), 'xyxyxy') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: '' | |
| DESIRED: 'xyxyxy' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_before_after_schedule | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 180, in test_network_before_after_schedule | |
| assert_equal(''.join(NameLister.updates), 'yxyxyx') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: '' | |
| DESIRED: 'yxyxyx' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_custom_slots | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 192, in test_network_custom_slots | |
| assert_equal(''.join(NameLister.updates), 'xyzxyzxyz') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: '' | |
| DESIRED: 'xyzxyzxyz' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_magic_network | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 381, in test_magic_network | |
| assert_equal(x.count, 100) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 100 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_stop | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 407, in test_network_stop | |
| assert_equal(defaultclock.t, 1*ms) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 780, in assert_array_compare | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Arrays are not equal | |
| (mismatch 100.0%) | |
| x: Quantity(0.01) | |
| y: Quantity(0.001) | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_operations | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 449, in test_network_operations | |
| assert_equal(''.join(seq), 'bBacC'*10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: '' | |
| DESIRED: 'bBacCbBacCbBacCbBacCbBacCbBacCbBacCbBacCbBacCbBacC' | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_active_flag | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 484, in test_network_active_flag | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_t | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 499, in test_network_t | |
| assert_equal(x.count, 5) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 5 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_network_remove | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 563, in test_network_remove | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: brian2.tests.test_network.test_invalid_magic_network | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 585, in test_invalid_magic_network | |
| assert_equal(x.count, 10) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 414, in assert_equal | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Items are not equal: | |
| ACTUAL: 0 | |
| DESIRED: 10 | |
| ====================================================================== | |
| FAIL: Very basic test of progress reporting | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 820, in test_progress_report | |
| assert len(out.split('\n')) >= 2 and len(err) == 0 | |
| AssertionError | |
| ====================================================================== | |
| FAIL: brian2.tests.test_neurongroup.test_set_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1369, in test_set_states | |
| assert_raises(DimensionMismatchError, lambda: G.set_states({'x': np.arange(2, 12)*volt}, units=True)) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 1235, in assert_raises | |
| return _d.assertRaises(*args,**kwargs) | |
| AssertionError: DimensionMismatchError not raised | |
| ====================================================================== | |
| FAIL: brian2.tests.test_synapses.test_no_synapses | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1126, in test_no_synapses | |
| assert_raises(TypeError, lambda: net.run(1*ms)) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 1235, in assert_raises | |
| return _d.assertRaises(*args,**kwargs) | |
| AssertionError: TypeError not raised | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_smoothed_rate | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 456, in test_rate_monitor_smoothed_rate | |
| except_index = np.array([idx for idx in xrange(len(r_mon.rate)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1238, in __len__ | |
| return len(self.get_item(slice(None), level=1)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test wrong use of the report option | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 855, in test_progress_report_incorrect | |
| assert_raises(ValueError, lambda: net.run(1*ms, report='unknown')) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 1235, in assert_raises | |
| return _d.assertRaises(*args,**kwargs) | |
| File "C:\Anaconda\lib\unittest\case.py", line 473, in assertRaises | |
| callableObj(*args, **kwargs) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 855, in <lambda> | |
| assert_raises(ValueError, lambda: net.run(1*ms, report='unknown')) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1249, in network_run | |
| raise NotImplementedError('The C++ standalone device does not ' | |
| NotImplementedError: The C++ standalone device does not support multiple report functions, each run has to use the same (or none). | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 910, in test_store_restore | |
| net.store() # default time slot | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_to_file | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 953, in test_store_restore_to_file | |
| net.store(filename=filename) # default time slot | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_to_file_new_objects | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1007, in test_store_restore_to_file_new_objects | |
| net.store(filename=filename) # default time slot | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_to_file_differing_nets | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1045, in test_store_restore_to_file_differing_nets | |
| net.store(filename=filename) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_magic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1069, in test_store_restore_magic | |
| store() # default time slot | |
| File "D:\programming\brian2\brian2\core\magic.py", line 391, in store | |
| magic_network.store(name=name, filename=filename, level=1) | |
| File "D:\programming\brian2\brian2\core\magic.py", line 238, in store | |
| super(MagicNetwork, self).store(name=name, filename=filename) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_magic_to_file | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1108, in test_store_restore_magic_to_file | |
| store(filename=filename) # default time slot | |
| File "D:\programming\brian2\brian2\core\magic.py", line 391, in store | |
| magic_network.store(name=name, filename=filename, level=1) | |
| File "D:\programming\brian2\brian2\core\magic.py", line 238, in store | |
| super(MagicNetwork, self).store(name=name, filename=filename) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_store_restore_spikequeue | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1146, in test_store_restore_spikequeue | |
| store() | |
| File "D:\programming\brian2\brian2\core\magic.py", line 391, in store | |
| magic_network.store(name=name, filename=filename, level=1) | |
| File "D:\programming\brian2\brian2\core\magic.py", line 238, in store | |
| super(MagicNetwork, self).store(name=name, filename=filename) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_defaultclock_dt_changes | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1167, in test_defaultclock_dt_changes | |
| assert_equal(mon.t[:], [0, dt/ms]*ms) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_dt_restore | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1192, in test_dt_restore | |
| net.store() | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1302, in network_store | |
| raise NotImplementedError(('The store/restore mechanism is not ' | |
| NotImplementedError: The store/restore mechanism is not supported in the C++ standalone | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_continuation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1224, in test_continuation | |
| assert_equal(mon.t[:], mon2.t[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_get_set_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1234, in test_get_set_states | |
| states1 = net.get_states() | |
| File "D:\programming\brian2\brian2\core\network.py", line 648, in get_states | |
| level=level+1) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_small_runs | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1370, in test_small_runs | |
| assert_allclose(mon_1.t_[:], mon_2.t_[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test that integer operations and variable definitions work. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 71, in test_integer_variables_and_mod | |
| assert_equal(G.j[:], G.i[:]%n) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_custom_events | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 745, in test_custom_events | |
| assert_allclose(G.event_time1[:], [0, 1]*ms) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1051, in test_subexpression | |
| assert_allclose(G.expr[:], 2*10*np.arange(10)*Hz + 5*Hz) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_subexpression_with_constant | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1059, in test_subexpression_with_constant | |
| assert_allclose(G.I[:], np.array([2])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_scalar_parameter_access | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1113, in test_scalar_parameter_access | |
| assert_allclose(G.freq[:], 150*Hz) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_scalar_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1141, in test_scalar_subexpression | |
| assert G.sub[:] == 150*Hz | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_get_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1338, in test_get_states | |
| states_units = G.get_states(['v', 'x', 'subexpr', 'subexpr2'], units=True) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_get_states_pandas | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1394, in test_get_states_pandas | |
| states = G.get_states(['v', 'x', 'subexpr', 'subexpr2'], units=False, format='pandas') | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 56, in export_data | |
| units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_poissongroup_namespace | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 118, in test_poissongroup_namespace | |
| assert mon.num_spikes == 2 | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 428, in num_spikes | |
| return self.num_events | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 340, in num_events | |
| return self.N[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_custom_events | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 32, in test_custom_events | |
| assert_allclose(G.event_time1[:], [0.1, 0, 0]*ms) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_construction | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 61, in test_construction | |
| assert_allclose(neuron.L.main.v, 0*mV) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_construction_coordinates | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 123, in test_construction_coordinates | |
| assert_allclose(neuron.L.main.v, 0*mV) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_spatialneuron_subtree_assignment | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 728, in test_spatialneuron_subtree_assignment | |
| neuron.sec1.v += 1*volt | |
| File "D:\programming\brian2\brian2\groups\group.py", line 425, in __setattr__ | |
| level=level+1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 913, in set_item | |
| check_units=check_units) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 406, in variableview_set_with_index_array | |
| value = Quantity(value) | |
| File "D:\programming\brian2\brian2\units\fundamentalunits.py", line 919, in __new__ | |
| subarr = np.array(arr, dtype=dtype, copy=copy).view(cls) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_spatialneuron_morphology_assignment | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 752, in test_spatialneuron_morphology_assignment | |
| assert_allclose(neuron.sec1.sec11.v[:], np.ones(2)*volt) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_state_variables_group_as_index | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 106, in test_state_variables_group_as_index | |
| assert_equal(G.v[:], np.array([0, 0, 0, 0, 1, 1, 1, 1, 1, 0])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapses_access_subgroups_problematic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 467, in test_synapses_access_subgroups_problematic | |
| S.w.__setitem__(item, value) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 928, in __setitem__ | |
| self.set_item(item, value, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 922, in set_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 993, in set_with_expression | |
| indices = np.atleast_1d(self.indexing(item)) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 531, in __call__ | |
| pre_synapses = find_synapses(I, self.synaptic_pre.get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_pre_before_post | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 873, in test_pre_before_post | |
| assert G.x == 2 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ---------------------------------------------------------------------- | |
| Ran 347 tests in 42.780s | |
| FAILED (NOT_IMPLEMENTED=31, SKIP=2, errors=1, failures=19) | |
| Running tests for target numpy: | |
| brian2.tests.test_GSL.test_GSL_default_function ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... ok | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... ok | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... FAIL | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_synapses ... ok | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_refractory ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_save_step_count ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_x_variable ... ok | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_codegen.test_clear_cache_numpy ... ok | |
| brian2.tests.test_codegen.test_clear_cache_weave ... SKIP: weave-only test | |
| brian2.tests.test_codegen.test_clear_cache_cython ... SKIP: Cython-only test | |
| brian2.tests.test_complex_examples.test_cuba ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Make sure that symbolic constants use the correct values in code ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test that math functions give the same result, regardless of whether used ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_clip ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_bool_to_int ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_timestep_function_during_run ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_user_defined_function ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the preparation of functions for use in code with check_units. ... NOT_IMPLEMENTED: Cannot use function all_specified: 'No implementation available for target cpp. Available implementations: ' | |
| brian2.tests.test_functions.test_simple_user_defined_function ... NOT_IMPLEMENTED: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 335, in code_object | |
| name=name) | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 167, in __init__ | |
| self.variables_to_namespace() | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 190, in variables_to_namespace | |
| value = var.get_value() | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Error encountered with object named "statemonitor_1". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| (See above for original error message and traceback.) | |
| brian2.tests.test_functions.test_manual_user_defined_function ... NOT_IMPLEMENTED: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| Error encountered with object named "statemonitor_1". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| (See above for original error message and traceback.) | |
| brian2.tests.test_functions.test_manual_user_defined_function_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_weave ... SKIP: weave-only test | |
| brian2.tests.test_functions.test_function_dependencies_cython ... SKIP: cython-only test | |
| brian2.tests.test_functions.test_function_dependencies_numpy ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_binomial ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_declare_types ... NOT_IMPLEMENTED: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function f: 'No implementation available for target cpp. Available implementations: numpy' | |
| Error encountered with object named "neurongroup_1_stateupdater". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\unittest\case.py", line 473, in assertRaises | |
| callableObj(*args, **kwargs) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function f: 'No implementation available for target cpp. Available implementations: numpy' | |
| (See above for original error message and traceback.) | |
| brian2.tests.test_functions.test_multiple_stateless_function_calls ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_indexing ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_bug_824 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_event_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_trains ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_synapses_state_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_resize ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_morphology.test_tree_cables_from_swc ... ok | |
| Somewhat realistic test with a loop of magic networks ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... Starting simulation at t=0 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0.001 s | |
| Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_profile ... ERROR | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... ok | |
| brian2.tests.test_network.test_multiple_runs_function_change ... ok | |
| Test that a NeuronGroup with a stochastic variable can be simulated. Only ... ok | |
| Test that a NeuronGroup with multiplicative noise can be simulated. Only ... ok | |
| Test the correct handling of scalar variables ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the correct handling of referred scalar variables in subexpressions ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test correct uses of linked variables. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test linked variable from a size 1 group. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test a subexpression referring to a linked variable. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test a linked variable referring to a subexpression without indices ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test a linked variable referring to a subexpression with indices ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test a complicated setup (not unlikely when using brian hears) ... ok | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test that threshold and reset work in the expected way. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_custom_events_schedule ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the setting and accessing of state variables. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_state_variable_access_strings ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| brian2.tests.test_neurongroup.test_state_variable_set_strings ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_constant_variable_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test an issue around variables aliasing other variables (#259) ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_random_vector_values ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_random_values_random_seed ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_random_values_fixed_seed ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_random_values_fixed_and_random ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_run_regularly_scheduling ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_run_regularly_dt ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_semantics_floor_division ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_semantics_floating_point_division ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_neurongroup.test_semantics_mod ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_numpy_codegen.test_error_message ... NOT_IMPLEMENTED: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| Error encountered with object named "neurongroup_2_run_regularly". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| (See above for original error message and traceback.) | |
| brian2.tests.test_parsing.test_parse_expressions_cpp ... SKIP: weave-only test | |
| brian2.tests.test_poissongroup.test_single_rates ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissongroup.test_rate_arrays ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissongroup.test_time_dependent_rate ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissongroup.test_propagation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissongroup.test_poissongroup_subgroup ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissoninput.test_poissoninput ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_poissoninput.test_poissoninput_refractory ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_basic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_variables ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_threshold_basic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_repeated ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_repeated_legacy ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_refractoriness_threshold ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_conditional_write_behaviour ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_refractory.test_conditional_write_automatic_and_manual ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test simulation of an infinite cable vs. theory for current pulse (Green function) ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test simulation of short cylinder vs. theory for constant current. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Rallpack 1 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Rallpack 2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Rallpack 3 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test simulation of a cylinder plus two branches, with diameters according to Rall's formula ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_basic_diffusion ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spatialneuron.test_spatialneuron_capacitive_currents ... ok | |
| Test that `SpikeGeneratorGroup` connects properly. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Basic test for `SpikeGeneratorGroup`. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Basic test for `SpikeGeneratorGroup` with already sorted spike events. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Basic test for `SpikeGeneratorGroup`. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Basic test for `SpikeGeneratorGroup`. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spikegenerator.test_spikegenerator_change_spikes ... ok | |
| Basic test for `SpikeGeneratorGroup`. ... ok | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_extended ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_multiple_noise_variables_deterministic_noise ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_pure_noise_deterministic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Make sure that the integration of a (non-stochastic) differential equation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Make sure that the integration of a (non-stochastic) differential equation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_refractory ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_refractory_stochastic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_stateupdaters.test_check_for_invalid_values_linear_integrator ... ok | |
| Test the setting and accessing of state variables in subgroups. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_state_variables_simple ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test accessing subgroups with string indices. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| brian2.tests.test_subgroup.test_state_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Make sure that shared variables work with subgroups ... ok | |
| brian2.tests.test_subgroup.test_synapse_creation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_creation_state_vars ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_creation_generator ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_creation_generator_random ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synapse_access ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| brian2.tests.test_subgroup.test_synapses_access_subgroups ... NOT_IMPLEMENTED: Cannot set variable "w" this way in standalone, try using string expressions. | |
| brian2.tests.test_subgroup.test_subgroup_summed_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Assure that subexpressions in targeted groups are handled correctly. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Assure that subexpressions are handled correctly, even ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synaptic_propagation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_synaptic_propagation_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_run_regularly ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_subgroup.test_spike_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Using subgroups without keeping an explicit reference. Basic access. ... ok | |
| Using subgroups without keeping an explicit reference. Monitors ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Using subgroups without keeping an explicit reference. Monitors ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Using subgroups without keeping an explicit reference. Synapses ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Create a subgroup of a subgroup ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the count of outgoing/incoming synapses per neuron. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test connecting synapses with explictly given arrays ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_string_deterministic_full_custom ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_random_with_condition ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_random_with_condition_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test random connections. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_connection_random_without_condition ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test multiple synapses per connection. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Assign values to state variables in various ways ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_state_variable_indexing ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_indices ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Assure that subexpressions in targeted groups are handled correctly. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Assure that subexpressions in targeted groups are handled correctly. ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_delay_specification ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_delays_pathways ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_delays_pathways_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_pre_post_simple ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_simple ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_custom_event ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_scalar_delay ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_transmission_boolean_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_changed_dt_spikes_in_queue ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_summed_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_summed_variable_pre_and_post ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_summed_variable_differing_group_size ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_summed_variable_errors ... ok | |
| brian2.tests.test_synapses.test_summed_variables_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_scalar_parameter_access ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_scalar_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_sim_with_scalar_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_sim_with_scalar_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_sim_with_constant_subexpression ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_external_variables ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_event_driven ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_vectorisation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_vectorisation_STDP_like ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synaptic_equations ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_with_run_regularly ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_to_synapses ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_ufunc_at_vectorisation ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_generator_deterministic_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_generator_random ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_refractory ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_synapses.test_synapses_refractory_rand ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_thresholder.test_simple_threshold ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_thresholder.test_scalar_threshold ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_semantics ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_no_units ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_with_units ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_2d ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_no_upsampling ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Use a very long timedarray (with a big dt), where the upsampling can lead ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_timedarray.test_timedarray_repeated_use ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_units.test_units_vs_quantities ... ok | |
| ====================================================================== | |
| ERROR: brian2.tests.test_network.test_profile | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1287, in test_profile | |
| info = net.profiling_info | |
| File "D:\programming\brian2\brian2\core\network.py", line 383, in profiling_info | |
| return self.get_profiling_info() | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1312, in network_get_profiling_info | |
| raise ValueError('No profiling info collected (did you run with ' | |
| ValueError: No profiling info collected (did you run with profile=True?) | |
| ====================================================================== | |
| FAIL: brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_GSL.py", line 21, in wrapped | |
| func() | |
| File "D:\programming\brian2\brian2\tests\test_GSL.py", line 416, in test_GSL_fixed_timestep_big_dt_small_error | |
| assert_raises((RuntimeError, IntegrationError), net.run, 10*ms) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 1235, in assert_raises | |
| return _d.assertRaises(*args,**kwargs) | |
| AssertionError: (<type 'exceptions.RuntimeError'>, <class 'brian2.codegen.runtime.GSLcython_rt.GSLcython_rt.IntegrationError'>) not raised | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_complex_examples.test_cuba | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_complex_examples.py", line 39, in test_cuba | |
| assert len(Ce)>0 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Make sure that symbolic constants use the correct values in code | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 34, in test_constants_values | |
| assert_allclose(G.v[:], [np.pi, np.e, np.inf]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test that math functions give the same result, regardless of whether used | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 74, in test_math_functions | |
| assert_allclose(numpy_result, mon.func_.flatten(), | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 322, in __getattr__ | |
| return self.variables[item[:-1]].get_value().T | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_clip | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 118, in test_clip | |
| assert_equal(s_mon.clipexpr1.flatten(), [0, 1, 0, 1]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_bool_to_int | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 139, in test_bool_to_int | |
| assert_equal(s_mon.intexpr1.flatten(), [1, 0]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_timestep_function_during_run | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 167, in test_timestep_function_during_run | |
| assert all(mon.ts[0] < -1e9) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_user_defined_function | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 197, in test_user_defined_function | |
| assert_allclose(np.sin(test_array), mon.func_.flatten()) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 322, in __getattr__ | |
| return self.variables[item[:-1]].get_value().T | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the preparation of functions for use in code with check_units. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 224, in test_user_defined_function_units | |
| G.c = 'all_specified(a, b, t)' | |
| File "D:\programming\brian2\brian2\groups\neurongroup.py", line 725, in __setattr__ | |
| Group.__setattr__(self, key, value, level=1) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 425, in __setattr__ | |
| level=level+1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 892, in set_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1054, in set_with_expression_conditional | |
| codeobj_class=device.code_object_class(fallback_pref='codegen.string_expression_target')) | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function all_specified: 'No implementation available for target cpp. Available implementations: ' | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_simple_user_defined_function | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 255, in test_simple_user_defined_function | |
| net.run(default_dt) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1190, in network_run | |
| net.before_run(namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\network.py", line 843, in before_run | |
| raise brian_object_exception("An error occurred when preparing an object.", obj, ex) | |
| BrianObjectException: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 335, in code_object | |
| name=name) | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 167, in __init__ | |
| self.variables_to_namespace() | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 190, in variables_to_namespace | |
| value = var.get_value() | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Error encountered with object named "statemonitor_1". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| (See above for original error message and traceback.) | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_manual_user_defined_function | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 321, in test_manual_user_defined_function | |
| net.run(default_dt) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1190, in network_run | |
| net.before_run(namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\network.py", line 843, in before_run | |
| raise brian_object_exception("An error occurred when preparing an object.", obj, ex) | |
| BrianObjectException: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| Error encountered with object named "statemonitor_1". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| (See above for original error message and traceback.) | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_function_dependencies_numpy | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 568, in test_function_dependencies_numpy | |
| assert_allclose(G.v_[:], 84*0.001) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_binomial | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 584, in test_binomial | |
| assert np.var(mon[0].x) > 0 | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_functions.test_declare_types | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 650, in test_declare_types | |
| assert_raises(TypeError, bad_type) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 1235, in assert_raises | |
| return _d.assertRaises(*args,**kwargs) | |
| File "C:\Anaconda\lib\unittest\case.py", line 473, in assertRaises | |
| callableObj(*args, **kwargs) | |
| File "D:\programming\brian2\brian2\tests\test_functions.py", line 649, in bad_type | |
| Network(G).run(1*ms) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1190, in network_run | |
| net.before_run(namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\network.py", line 843, in before_run | |
| raise brian_object_exception("An error occurred when preparing an object.", obj, ex) | |
| BrianObjectException: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function f: 'No implementation available for target cpp. Available implementations: numpy' | |
| Error encountered with object named "neurongroup_1_stateupdater". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\unittest\case.py", line 473, in assertRaises | |
| callableObj(*args, **kwargs) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function f: 'No implementation available for target cpp. Available implementations: numpy' | |
| (See above for original error message and traceback.) | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 35, in test_spike_monitor | |
| spike_trains = mon.spike_trains() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 454, in spike_trains | |
| return self.event_trains() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 333, in event_trains | |
| return self.values('t') | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 491, in values | |
| return super(SpikeMonitor, self).values(var) | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 260, in values | |
| indices = self.i[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor_indexing | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 65, in test_spike_monitor_indexing | |
| assert_array_equal(mon.t['i == 1'], [1]*ms) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 822, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 512, in variableview_get_with_expression | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor_variables | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 85, in test_spike_monitor_variables | |
| all_values = mon1.all_values() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 527, in all_values | |
| return super(SpikeMonitor, self).all_values() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 306, in all_values | |
| indices = self.i[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor_get_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 113, in test_spike_monitor_get_states | |
| all_states = mon1.get_states() | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor_subgroups | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 132, in test_spike_monitor_subgroups | |
| assert_allclose(spikes_all.i, [0, 4, 5]) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_monitor_bug_824 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 152, in test_spike_monitor_bug_824 | |
| assert_array_equal(spikes_1.count, [4, 0, 0]) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_event_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 171, in test_event_monitor | |
| event_trains = mon.event_trains() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 333, in event_trains | |
| return self.values('t') | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 260, in values | |
| indices = self.i[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_event_monitor_no_record | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 221, in test_event_monitor_no_record | |
| assert_array_equal(event_mon.count, np.array([1, 0, 10])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_spike_trains | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 243, in test_spike_trains | |
| trains = monitor.spike_trains() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 454, in spike_trains | |
| return self.event_trains() | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 333, in event_trains | |
| return self.values('t') | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 491, in values | |
| return super(SpikeMonitor, self).values(var) | |
| File "D:\programming\brian2\brian2\monitors\spikemonitor.py", line 260, in values | |
| indices = self.i[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_synapses_state_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 255, in test_synapses_state_monitor | |
| synapse_mon = StateMonitor(S, 'w', record=S[:, 1]) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 929, in __getitem__ | |
| indices = self.indices[item] | |
| File "D:\programming\brian2\brian2\groups\group.py", line 308, in __getitem__ | |
| return self.indices(item) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 531, in __call__ | |
| pre_synapses = find_synapses(I, self.synaptic_pre.get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_state_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 306, in test_state_monitor | |
| assert_array_equal(nothing_mon.t, v_mon.t) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_state_monitor_indexing | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 370, in test_state_monitor_indexing | |
| assert_array_equal(mon.v, np.array([[5, 5], | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_state_monitor_get_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 399, in test_state_monitor_get_states | |
| all_states = mon.get_states() | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_state_monitor_resize | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 418, in test_state_monitor_resize | |
| assert len(mon.t) == 10 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1238, in __len__ | |
| return len(self.get_item(slice(None), level=1)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_1 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 433, in test_rate_monitor_1 | |
| assert_allclose(rate_mon.t, np.arange(10) * defaultclock.dt) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 446, in test_rate_monitor_2 | |
| assert_allclose(rate_mon.rate, 0.5 * np.ones(10) / defaultclock.dt) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_get_states | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 511, in test_rate_monitor_get_states | |
| all_states = rate_mon.get_states() | |
| File "D:\programming\brian2\brian2\groups\group.py", line 536, in get_states | |
| data = ImportExport.methods[format].export_data(self, vars, units=units, level=level) | |
| File "D:\programming\brian2\brian2\importexport\dictlike.py", line 23, in export_data | |
| copy=True, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_subgroups | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 530, in test_rate_monitor_subgroups | |
| assert_allclose(mean(G.rate_[:]), mean(rate_all.rate_[:])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_monitor.test_rate_monitor_subgroups_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_monitor.py", line 547, in test_rate_monitor_subgroups_2 | |
| assert_allclose(rate_all.rate, 0.5 / defaultclock.dt) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Somewhat realistic test with a loop of magic networks | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 745, in test_loop | |
| assert v[0] == 0 and 0 < v[-1] < 1 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_network.test_runtime_rounding | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_network.py", line 1347, in test_runtime_rounding | |
| assert len(mon.t) == 250 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1238, in __len__ | |
| return len(self.get_item(slice(None), level=1)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the correct handling of scalar variables | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 164, in test_scalar_variable | |
| assert_allclose(G.E_L[:], -70*mV) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the correct handling of referred scalar variables in subexpressions | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 184, in test_referred_scalar_variable | |
| assert_allclose(G2.out[:], np.arange(10)+1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test correct uses of linked variables. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 200, in test_linked_variable_correct | |
| assert_allclose(mon1.v[:, :], mon2.v[:, :]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test linked variable from a size 1 group. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 245, in test_linked_variable_scalar | |
| assert len(str(G2.x)) > 0 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1363, in __repr__ | |
| values = repr(self[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test a subexpression referring to a linked variable. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 401, in test_linked_subexpression | |
| assert all((all(mon[i].I == mon[0].I) for i in xrange(5))) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 401, in <genexpr> | |
| assert all((all(mon[i].I == mon[0].I) for i in xrange(5))) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test a linked variable referring to a subexpression without indices | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 421, in test_linked_subexpression_2 | |
| assert all(mon[0].I_l == mon1[0].I) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test a linked variable referring to a subexpression with indices | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 443, in test_linked_subexpression_3 | |
| assert all((all(mon[i].I_l == mon1[0].I) for i in xrange(5))) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 443, in <genexpr> | |
| assert all((all(mon[i].I_l == mon1[0].I) for i in xrange(5))) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_linked_var_in_reset | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 518, in test_linked_var_in_reset | |
| assert_allclose(G1.x[:], [0, 1, 0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_linked_var_in_reset_size_1 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 532, in test_linked_var_in_reset_size_1 | |
| assert_allclose(G1.x[:], 1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test that threshold and reset work in the expected way. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 660, in test_threshold_reset | |
| assert_allclose(G.v[:], np.array([0, 1, 0.5])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_custom_events_schedule | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 762, in test_custom_events_schedule | |
| assert_allclose(G.event_time[:], [1, 2]*ms) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the setting and accessing of state variables. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 816, in test_state_variables | |
| assert_allclose(G.v[0], -70*mV) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_state_variable_access_strings | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 903, in test_state_variable_access_strings | |
| assert G.v['i==2'] == G.v[2] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 822, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 512, in variableview_get_with_expression | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_state_variable_set_strings | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1007, in test_state_variable_set_strings | |
| assert_allclose(G.v1[:], [0, 3, 6, 9, 12, 10, 12, 14, 16, 18]*volt) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_sim_with_scalar_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1159, in test_sim_with_scalar_variable | |
| assert_allclose(G.v[:], np.exp(-0.1)*np.linspace(0, 1, 10, endpoint=False)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_sim_with_scalar_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1169, in test_sim_with_scalar_subexpression | |
| assert_allclose(G.v[:], np.exp(-0.1)*np.linspace(0, 1, 10, endpoint=False)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_constant_variable_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1190, in test_constant_variable_subexpression | |
| assert_allclose(G.v3[:], G.v1[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test an issue around variables aliasing other variables (#259) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1326, in test_aliasing_in_statements | |
| assert_allclose(g.x_0_[:], np.array([-1])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_random_vector_values | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1439, in test_random_vector_values | |
| assert np.var(G.v[:]) > 0 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_random_values_random_seed | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1456, in test_random_values_random_seed | |
| assert np.var(G.v1[:]) > 0 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_random_values_fixed_seed | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1471, in test_random_values_fixed_seed | |
| assert np.var(G.v1[:]) > 0 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_random_values_fixed_and_random | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1483, in test_random_values_fixed_and_random | |
| first_run_values = np.array(mon.v) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_run_regularly_scheduling | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1523, in test_run_regularly_scheduling | |
| assert_allclose(G.v1[:], 2) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_run_regularly_dt | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1535, in test_run_regularly_dt | |
| assert_allclose(G.v[:], 5) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_semantics_floor_division | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1564, in test_semantics_floor_division | |
| assert_equal(G.a[:], int_values // 3) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_semantics_floating_point_division | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1596, in test_semantics_floating_point_division | |
| assert_allclose(G.x1[:], int_values / 3) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_neurongroup.test_semantics_mod | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_neurongroup.py", line 1627, in test_semantics_mod | |
| assert_equal(G.a[:], int_values % 3) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_numpy_codegen.test_error_message | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_numpy_codegen.py", line 16, in test_error_message | |
| run(defaultclock.dt) | |
| File "D:\programming\brian2\brian2\units\fundamentalunits.py", line 2375, in new_f | |
| result = f(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\magic.py", line 371, in run | |
| namespace=namespace, profile=profile, level=2+level) | |
| File "D:\programming\brian2\brian2\core\magic.py", line 231, in run | |
| namespace=namespace, profile=profile, level=level+1) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 1190, in network_run | |
| net.before_run(namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\network.py", line 843, in before_run | |
| raise brian_object_exception("An error occurred when preparing an object.", obj, ex) | |
| BrianObjectException: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 302, in code_object | |
| '%s: %s') % (varname, ex)) | |
| NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| Error encountered with object named "neurongroup_2_run_regularly". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot use function foo: 'No implementation available for target cpp. Available implementations: ' | |
| (See above for original error message and traceback.) | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_single_rates | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 26, in test_single_rates | |
| assert_equal(spikes_P0.count, np.zeros(len(P0))) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_rate_arrays | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 36, in test_rate_arrays | |
| assert_equal(spikes.count, np.array([0, 2])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_time_dependent_rate | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 67, in test_time_dependent_rate | |
| np.array([int(round(1*ms/defaultclock.dt)), 0])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_propagation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 84, in test_propagation | |
| assert_equal(G.v[:], np.array([0., 2.])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissongroup.test_poissongroup_subgroup | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissongroup.py", line 102, in test_poissongroup_subgroup | |
| assert_equal(G.v[:], np.array([0., 0., 2., 2.])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissoninput.test_poissoninput | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissoninput.py", line 40, in test_poissoninput | |
| assert_equal(0, mon.x[:]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_poissoninput.test_poissoninput_refractory | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_poissoninput.py", line 86, in test_poissoninput_refractory | |
| assert_allclose(mon[5].v[:], expected) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_basic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 52, in test_refractoriness_basic | |
| assert_allclose(mon[0].v[:timestep(10*ms, defaultclock.dt)], | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_variables | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 96, in test_refractoriness_variables | |
| assert_allclose(mon[0].v[:timestep(10*ms, defaultclock.dt)], | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_threshold_basic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 123, in test_refractoriness_threshold_basic | |
| assert_allclose(spike_mon.t, [5, 15] * ms) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_repeated | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 133, in test_refractoriness_repeated | |
| assert spike_mon.t[0] == 0*ms | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_repeated_legacy | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 146, in test_refractoriness_repeated_legacy | |
| assert spike_mon.t[0] == 0*ms | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_refractoriness_threshold | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 179, in test_refractoriness_threshold | |
| assert_allclose(spike_mon.t, [5, 15] * ms) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_conditional_write_behaviour | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 232, in test_conditional_write_behaviour | |
| assert G.x[0] < 0.2 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_refractory.test_conditional_write_automatic_and_manual | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_refractory.py", line 253, in test_conditional_write_automatic_and_manual | |
| assert_allclose(mon.v[:, 0], 0) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test simulation of an infinite cable vs. theory for current pulse (Green function) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 189, in test_infinitecable | |
| v = mon[N//2-20].v | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test simulation of short cylinder vs. theory for constant current. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 237, in test_finitecable | |
| la = neuron.space_constant[0] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Rallpack 1 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 285, in test_rallpack1 | |
| squared_diff_0 = (data_0[:, 1] * volt - mon[0].v)**2 | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Rallpack 2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 362, in test_rallpack2 | |
| assert_allclose(mon.t/second, data_0[:, 0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1265, in __div__ | |
| return self.get_item(slice(None), level=1) / np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Rallpack 3 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 447, in test_rallpack3 | |
| assert_allclose(mon.t/second, data_0[:, 0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1265, in __div__ | |
| return self.get_item(slice(None), level=1) / np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test simulation of a cylinder plus two branches, with diameters according to Rall's formula | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 520, in test_rall | |
| assert_allclose(la, neuron.space_constant[0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spatialneuron.test_basic_diffusion | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spatialneuron.py", line 568, in test_basic_diffusion | |
| assert all(abs(mon.v[:, -1]/mV + 10) < 0.25), mon.v[:, -1]/mV | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test that `SpikeGeneratorGroup` connects properly. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 33, in test_spikegenerator_connected | |
| assert all(mon[idx].v == 0) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Basic test for `SpikeGeneratorGroup`. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 55, in test_spikegenerator_basic | |
| _compare_spikes(5, indices, times, s_mon) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 128, in _compare_spikes | |
| recorded_spikes = sorted([(idx, time) for time in recorded.t[recorded.i==idx] if time >= start_time and time < end_time]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Basic test for `SpikeGeneratorGroup` with already sorted spike events. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 69, in test_spikegenerator_basic_sorted | |
| _compare_spikes(5, indices, times, s_mon) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 128, in _compare_spikes | |
| recorded_spikes = sorted([(idx, time) for time in recorded.t[recorded.i==idx] if time >= start_time and time < end_time]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Basic test for `SpikeGeneratorGroup` with already sorted spike events. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 83, in test_spikegenerator_basic_sorted_with_sorted | |
| _compare_spikes(5, indices, times, s_mon) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 128, in _compare_spikes | |
| recorded_spikes = sorted([(idx, time) for time in recorded.t[recorded.i==idx] if time >= start_time and time < end_time]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Basic test for `SpikeGeneratorGroup`. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 100, in test_spikegenerator_period | |
| recorded_spikes = sorted([(idx, time) for time in s_mon.t[s_mon.i==idx]]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Basic test for `SpikeGeneratorGroup`. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 122, in test_spikegenerator_period_repeat | |
| assert (idx+1)*len(SG.spike_time) == s_mon.num_spikes | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1238, in __len__ | |
| return len(self.get_item(slice(None), level=1)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1115, in get_with_index_array | |
| indices = self.indexing(item, self.index_var) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 265, in __call__ | |
| return index_var.get_value()[index_array] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spikegenerator.test_spikegenerator_rounding | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 226, in test_spikegenerator_rounding | |
| assert_equal(mon.count, np.ones(100)) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spikegenerator.test_spikegenerator_rounding_long | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 259, in test_spikegenerator_rounding_long | |
| assert spikes.count[0] == N, 'expected %d spikes, got %d' % (N, spikes.count[0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_spikegenerator.test_spikegenerator_rounding_period | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_spikegenerator.py", line 279, in test_spikegenerator_rounding_period | |
| assert_equal(spikes.count[0], N*repeats) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_stateupdaters.test_multiple_noise_variables_extended | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 102, in test_multiple_noise_variables_extended | |
| no_noise_x, no_noise_y = mon.x[:], mon.y[:] | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_stateupdaters.test_multiple_noise_variables_deterministic_noise | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 169, in test_multiple_noise_variables_deterministic_noise | |
| no_noise_x, no_noise_y = mon.x[:], mon.y[:] | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_stateupdaters.test_pure_noise_deterministic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 195, in test_pure_noise_deterministic | |
| err_msg='method %s did not give the expected result' % method) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Make sure that the integration of a (non-stochastic) differential equation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 566, in test_subexpressions_basic | |
| assert_equal(mon1.v, mon2.v, 'Results for method %s differed!' % method) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Make sure that the integration of a (non-stochastic) differential equation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 590, in test_subexpressions | |
| assert_equal(mon1.v, mon2.v, 'Results for method %s differed!' % method) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_stateupdaters.test_refractory | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 673, in test_refractory | |
| assert_allclose(G_no_ref.v[:], G_ref.v[:], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_stateupdaters.test_refractory_stochastic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_stateupdaters.py", line 692, in test_refractory_stochastic | |
| assert_allclose(G_no_ref.v[:], G_ref.v[:], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the setting and accessing of state variables in subgroups. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 33, in test_state_variables | |
| np.array([0, 0, 0, 0, -80, -80, -80, -80, -80, 0])*mV) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_state_variables_simple | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 79, in test_state_variables_simple | |
| assert_equal(G.a[:], [0, 0, 0, 2, 1, 1, 1, 0, 0, 0]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test accessing subgroups with string indices. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 91, in test_state_variables_string_indices | |
| assert len(SG.v['i>3']) == 1 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 822, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 512, in variableview_get_with_expression | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_state_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 138, in test_state_monitor | |
| assert_allclose(mon_0[0].v, mon_all[0].v) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 167, in test_synapse_creation | |
| assert_equal(S._synaptic_pre[:], np.array([2, 2])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation_state_vars | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 202, in test_synapse_creation_state_vars | |
| assert len(S2) == 2 * len(SG2), str(len(S2)) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation_generator | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 241, in test_synapse_creation_generator | |
| assert_equal(S._synaptic_pre[:], np.arange(5).repeat(2)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation_generator_multiple_synapses | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 305, in test_synapse_creation_generator_multiple_synapses | |
| assert_equal(S1.j[source, :], np.arange(len(SG2)).repeat(source)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation_generator_complex_ranges | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 345, in test_synapse_creation_generator_complex_ranges | |
| assert_equal(S._synaptic_post[syn_source, :], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1115, in get_with_index_array | |
| indices = self.indexing(item, self.index_var) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 531, in __call__ | |
| pre_synapses = find_synapses(I, self.synaptic_pre.get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_creation_generator_random | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 375, in test_synapse_creation_generator_random | |
| assert len(S2) == 2 * len(SG2), str(len(S2)) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapse_access | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 391, in test_synapse_access | |
| assert all(S.w['j==0'] == 5) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 822, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 512, in variableview_get_with_expression | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synapses_access_subgroups | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 422, in test_synapses_access_subgroups | |
| S.w[SG1, SG2] = 1 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 928, in __setitem__ | |
| self.set_item(item, value, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 925, in set_item | |
| check_units=check_units) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 429, in variableview_set_with_index_array | |
| 'expressions.') % variableview.name) | |
| NotImplementedError: Cannot set variable "w" this way in standalone, try using string expressions. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_subgroup_summed_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 489, in test_subgroup_summed_variable | |
| assert_array_equal(target.Iin, [10, 5, 10, 1, 1]) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Assure that subexpressions in targeted groups are handled correctly. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 506, in test_subexpression_references | |
| assert_equal(S1.i[:], np.arange(5)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Assure that subexpressions are handled correctly, even | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 539, in test_subexpression_no_references | |
| assert_equal(G[5:].v2, np.arange(5, 10)*2) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synaptic_propagation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 583, in test_synaptic_propagation | |
| assert_equal(np.asarray(G2.v).flatten(), expected) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_synaptic_propagation_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 596, in test_synaptic_propagation_2 | |
| assert target.v[0] == 1.0 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_run_regularly | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 619, in test_run_regularly | |
| assert_array_equal(group.v, [24, 24, 20, 20, 18, 18, 17, 17, 16, 16]) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_subgroup.test_spike_monitor | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 635, in test_spike_monitor | |
| assert_equal(s_mon.i, np.array([0, 2, 5])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Using subgroups without keeping an explicit reference. Monitors | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 683, in test_no_reference_2 | |
| assert_equal(state_mon[0].v[:], np.zeros(2)) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Using subgroups without keeping an explicit reference. Monitors | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 700, in test_no_reference_3 | |
| assert_equal(G.v[:], np.array([0, 1])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Using subgroups without keeping an explicit reference. Synapses | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 718, in test_no_reference_4 | |
| assert_equal(np.asarray(G2.v).flatten(), expected) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Create a subgroup of a subgroup | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_subgroup.py", line 729, in test_recursive_subgroup | |
| assert_equal(SG2.v[:], np.array([5, 6])) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test the count of outgoing/incoming synapses per neuron. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 117, in test_incoming_outgoing | |
| assert all(S.N_outgoing[0, :] == 3) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1115, in get_with_index_array | |
| indices = self.indexing(item, self.index_var) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 531, in __call__ | |
| pre_synapses = find_synapses(I, self.synaptic_pre.get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test connecting synapses with explictly given arrays | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 157, in test_connection_arrays | |
| _compare(S1, expected1) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_string_deterministic_full | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 201, in test_connection_string_deterministic_full | |
| _compare(S1, expected_full) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_string_deterministic_full_no_self | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 226, in test_connection_string_deterministic_full_no_self | |
| _compare(S1, expected_no_self) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_string_deterministic_full_one_to_one | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 258, in test_connection_string_deterministic_full_one_to_one | |
| _compare(S1, expected_one_to_one) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_string_deterministic_full_custom | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 288, in test_connection_string_deterministic_full_custom | |
| _compare(S1, expected_custom) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_string_deterministic_multiple_and | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 300, in test_connection_string_deterministic_multiple_and | |
| assert len(synapses) == 25 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_random_with_condition | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 335, in test_connection_random_with_condition | |
| assert len(S1) == 0 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_random_with_condition_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 395, in test_connection_random_with_condition_2 | |
| assert not any(S7.i == S7.j) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test random connections. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 453, in test_connection_random_with_indices | |
| _compare(S1, expected1) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_connection_random_without_condition | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 496, in test_connection_random_without_condition | |
| _compare(S1, np.zeros((len(G), len(G2)))) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Test multiple synapses per connection. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 539, in test_connection_multiple_synapses | |
| assert len(S1) == 0 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Assign values to state variables in various ways | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 567, in test_state_variable_assignment | |
| (S.i[:] * mV, S.i[:]*np.ones(100)*mV), | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_state_variable_indexing | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 616, in test_state_variable_indexing | |
| S.w[:, :, 0] = '5*i + j' | |
| File "D:\programming\brian2\brian2\core\variables.py", line 928, in __setitem__ | |
| self.set_item(item, value, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 922, in set_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 993, in set_with_expression | |
| indices = np.atleast_1d(self.indexing(item)) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 531, in __call__ | |
| pre_synapses = find_synapses(I, self.synaptic_pre.get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_indices | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 668, in test_indices | |
| assert_equal(S.indices[:], np.arange(10*10)) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 308, in __getitem__ | |
| return self.indices(item) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 512, in __call__ | |
| start, stop, step = index.indices(len(self.synaptic_pre.get_value())) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Assure that subexpressions in targeted groups are handled correctly. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 685, in test_subexpression_references | |
| assert_equal(S.u[:], np.arange(10)[::-1]*2+1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_constant_variable_subexpression_in_synapses | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 709, in test_constant_variable_subexpression_in_synapses | |
| assert_allclose(S.v3[:], S.v1[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Assure that subexpressions in targeted groups are handled correctly. | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 731, in test_nested_subexpression_references | |
| assert_allclose(G2.v[:5], 0.) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_delay_specification | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 754, in test_delay_specification | |
| assert len(S.delay[:]) == len(G) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_delays_pathways | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 797, in test_delays_pathways | |
| assert len(S.pre1.delay[:]) == len(G) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_delays_pathways_subgroups | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 846, in test_delays_pathways_subgroups | |
| assert len(S.pre1.delay[:]) == 5 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_pre_post_simple | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 892, in test_pre_post_simple | |
| assert_allclose(syn_mon.pre_value[0][syn_mon.t < 1*ms], 0) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 319, in __getattr__ | |
| return Quantity(self.variables[item].get_value().T, | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_simple | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 908, in test_transmission_simple | |
| assert_allclose(mon[0].v[mon.t<2*ms+offset], 0.) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_custom_event | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 924, in test_transmission_custom_event | |
| assert_allclose(mon[0].v[mon.t<2*ms], 0.) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 965, in test_transmission | |
| assert_allclose(source_mon.t[source_mon.i==d], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_all_to_one_heterogeneous_delays | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 987, in test_transmission_all_to_one_heterogeneous_delays | |
| assert mon[0].v[0+offset] == 3 | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_one_to_all_heterogeneous_delays | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1004, in test_transmission_one_to_all_heterogeneous_delays | |
| assert_allclose(mon[0].v, [0, 1, 1, 2, 2]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_scalar_delay | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1022, in test_transmission_scalar_delay | |
| assert_allclose(mon[0].v[mon.t<0.5*ms+offset-defaultclock.dt/2], 0) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_scalar_delay_different_clocks | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1049, in test_transmission_scalar_delay_different_clocks | |
| assert_allclose(mon[0].v[mon.t<0.5*ms], 0) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_transmission_boolean_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1065, in test_transmission_boolean_variable | |
| assert_allclose(mon[0].v[mon.t<2*ms+offset], 0.) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_changed_dt_spikes_in_queue | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1116, in test_changed_dt_spikes_in_queue | |
| assert_allclose(mon.t[:], expected) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_summed_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1157, in test_summed_variable | |
| assert_allclose(target.v, np.array([1.0, 5.0])*volt) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_summed_variable_pre_and_post | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1184, in test_summed_variable_pre_and_post | |
| assert_allclose(G1.syn_sum[:], [0, 1, 2, 12]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_summed_variable_differing_group_size | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1215, in test_summed_variable_differing_group_size | |
| assert_allclose(G1.var[0], 5 * 1 + 0 + 1 + 2 + 3 + 4) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_summed_variables_subgroups | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1274, in test_summed_variables_subgroups | |
| assert_allclose(target.v[:6], 2*np.ones(6)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_scalar_parameter_access | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1322, in test_scalar_parameter_access | |
| assert_allclose(S.s[:], 150*Hz) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_scalar_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1356, in test_scalar_subexpression | |
| assert S.sub[:] == 150 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 828, in get_item | |
| run_namespace=namespace) | |
| File "D:\programming\brian2\brian2\core\base.py", line 274, in device_override_decorated_function | |
| return getattr(curdev, name)(*args, **kwds) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 499, in variableview_get_subexpression_with_index_array | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_sim_with_scalar_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1374, in test_sim_with_scalar_variable | |
| assert_allclose(out.v[:], [6, 7]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_sim_with_scalar_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1387, in test_sim_with_scalar_subexpression | |
| assert_allclose(out.v[:], [6, 7]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_sim_with_constant_subexpression | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1400, in test_sim_with_constant_subexpression | |
| assert_allclose(out.v[:], [6, 7]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_external_variables | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1415, in test_external_variables | |
| assert target.v[0] == 2 | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_event_driven | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1464, in test_event_driven | |
| assert_allclose(S1.w[:], S2.w[:]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_vectorisation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1796, in test_vectorisation | |
| assert_allclose(source.v[:5], 12) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_vectorisation_STDP_like | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1833, in test_vectorisation_STDP_like | |
| indices = np.argsort(np.array(zip(syn.i[:], syn.j[:]), | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synaptic_equations | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1863, in test_synaptic_equations | |
| assert_allclose(S.w[:], np.arange(10) * np.exp(-1)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_with_run_regularly | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1875, in test_synapse_with_run_regularly | |
| assert_allclose(S.w[:], np.arange(10)) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_to_synapses | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1892, in test_synapses_to_synapses | |
| assert_array_equal(target.v, [5, 3, 4]) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_to_synapses_statevar_access | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1909, in test_synapses_to_synapses_statevar_access | |
| assert_equal(modulator_to_conn.i, np.arange(40)) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_to_synapses_different_sizes | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1934, in test_synapses_to_synapses_different_sizes | |
| assert_allclose(modulatory_conn.w_post, 2*np.arange(100)) | |
| File "D:\programming\brian2\brian2\tests\utils.py", line 30, in assert_allclose | |
| numpy_allclose(np.asarray(actual), np.asarray(desired), rtol=rtol, atol=atol, **kwds) | |
| File "C:\Anaconda\lib\site-packages\numpy\core\numeric.py", line 501, in asarray | |
| return array(a, dtype, copy=False, order=order) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1115, in get_with_index_array | |
| indices = self.indexing(item, self.index_var) | |
| File "D:\programming\brian2\brian2\synapses\synapses.py", line 512, in __call__ | |
| start, stop, step = index.indices(len(self.synaptic_pre.get_value())) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_ufunc_at_vectorisation | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 1987, in test_ufunc_at_vectorisation | |
| val = rand(len(G)) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_to_synapses_summed_variable | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2024, in test_synapses_to_synapses_summed_variable | |
| assert_array_equal(conn.w[:], [10, 10, 9, 7, 4]) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_generator_deterministic | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2123, in test_synapse_generator_deterministic | |
| _compare(S1, expected_full) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_generator_deterministic_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2194, in test_synapse_generator_deterministic_2 | |
| _compare(S10, expected_ring) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 27, in _compare | |
| for _i, _j in zip(synapses.i[:], synapses.j[:]): | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_generator_random | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2232, in test_synapse_generator_random | |
| assert len(S1) == 0 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_generator_random_with_condition | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2279, in test_synapse_generator_random_with_condition | |
| assert len(S1) == 0 | |
| File "D:\programming\brian2\brian2\groups\group.py", line 633, in __len__ | |
| return int(self.variables['N'].get_value()) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapse_generator_random_with_condition_2 | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2355, in test_synapse_generator_random_with_condition_2 | |
| assert not any(S9.i == S9.j) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1333, in __eq__ | |
| return self.get_item(slice(None), level=1) == np.asanyarray(other) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_refractory | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2402, in test_synapses_refractory | |
| assert_allclose(target.v[:5], 1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_synapses.test_synapses_refractory_rand | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_synapses.py", line 2419, in test_synapses_refractory_rand | |
| assert all(target.v[:5] > 0) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_thresholder.test_simple_threshold | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_thresholder.py", line 15, in test_simple_threshold | |
| assert_equal(s_mon.count, np.array([1, 0, 1, 0])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_thresholder.test_scalar_threshold | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_thresholder.py", line 24, in test_scalar_threshold | |
| assert_equal(s_mon.count, np.array([1, 1, 1, 1])) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 347, in assert_equal | |
| return assert_array_equal(actual, desired, err_msg, verbose) | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 856, in assert_array_equal | |
| verbose=verbose, header='Arrays are not equal') | |
| File "C:\Anaconda\lib\site-packages\numpy\testing\_private\utils.py", line 690, in assert_array_compare | |
| x = array(x, copy=False, subok=True) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1207, in __array__ | |
| value = self[:] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_semantics | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 41, in test_timedarray_semantics | |
| assert_allclose(mon[0].value, [0, 0, 0, 0, 1, 1, 1, 1]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_no_units | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 51, in test_timedarray_no_units | |
| assert_allclose(mon[0].value_, np.clip(np.arange(len(mon[0].t)), 0, 9) + 1) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 46, in __getattr__ | |
| return mon.variables[item[:-1]].get_value().T[self.indices].copy() | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_with_units | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 60, in test_timedarray_with_units | |
| assert_allclose(mon[0].value, np.clip(np.arange(len(mon[0].t)), 0, 9)*amp + 2*nA) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_2d | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 70, in test_timedarray_2d | |
| assert_allclose(mon[0].value_, np.array([0, 3, 6, 9, 9]) + 1) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 46, in __getattr__ | |
| return mon.variables[item[:-1]].get_value().T[self.indices].copy() | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_no_upsampling | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 97, in test_timedarray_no_upsampling | |
| assert_allclose(mon[0].value, [0, 9, 9]) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: Use a very long timedarray (with a big dt), where the upsampling can lead | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 115, in test_long_timedarray | |
| assert_allclose(mon[0].value[mon.t < 16384*second], 16383) | |
| File "D:\programming\brian2\brian2\monitors\statemonitor.py", line 43, in __getattr__ | |
| return Quantity(mon.variables[item].get_value().T[self.indices], | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ====================================================================== | |
| NOT_IMPLEMENTED: brian2.tests.test_timedarray.test_timedarray_repeated_use | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "D:\programming\brian2\brian2\tests\test_timedarray.py", line 127, in test_timedarray_repeated_use | |
| assert G.x[0] == 6 * (run_idx + 1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 838, in __getitem__ | |
| return self.get_item(item, level=1) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 830, in get_item | |
| values = self.get_with_index_array(item) | |
| File "D:\programming\brian2\brian2\core\base.py", line 276, in device_override_decorated_function | |
| return func(*args, **kwds) | |
| File "D:\programming\brian2\brian2\core\variables.py", line 1117, in get_with_index_array | |
| return variable.get_value()[indices] | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| ---------------------------------------------------------------------- | |
| Ran 239 tests in 144.678s | |
| FAILED (NOT_IMPLEMENTED=190, SKIP=13, errors=1, failures=1) | |
| Running tests for target weave: | |
| brian2.tests.test_GSL.test_GSL_default_function ... WARNING Integrating equations with GSL is still considered experimental [brian2.stateupdaters.GSL] | |
| SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_different_clocks ... ok | |
| brian2.tests.test_GSL.test_GSL_error_bounds ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless1 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_dimensionless2 ... ok | |
| brian2.tests.test_GSL.test_GSL_error_dimension_mismatch_unit ... ok | |
| brian2.tests.test_GSL.test_GSL_error_incorrect_error_format ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonODE_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_error_nonexisting_variable ... ok | |
| brian2.tests.test_GSL.test_GSL_fixed_timestep_big_dt_small_error ... FAIL | |
| brian2.tests.test_GSL.test_GSL_method_options_neurongroup ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_spatialneuron ... ok | |
| brian2.tests.test_GSL.test_GSL_method_options_synapses ... ok | |
| brian2.tests.test_GSL.test_GSL_non_autonomous ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_refractory ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_save_step_count ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_stateupdater_basic ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_user_defined_function ... SKIP: GSL support for numpy has not been implemented yet | |
| brian2.tests.test_GSL.test_GSL_x_variable ... ok | |
| brian2.tests.test_base.test_active_flag ... ok | |
| brian2.tests.test_codegen.test_clear_cache_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_codegen.test_clear_cache_weave ... ok | |
| brian2.tests.test_codegen.test_clear_cache_cython ... SKIP: Cython-only test | |
| brian2.tests.test_complex_examples.test_cuba ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Make sure that symbolic constants use the correct values in code ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test that math functions give the same result, regardless of whether used ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_clip ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_bool_to_int ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_timestep_function_during_run ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_user_defined_function ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Test the preparation of functions for use in code with check_units. ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_simple_user_defined_function ... NOT_IMPLEMENTED: Original error and traceback: | |
| Traceback (most recent call last): | |
| File "D:\programming\brian2\brian2\core\network.py", line 841, in before_run | |
| obj.before_run(run_namespace) | |
| File "D:\programming\brian2\brian2\groups\group.py", line 1115, in before_run | |
| codeobj_class=self.codeobj_class | |
| File "D:\programming\brian2\brian2\codegen\codeobject.py", line 310, in create_runner_codeobj | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 552, in code_object | |
| override_conditional_write=override_conditional_write, | |
| File "D:\programming\brian2\brian2\devices\device.py", line 335, in code_object | |
| name=name) | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 167, in __init__ | |
| self.variables_to_namespace() | |
| File "D:\programming\brian2\brian2\codegen\runtime\numpy_rt\numpy_rt.py", line 190, in variables_to_namespace | |
| value = var.get_value() | |
| File "D:\programming\brian2\brian2\core\variables.py", line 462, in get_value | |
| return self.device.get_value(self) | |
| File "D:\programming\brian2\brian2\devices\cpp_standalone\device.py", line 491, in get_value | |
| raise NotImplementedError('Cannot retrieve the values of state ' | |
| NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| Error encountered with object named "statemonitor_1". | |
| Object was created here (most recent call only, full details in debug log): | |
| File "C:\Anaconda\lib\site-packages\nose\case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| An error occurred when preparing an object. NotImplementedError: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| (See above for original error message and traceback.) | |
| brian2.tests.test_functions.test_manual_user_defined_function ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_manual_user_defined_function_weave ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_function_dependencies_weave ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_function_dependencies_cython ... SKIP: cython-only test | |
| brian2.tests.test_functions.test_function_dependencies_numpy ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_binomial ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_functions.test_declare_types ... SKIP: numpy-only test | |
| brian2.tests.test_functions.test_multiple_stateless_function_calls ... ok | |
| brian2.tests.test_monitor.test_spike_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_indexing ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables with string expressions in standalone scripts. | |
| brian2.tests.test_monitor.test_spike_monitor_variables ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_monitor_bug_824 ... SKIP: numpy-only test | |
| brian2.tests.test_monitor.test_event_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_event_monitor_no_record ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_spike_trains ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_synapses_state_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_record_single_timestep ... ok | |
| brian2.tests.test_monitor.test_state_monitor_indexing ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_state_monitor_resize ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_1 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_get_states ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_monitor.test_rate_monitor_subgroups_2 ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_morphology.test_tree_cables_from_swc ... ok | |
| Somewhat realistic test with a loop of magic networks ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_multiple_runs_report_standalone ... Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_2 ... Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_multiple_runs_report_standalone_3 ... Starting simulation at t=0 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| Starting simulation at t=0.001 s for duration 0.001 s | |
| 0.001 s (100%) simulated in 0 s | |
| ok | |
| brian2.tests.test_network.test_dt_changes_between_runs ... ok | |
| brian2.tests.test_network.test_profile ... ERROR | |
| brian2.tests.test_network.test_profile_off ... ok | |
| brian2.tests.test_network.test_runtime_rounding ... NOT_IMPLEMENTED: Cannot retrieve the values of state variables in standalone code before the simulation has been run. | |
| brian2.tests.test_network.test_multiple_runs_constant_change ... | |
| Process finished with exit code 1 |
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