Created
August 15, 2013 23:45
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How to process arbitrarily named files with Sun Grid Engine. Prior to this I would rename the files something numeric so that Q SUb could detect it... This was also very annoying because SGE doesn't like prepending 0's... This gets around all of that and allowing you to process any pattern of files with SGE without renaming
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| cd ${fastaDir} | |
| fs=(`ls *.fa`) | |
| i=$(expr ${SGE_TASK_ID} - 1) | |
| f=${fs[$i]} | |
| process $f |
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