arapheno_phenotypes.py

import requests, csv
req = requests.get('https://arapheno.1001genomes.org/rest/phenotype/list.json')
for phen in req.json():
    id = phen['phenotype_id']
    filename = '/tmp/DATA/%s_%s.csv' % (id,phen['name'])
    with open(filename, 'w') as fh:
        data = requests.get('https://arapheno.1001genomes.org/rest/phenotype/%s/values.csv' % id)
        for chunk in data.iter_content(chunk_size=128):
            fh.write(chunk)