Shakeel thirdknife
thirdknife
/ gist:ac131cd04936722b3f6d
Created
February 23, 2015 15:51
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| 1.fasta 3 GATCTCCGACGAGGCCCTGGACCCCCGGGCGGCGAAGCTGCGGCGCGGCGCCCCCTGGAGGCCGCGGGACCCCTG | |
| 1.fasta 4 GCCGGTCCGCGCAGGCGCAGCGGGGTCGCAGGGCGCGGCGGGTTCCAGCGCGGGGATGGCGCTGTCCGCGGAGGA | |
| 1.fasta 5 CCGGGCGCTGGTGCGCGCCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACACGACAGAGGCCCTGGAAAG | |
| 1.fasta 10 CCGTGCTGGGCCCCTGTCCCCGGGAGGGCCCCGGCGGGGTGGGTGCGGGGGGCGTGCGGGGCGGGTGCAGGCGAG | |
| 1.fasta 12 TCAGCCCCGCGCTGCAGGCGTCGCTGGACAAGTTCCTGAGCCACGTTATCTCGGCGCTGGTTTCCGAGTACCGCT | |
| 1.fasta 13 GAACTGTGGGTGGGTGGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCAGC | |
| 2.fasta 20 GAGAGGAGGGAAGAGCAAGCTGCCCGAGACGCAGGGGAAGGAGGATGAGGGCCCTGGGGATGAGCTGGGGTGAAC | |
| 2.fasta 25 GTGAGAGAAAAGGCAGAGCTGGGCCAAGGCCCTGCCTCTCCGGGATGGTCTGTGGGGGAGCTGCAGCAGGGAGTG | |
| 2.fasta 27 AGGGATGGGCATTTTGCACGGGGGCTGATGCCACCACGTCGGGTGTCTCAGAGCCCCAGTCCCCTACCCGGATCC | |
| 2.fasta 29 GGCCTATCGGCGCTTCTACGGCCCGGTCTAGGGTGTCGCTCTGCTGGCCTGGCCGGCAACCCCAGTTCTGCTCCT |
thirdknife
/ gist:c0b1904f8bbff7e31854
Created
February 23, 2015 15:23
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| CCACTGCACTCACCGCACCCGGCCAATTTTTGTGTTTTTAGTAGAGACTAAATACCATATAGTGAACACCTAAGA | |
| CGGGGGGCCTTGGATCCAGGGCGATTCAGAGGGCCCCGGTCGGAGCTGTCGGAGATTGAGCGCGCGCGGTCCCGG | |
| GATCTCCGACGAGGCCCTGGACCCCCGGGCGGCGAAGCTGCGGCGCGGCGCCCCCTGGAGGCCGCGGGACCCCTG | |
| GCCGGTCCGCGCAGGCGCAGCGGGGTCGCAGGGCGCGGCGGGTTCCAGCGCGGGGATGGCGCTGTCCGCGGAGGA | |
| CCGGGCGCTGGTGCGCGCCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACACGACAGAGGCCCTGGAAAG | |
| GTGCGGCAGGCTGGGCGCCCCCGCCCCCAGGGGCCCTCCCTCCCCAAGCCCCCCGGACGCGCCTCACCCACGTTC | |
| CTCTCGCAGGACCTTCCTGGCTTTCCCCGCCACGAAGACCTACTTCTCCCACCTGGACCTGAGCCCCGGCTCCTC | |
| ACAAGTCAGAGCCCACGGCCAGAAGGTGGCGGACGCGCTGAGCCTCGCCGTGGAGCGCCTGGACGACCTACCCCA | |
| CGCGCTGTCCGCGCTGAGCCACCTGCACGCGTGCCAGCTGCGAGTGGACCCGGCCAGCTTCCAGGTGAGCGGCTG | |
| CCGTGCTGGGCCCCTGTCCCCGGGAGGGCCCCGGCGGGGTGGGTGCGGGGGGCGTGCGGGGCGGGTGCAGGCGAG |
thirdknife
/ gist:7e36e0919865cf415823
Created
February 23, 2015 14:31
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| ./1.fasta:3:GATCTCCGACGAGGCCCTGGACCCCCGGGCGGCGAAGCTGCGGCGCGGCGCCCCCTGGAGGCCGCGGGACCCCTG | |
| ./1.fasta:4:GCCGGTCCGCGCAGGCGCAGCGGGGTCGCAGGGCGCGGCGGGTTCCAGCGCGGGGATGGCGCTGTCCGCGGAGGA | |
| ./1.fasta:5:CCGGGCGCTGGTGCGCGCCCTGTGGAAGAAGCTGGGCAGCAACGTCGGCGTCTACACGACAGAGGCCCTGGAAAG | |
| ./1.fasta:10:CCGTGCTGGGCCCCTGTCCCCGGGAGGGCCCCGGCGGGGTGGGTGCGGGGGGCGTGCGGGGCGGGTGCAGGCGAG | |
| ./1.fasta:12:TCAGCCCCGCGCTGCAGGCGTCGCTGGACAAGTTCCTGAGCCACGTTATCTCGGCGCTGGTTTCCGAGTACCGCT | |
| ./1.fasta:13:GAACTGTGGGTGGGTGGCCGCGGGATCCCCAGGCGACCTTCCCCGTGTTTGAGTAAAGCCTCTCCCAGGAGCAGC | |
| ./2.fasta:6:GAGAGGAGGGAAGAGCAAGCTGCCCGAGACGCAGGGGAAGGAGGATGAGGGCCCTGGGGATGAGCTGGGGTGAAC | |
| ./2.fasta:11:GTGAGAGAAAAGGCAGAGCTGGGCCAAGGCCCTGCCTCTCCGGGATGGTCTGTGGGGGAGCTGCAGCAGGGAGTG | |
| ./2.fasta:13:AGGGATGGGCATTTTGCACGGGGGCTGATGCCACCACGTCGGGTGTCTCAGAGCCCCAGTCCCCTACCCGGATCC | |
| ./2.fasta:15:GGCCTATCGGCGCTTCTACGGCCCGGTCTAGGGTGTCGCTCTGCTGGCCTGGCCGGCAACCCCAGTTCTGCTCCT |
thirdknife
/ gist:1fb16cbe2ef9677b957f
Created
February 20, 2015 03:57
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| {"[\"p\"]":[{"ChrLocation":"p","MemberName":"VAMP1"}],"[\"p11.23\"]":[{"ChrLocation":"p11.23","MemberName":"KCNJ8"}],"[\"p13.31\"]":[{"ChrLocation":"p13.31","MemberName":"ING4"}],"[\"q\"]":[{"ChrLocation":"q","MemberName":"SLC38A2"},{"ChrLocation":"q","MemberName":"PLEKHA9"},{"ChrLocation":"q","MemberName":"CHST11"},{"ChrLocation":"q","MemberName":"SOCS2"}],"[\"q11\"]":[{"ChrLocation":"q11","MemberName":"ITGA5"}],"[\"q12\"]":[{"ChrLocation":"q12","MemberName":"ACCN2"},{"ChrLocation":"q12","MemberName":"RND1"},{"ChrLocation":"q12","MemberName":"PRKAG1"},{"ChrLocation":"q12","MemberName":"DHH"}],"[\"q13\"]":[{"ChrLocation":"q13","MemberName":"ITGA7"},{"ChrLocation":"q13","MemberName":"CDK2"},{"ChrLocation":"q13","MemberName":"PDE1B"},{"ChrLocation":"q13","MemberName":"SLC38A4"},{"ChrLocation":"q13","MemberName":"CACNB3"},{"ChrLocation":"q13","MemberName":"KCNH3"},{"ChrLocation":"q13","MemberName":"MYO1A"},{"ChrLocation":"q13","MemberName":"ZNFN1A4"},{"ChrLocation":"q13","MemberName":"NFE2"},{"ChrLocation":"q13" |
thirdknife
/ gist:efc2d2722510c245475b
Created
February 20, 2015 03:55
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| [{"ChrLocation":"p","MemberName":"VAMP1"},{"ChrLocation":"p11.23","MemberName":"KCNJ8"},{"ChrLocation":"p13.31","MemberName":"ING4"},{"ChrLocation":"q","MemberName":"SLC38A2"},{"ChrLocation":"q","MemberName":"PLEKHA9"},{"ChrLocation":"q","MemberName":"CHST11"},{"ChrLocation":"q","MemberName":"SOCS2"},{"ChrLocation":"q11","MemberName":"ITGA5"},{"ChrLocation":"q12","MemberName":"ACCN2"},{"ChrLocation":"q12","MemberName":"RND1"},{"ChrLocation":"q12","MemberName":"PRKAG1"},{"ChrLocation":"q12","MemberName":"DHH"},{"ChrLocation":"q13","MemberName":"ITGA7"},{"ChrLocation":"q13","MemberName":"CDK2"},{"ChrLocation":"q13","MemberName":"PDE1B"},{"ChrLocation":"q13","MemberName":"SLC38A4"},{"ChrLocation":"q13","MemberName":"CACNB3"},{"ChrLocation":"q13","MemberName":"KCNH3"},{"ChrLocation":"q13","MemberName":"MYO1A"},{"ChrLocation":"q13","MemberName":"ZNFN1A4"},{"ChrLocation":"q13","MemberName":"NFE2"},{"ChrLocation":"q13","MemberName":"IGFBP6"},{"ChrLocation":"q13","MemberName":"ERBB3"},{"ChrLocation":"q13","MemberName |
thirdknife
/ gist:dea713a07aeaa127cd3f
Created
February 16, 2015 14:07
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| /** | |
| * INTERACTIVE CHROMOSOME VISUALIZATION | |
| * opt : initialization options object | |
| * + target: REQUIRED | |
| * + segment: REQUIRED | |
| * | |
| * | |
| */ | |
| var d3 = require("d3"); |
thirdknife
/ messages.php
Last active
August 29, 2015 14:14
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| <?php | |
| require_once(APPPATH.'/libraries/REST_Controller.php'); | |
| require_once(APPPATH . '/libraries/TSBAuth.php'); | |
| require_once(APPPATH . '/libraries/DeviceDetect.php'); | |
| class Messages extends REST_Controller { | |
| var $requestUser = null; | |
| public static $DEVICE ; | |
| function __construct() { | |
| parent::__construct(); |
thirdknife
/ gist:94a277cb506b7275fc4d
Created
December 16, 2014 05:08
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| #!/bin/bash | |
| # My first script | |
| # make sure you always put $f in double quotes to avoid any nasty surprises i.e. "$f" | |
| for f in ~/Desktop/dsg1_1000Genome/1000Genome_dsg1/1000Genome_dsg1/* | |
| do | |
| echo "Processing $f file..." | |
| mv $f $f".vcf" | |
| bgzip $f".vcf" | |
| cat ~/Desktop/dsg1_1000Genome/arch_dsg1.fasta | perl vcf-consensus -s $f $f".vcf.gz" > $f".fa" |
thirdknife
/ 0_reuse_code.js
Created
November 28, 2013 17:52
Here are some things you can do with Gists in GistBox.
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| // Use Gists to store code you would like to remember later on | |
| console.log(window); // log the "window" object to the console |
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| <ul id="item-list"> | |
| {{#each itinerary}} | |
| <li>{{_id}}</li> | |
| {{/each}} | |
| </ul> |