Last active
December 22, 2015 19:29
-
-
Save tinylamb/6520096 to your computer and use it in GitHub Desktop.
Kmeans algorithm
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #coding=utf-8 | |
| import random,math,pylab | |
| def dis(p1,p2):#compute distance between p and c | |
| f=lambda (x,y):(x-y)**2 | |
| return sum(map(f,zip(p1,p2))) | |
| def update_center(sets):#sets=[(),(),...] | |
| n=len(sets) | |
| x,y=zip(*sets) | |
| center=(sum(x)/n,sum(y)/n) | |
| return center | |
| def cluster(points,center): #points / center =[(),(),...] | |
| set_c={} | |
| for c in center: | |
| set_c[c]=[] #initial empty setC | |
| for p in points: | |
| minD=30000 | |
| cen=(0,0)#initial cen to (0,0) | |
| for c in center: | |
| d=dis(p,c) | |
| if d<minD: # p belongs to cen | |
| minD=d | |
| cen=c | |
| set_c[cen].append(p) #append p to setC | |
| return set_c | |
| def cost(center,new_center): | |
| f=lambda (x,y):x**2+y**2 | |
| score_c=sum(map(f,center)) | |
| score_new=sum(map(f,new_center)) | |
| return abs(score_c-score_new) | |
| def Initial_p(n): #initial n points | |
| x=[random.randint(0,100) for i in range(0,n)] | |
| y=[random.randint(0,100) for i in range(0,n)] | |
| return zip(x,y) | |
| def Initial_c(n): | |
| #k=int(math.sqrt(n/2))+1 | |
| k=int(n/2) | |
| x=[random.randint(0,100) for i in range(0,k)] | |
| y=[random.randint(0,100) for i in range(0,k)] | |
| return zip(x,y) | |
| def Plot(scatter,rgb): | |
| return pylab.plot(zip(*scatter)[0],zip(*scatter)[1],'.',color=rgb) | |
| if __name__=='__main__': | |
| #initial n-points and k-clusters k=sqrt(n/2)+1 n=30 | |
| n=int(raw_input("input the number of initial points: ")) | |
| points=Initial_p(n) | |
| center=Initial_c(n) | |
| initial_center=center | |
| while(1): | |
| clus=cluster(points,center) | |
| new_center=[update_center(clus[key]) for key in clus if clus[key]!=[]]#delete the too far away center | |
| if cost(new_center,clus.keys())<5:#center==clus.keys() | |
| break | |
| else: | |
| center=new_center | |
| center=clus.keys() | |
| plot1=Plot(center,'blue') | |
| plot2=Plot(points,'red') | |
| plot3=Plot(initial_center,'green') | |
| pylab.show() |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment