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tlimpanont/datamodel.graphql

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GraphQL data examples for IMAGR
Raw
datamodel.graphql
type PipelineStep {
id: ID! @unique
stepOrder: Int
definition: StepDefinition
}
enum MODULE_TYPE {
DOCKER
}
type StepDefinition {
id: ID! @unique
name: String
version: String
description: String
type: MODULE_TYPE #really required for UI?
config: Json
owner: String
inputRequired: Boolean
inputInstructionText: String
}
type PipelineRun {
id: ID! @unique
pipeline: Pipeline
study: Study
startTime: DateTime
endTime: DateTime
currentPipelineStep: Int # reference to PipelineStep.stepOrder
following: Following #depends on which user request it (userDn ? true : false)
}
type Pipeline {
id: ID! @unique
description: String
name: String
version: String
owner: String
steps: [PipelineStep]
pipelineRuns: [PipelineRun]
}
type WebPushSubscription {
id: ID! @unique
payload: Json
userDn: String
}
enum NOTIFICATION_TYPE {
COMPLETED
INPUT_REQUIRED
}
type Notification {
id: ID! @unique
following: Following
message: String
type: NOTIFICATION_TYPE
}
enum RESOURCE_TYPE {
STUDY
PIPELINE_RUN
}
type Following {
id: ID! @unique
resourceType: RESOURCE_TYPE
resourceId: String
userDn: String #ldap user_dn
}
type ViewedStudy {
id: ID! @unique
study: Study
userDn: String #ldap user_dn
}
type UserActivityType {
root: String
message: [String]
}
type UserActivity {
id: ID! @unique
type: UserActivityType
userDn: String #ldap user_dn
}
type Study {
id: ID! @unique
description: String
pacsID: Int,
status: Int
patient: Patient
dicomTags: Json
following: Following #depends on which user request it (userDn ? true : false)
pipelineRuns: [PipelineRun]
viewedStudy: ViewedStudy #depends on which user request it (userDn ? true : false)
}
enum PATIENT_SEX {
M
F
}
type Patient {
id: ID! @unique
pacsID: Int,
name: String
dateOfBirth: DateTime
sex: PATIENT_SEX
studies: [Study]
}
Raw
queries.graphql
query searchAllStudiesByPatient {
studies(where:{patient:{name_contains: "Snoei, W."}}) {
UUID
StudyUID
id
status
dicomTags
}
}
query searchAllPipelinesByStudyUID {
studies(where:{StudyUID:"1.23.280.3452315.324556734.2435326352435"}) {
UUID
pipelines {
version
owner
steps {
module {
version
name
description
}
}
}
}
}
query allStudies {
studies {
patient {
name
dateOfBirth
}
StudyUID
UUID
status
dicomTags
}
}
query allPatients {
patients {
name
dateOfBirth
sex
}
}
query allPipelines {
pipelines {
id
name
steps {
id
config
module{
name
description
}
}
}
}
query allPipelineSteps {
pipelineSteps {
version
module {
name
description
}
}
}
Raw
seed.graphql
mutation seed {
patientDeVries: createPatient(
data: {
PatientID: "0663537"
name: "de Vries, M."
sex: F
dateOfBirth: "1976-07-12"
}
) {
id
}
patientKaagman: createPatient(
data: {
PatientID: "7635672"
name: "Kaagman, S.I."
sex: M
dateOfBirth: "1994-03-22"
}
) {
id
}
patientMonai: createPatient(
data: {
PatientID: "8728565"
name: "Monai, F."
sex: M
dateOfBirth: "2008-06-09"
}
) {
id
}
patientvanDerMeulen: createPatient(
data: {
PatientID: "0826735"
name: "van der Meulen, V.E"
sex: F
dateOfBirth: "1978-02-15"
}
) {
id
}
someStudy: createStudy(
data: {
status: 0
UUID: "a998d963-1dc1-4330-b5c8-773f581a83f1"
StudyUID: "1.23.280.3452315.324556734.2435326352435"
dicomTags: "{ \"Series\": [{ \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 8, \"SeriesDescription\": \"For Series: 501 - 502\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472349253245800001.5548457636467850249\", \"Modality\": \"ECG\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Unavailable-\", \"Columns\": 8 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": \"-Unavailable-\", \"SeriesDescription\": \"-Unavailable-\", \"SeriesUID\": \"1.2.752.24.7.1715200030.1002167876.1017982845\", \"Modality\": \"PR\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Unavailable-\", \"Columns\": \"-Unavailable-\" }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 1096, \"SeriesDescription\": \"CS DISPLAY\", \"SeriesUID\": \"1.3.46.670589.50.2.885095009672858182.30674945053595174185\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Unavailable-\", \"Columns\": 1655 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 512, \"SeriesDescription\": \"FB AX BL CS 3/3, 78%\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472258692066000001.5080226402361951721\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 3.0, \"SliceThickness\": 3.0, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": 512, \"SeriesDescription\": \"L6 AX , 78%, iDose (6)\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472348765217900001.5669825355795180723\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 0.45, \"SliceThickness\": 0.9, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": \"-Ambiguous-\", \"SeriesDescription\": \"Tracker Graph\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472333165325600001.4877511275926803969\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Unavailable-\", \"Columns\": \"-Ambiguous-\" }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": 512, \"SeriesDescription\": \"tracker\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472302488571000001.4695701438295156941\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 0.0, \"SliceThickness\": 10.0, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": 512, \"SeriesDescription\": \"COR\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472465701906200001.5265255198400443699\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": 3.0, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 512, \"SeriesDescription\": \"locator\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472286756671200001.5206769057472987654\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 0.0, \"SliceThickness\": 10.0, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": 512, \"SeriesDescription\": \"L6 AX +EC, 78%, iDose (6)\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472348765217900002.5034671938743842364\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 0.45, \"SliceThickness\": 0.9, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 512, \"SeriesDescription\": \"TS_AX BL CS 0.9, 78%\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472258692066000002.5486234696360832609\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": 0.45, \"SliceThickness\": 0.9, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 8, \"SeriesDescription\": \"For Series: 201 - 202\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472259014084400001.4948942121495298769\", \"Modality\": \"ECG\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Unavailable-\", \"Columns\": 8 }, { \"ContrastBolusAgent\": \"Iodine\", \"Rows\": 512, \"SeriesDescription\": \"SAG\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472494730566600001.5411705172507071784\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": 3.0, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": 282, \"SeriesDescription\": \"SV\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472137044108100001.5658498417753816297\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": 0.625, \"Columns\": 512 }, { \"ContrastBolusAgent\": \"-Unavailable-\", \"Rows\": \"-Ambiguous-\", \"SeriesDescription\": \"Exam Summary\", \"SeriesUID\": \"1.3.46.670589.33.1.63659472419850283700001.4923704017678269861\", \"Modality\": \"CT\", \"SpacingBetweenSlices\": \"-Unavailable-\", \"SliceThickness\": \"-Ambiguous-\", \"Columns\": \"-Ambiguous-\" }], \"StudyDescription\": \"CT HART - CORONAIREN\", \"PatientID\": \"1336331\", \"StudyUID\": \"1.3.46.670589.33.1.63659471808147296300001.5406241173742551393\", \"PatientBirthDate\": \"19950511\" }"
patient: {
create: {
PatientID: "8965344"
name: "Snoei, W."
sex: F
dateOfBirth: "1986-04-01"
}
}
pipelines: {
create: [
{
name: "CAT12 segmentation"
version: "r1258"
owner: "Hugo Kuijf"
steps: {
create: [
{
version: "0.1"
config: "{\"command\": \"dcm2nii -x n -o /mnt/working /mnt/input\" }"
module: {
create: {
name: "Dicom2NifTi"
version: "1.0"
description: "Convert a dicom image into the NifTi format"
type: DOCKER
runTimeout: 86400
owner: "Hugo Kuijf"
}
}
}
{
version: "r1258"
config: "{ \"command\": \"python /spm/run_cat.py\" }"
module: {
create: {
name: "CAT12"
version: "r1258"
description: "Construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data"
type: DOCKER
runTimeout: 86400
owner: "Hugo Kuijf"
}
}
}
]
}
}
]
}
}
) {
id
}
}
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